Wall clock time and date at job start Mon Mar 30 2020 06:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.81861 * 2 1 4 4 C 1.54383 * 109.83264 * 239.11581 * 2 1 3 5 5 C 1.55304 * 102.25005 * 219.12754 * 4 2 1 6 6 H 1.09004 * 111.12800 * 276.21394 * 5 4 2 7 7 N 1.46901 * 111.12301 * 152.04874 * 5 4 2 8 8 C 1.46909 * 110.99755 * 154.99717 * 7 5 4 9 9 H 1.09003 * 109.46893 * 35.00445 * 8 7 5 10 10 C 1.50694 * 109.47290 * 275.00299 * 8 7 5 11 11 H 1.08002 * 119.99931 * 305.04147 * 10 8 7 12 12 C 1.37876 * 120.00238 * 125.04048 * 10 8 7 13 13 N 1.31516 * 120.00401 * 172.70714 * 12 10 8 14 14 Si 1.86799 * 119.99872 * 352.71224 * 12 10 8 15 15 H 1.48500 * 109.47257 * 85.56011 * 14 12 10 16 16 H 1.48496 * 109.47482 * 205.56202 * 14 12 10 17 17 H 1.48505 * 109.46917 * 325.56174 * 14 12 10 18 18 C 1.