Wall clock time and date at job start Mon Mar 30 2020 06:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08992 * 109.99454 * 2 1 4 4 C 1.54105 * 109.87762 * 238.91706 * 2 1 3 5 5 C 1.54805 * 104.18776 * 238.54762 * 4 2 1 6 6 H 1.09002 * 110.90782 * 97.35660 * 5 4 2 7 7 N 1.46900 * 110.90883 * 220.92055 * 5 4 2 8 8 C 1.46895 * 111.00149 * 202.07445 * 7 5 4 9 9 H 1.08995 * 109.47668 * 324.99574 * 8 7 5 10 10 C 1.50707 * 109.47355 * 85.00240 * 8 7 5 11 11 H 1.07998 * 120.00052 * 64.73839 * 10 8 7 12 12 C 1.37874 * 119.99744 * 244.74934 * 10 8 7 13 13 N 1.31519 * 120.00037 * 184.69613 * 12 10 8 14 14 Si 1.86807 * 120.00079 * 4.69070 * 12 10 8 15 15 H 1.48499 * 109.46761 * 84.59124 * 14 12 10 16 16 H 1.48497 * 109.47092 * 204.58720 * 14 12 10 17 17 H 1.48496 * 109.47031 * 324.59361 * 14 12 10 18 18 C 1.50700 * 109.47053 * 204.99583 * 8 7 5 19 19 C 1.38234 * 120.00485 * 314.63178 * 18 8 7 20 20 C 1.38236 * 120.00478 * 179.78523 * 19 18 8 21 21 C 1.38237 * 119.99683 * 0.46103 * 20 19 18 22 22 C 1.38233 * 120.00057 * 359.76963 * 21 20 19 23 23 C 1.38235 * 119.99943 * 0.02562 * 22 21 20 24 24 C 1.54994 * 102.12617 * 339.13561 * 5 4 2 25 25 O 1.43747 * 109.87877 * 121.09053 * 2 1 3 26 26 H 1.08999 * 109.47009 * 181.08533 * 1 2 3 27 27 H 1.08998 * 109.46721 * 301.08028 * 1 2 3 28 28 H 1.08997 * 109.46747 * 61.07789 * 1 2 3 29 29 H 1.08994 * 110.48538 * 119.87115 * 4 2 1 30 30 H 1.09004 * 110.48683 * 357.22469 * 4 2 1 31 31 H 1.00895 * 110.99901 * 78.11349 * 7 5 4 32 32 H 0.97000 * 119.99647 * 179.97438 * 13 12 10 33 33 H 1.08007 * 119.99749 * 359.97438 * 19 18 8 34 34 H 1.07995 * 120.00467 * 180.25227 * 20 19 18 35 35 H 1.07996 * 120.00268 * 179.78996 * 21 20 19 36 36 H 1.07997 * 120.00233 * 179.97438 * 22 21 20 37 37 H 1.08008 * 120.00071 * 179.97438 * 23 22 21 38 38 H 1.08999 * 110.61920 * 155.50480 * 24 5 4 39 39 H 1.08993 * 110.61906 * 278.50397 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0540 -0.7482 -1.2412 5 6 2.9195 -1.8915 -0.6577 6 1 2.3541 -2.8222 -0.6106 7 7 4.1508 -2.0680 -1.4392 8 6 4.7039 -3.4160 -1.2526 9 1 4.5246 -3.7440 -0.2288 10 6 4.0366 -4.3698 -2.2098 11 1 4.1706 -4.2483 -3.2746 12 6 3.2549 -5.3974 -1.7262 13 7 2.7481 -6.2842 -2.5548 14 14 2.9157 -5.5303 0.1060 15 1 1.7621 -4.6649 0.4598 16 1 2.6008 -6.9401 0.4501 17 1 4.1146 -5.0915 0.8644 18 6 6.1869 -3.3919 -1.5199 19 6 6.6786 -2.7307 -2.6298 20 6 8.0392 -2.7048 -2.8726 21 6 8.9074 -3.3481 -2.0105 22 6 8.4154 -4.0134 -0.9031 23 6 7.0551 -4.0357 -0.6581 24 6 3.2380 -1.3652 0.7649 25 8 2.0188 -0.6981 1.1576 26 1 -0.3633 -1.0275 0.0195 27 1 -0.3633 0.5305 0.8801 28 1 -0.3633 0.4970 -0.8995 29 1 2.6619 -0.0859 -1.8574 30 1 1.2246 -1.1548 -1.8199 31 1 4.8322 -1.3618 -1.2047 32 1 2.1985 -7.0073 -2.2145 33 1 5.9998 -2.2317 -3.3058 34 1 8.4237 -2.1848 -3.7375 35 1 9.9701 -3.3308 -2.2019 36 1 9.0936 -4.5164 -0.2298 37 1 6.6706 -4.5558 0.2069 38 1 3.4581 -2.1923 1.4398 39 1 4.0688 -0.6603 0.7363 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000402184631.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:57 Heat of formation + Delta-G solvation = -39.704727 kcal Electronic energy + Delta-G solvation = -19931.779124 eV Core-core repulsion = 17031.121249 eV Total energy + Delta-G solvation = -2900.657876 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.80112 -39.95543 -37.01683 -34.48295 -33.22604 -32.61796 -31.62959 -29.83447 -28.18178 -26.76896 -24.46605 -23.36413 -22.53245 -21.60113 -21.50211 -19.09806 -17.93930 -17.34591 -16.97902 -16.44196 -16.38124 -15.90129 -15.80184 -15.02395 -14.89103 -14.53392 -14.25980 -14.21503 -14.02324 -13.61180 -13.41819 -13.21040 -12.91777 -12.78473 -12.69814 -12.49130 -12.06939 -11.88245 -11.75201 -11.65518 -11.54874 -11.42119 -10.78736 -10.71591 -9.66500 -9.42158 -9.03481 -8.34249 -6.35399 0.63267 0.67410 1.21601 1.24296 1.30339 2.22519 2.73185 2.95257 3.15369 3.56118 3.69230 3.80244 4.03397 4.12588 4.16093 4.24641 4.30288 4.35381 4.44032 4.45577 4.56766 4.66617 4.70803 4.80723 4.83739 4.90934 5.01115 5.07682 5.16416 5.23663 5.30682 5.33878 5.49740 5.71534 5.74920 5.85305 5.94628 6.10519 6.28542 6.44885 6.66102 6.88720 7.28193 8.82806 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.016093 B = 0.007805 C = 0.006189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.518998 B = 3586.740330 C = 4523.367770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.067 3.933 3 H 0.088 0.912 4 C -0.134 4.134 5 C 0.055 3.945 6 H 0.060 0.940 7 N -0.663 5.663 8 C 0.215 3.785 9 H 0.018 0.982 10 C -0.474 4.474 11 H 0.035 0.965 12 C 0.021 3.979 13 N -0.942 5.942 14 Si 0.918 3.082 15 H -0.266 1.266 16 H -0.287 1.287 17 H -0.245 1.245 18 C -0.073 4.073 19 C -0.116 4.116 20 C -0.124 4.124 21 C -0.136 4.136 22 C -0.122 4.122 23 C -0.146 4.146 24 C 0.022 3.978 25 O -0.395 6.395 26 H 0.045 0.955 27 H 0.068 0.932 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.071 0.929 31 H 0.331 0.669 32 H 0.265 0.735 33 H 0.115 0.885 34 H 0.141 0.859 35 H 0.148 0.852 36 H 0.142 0.858 37 H 0.107 0.893 38 H 0.075 0.925 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.608 12.062 5.595 14.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.010 3.990 3 H 0.106 0.894 4 C -0.173 4.173 5 C -0.056 4.056 6 H 0.078 0.922 7 N -0.295 5.295 8 C 0.108 3.892 9 H 0.036 0.964 10 C -0.513 4.513 11 H 0.053 0.947 12 C -0.177 4.177 13 N -0.582 5.582 14 Si 0.744 3.256 15 H -0.191 1.191 16 H -0.214 1.214 17 H -0.169 1.169 18 C -0.074 4.074 19 C -0.135 4.135 20 C -0.142 4.142 21 C -0.153 4.153 22 C -0.140 4.140 23 C -0.165 4.165 24 C -0.057 4.057 25 O -0.314 6.314 26 H 0.064 0.936 27 H 0.087 0.913 28 H 0.109 0.891 29 H 0.112 0.888 30 H 0.089 0.911 31 H 0.151 0.849 32 H 0.075 0.925 33 H 0.133 0.867 34 H 0.159 0.841 35 H 0.166 0.834 36 H 0.159 0.841 37 H 0.125 0.875 38 H 0.094 0.906 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.054 11.745 5.209 13.807 hybrid contribution -0.279 -0.829 1.150 1.445 sum 4.775 10.916 6.359 13.505 Atomic orbital electron populations 1.21949 0.92872 1.02218 1.03522 1.22971 0.95993 0.96033 0.83999 0.89416 1.22938 0.99659 0.96839 0.97830 1.23039 0.93244 0.98583 0.90719 0.92213 1.60831 1.06084 1.04484 1.58093 1.18622 0.88508 0.87554 0.94507 0.96411 1.20951 1.27512 1.09541 0.93283 0.94679 1.25787 0.95468 0.95206 1.01274 1.70021 1.35873 1.15589 1.36716 0.86245 0.79832 0.77480 0.82082 1.19120 1.21381 1.16904 1.20320 0.95389 0.96370 0.95346 1.21042 0.95895 0.99893 0.96649 1.21426 0.92755 0.99923 1.00115 1.21385 1.00705 0.98391 0.94867 1.21326 0.94406 0.99674 0.98595 1.21149 0.94480 1.00861 1.00022 1.24335 0.88279 0.96356 0.96739 1.88813 1.39932 1.68121 1.34498 0.93613 0.91262 0.89141 0.88810 0.91055 0.84932 0.92549 0.86713 0.84083 0.83380 0.84051 0.87489 0.90628 0.90164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 9.36 71.98 0.67 -2.82 16 2 C 0.07 1.82 4.06 30.97 0.13 1.95 16 3 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 4 C -0.13 -4.14 6.39 31.58 0.20 -3.94 16 5 C 0.06 2.08 3.17 46.21 0.15 2.23 16 6 H 0.06 2.71 5.42 -2.39 -0.01 2.70 16 7 N -0.66 -25.91 5.65 -470.54 -2.66 -28.57 16 8 C 0.22 9.72 2.10 43.43 0.09 9.81 16 9 H 0.02 0.84 3.99 -2.39 -0.01 0.83 16 10 C -0.47 -26.60 8.81 25.60 0.23 -26.38 16 11 H 0.03 2.24 8.06 -2.91 -0.02 2.21 16 12 C 0.02 1.20 5.47 84.65 0.46 1.66 16 13 N -0.94 -58.65 13.96 21.45 0.30 -58.35 16 14 Si 0.92 44.12 25.58 68.60 1.75 45.87 16 15 H -0.27 -12.50 6.82 99.48 0.68 -11.83 16 16 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 17 H -0.24 -10.82 6.21 99.48 0.62 -10.21 16 18 C -0.07 -2.98 4.65 -19.87 -0.09 -3.07 16 19 C -0.12 -4.28 9.07 22.27 0.20 -4.08 16 20 C -0.12 -3.69 10.05 22.27 0.22 -3.46 16 21 C -0.14 -3.65 10.05 22.27 0.22 -3.43 16 22 C -0.12 -3.62 10.05 22.27 0.22 -3.39 16 23 C -0.15 -5.39 9.67 22.27 0.22 -5.18 16 24 C 0.02 0.71 7.30 72.66 0.53 1.24 16 25 O -0.39 -13.03 11.19 -148.98 -1.67 -14.70 16 26 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.09 2.60 8.06 -2.39 -0.02 2.58 16 30 H 0.07 2.29 7.70 -2.38 -0.02 2.27 16 31 H 0.33 11.20 7.66 -89.70 -0.69 10.51 16 32 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 33 H 0.11 4.36 7.89 -2.91 -0.02 4.34 16 34 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 35 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 36 H 0.14 3.27 8.06 -2.91 -0.02 3.25 16 37 H 0.11 3.91 8.00 -2.91 -0.02 3.89 16 38 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 39 H 0.08 2.26 7.79 -2.39 -0.02 2.24 16 Total: -1.00 -66.47 314.45 1.41 -65.06 By element: Atomic # 1 Polarization: 29.30 SS G_CDS: 0.23 Total: 29.53 kcal Atomic # 6 Polarization: -42.31 SS G_CDS: 3.45 Total: -38.85 kcal Atomic # 7 Polarization: -84.56 SS G_CDS: -2.36 Total: -86.92 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: -1.67 Total: -14.70 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 1.75 Total: 45.87 kcal Total: -66.47 1.41 -65.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402184631.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.357 kcal (2) G-P(sol) polarization free energy of solvation -66.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds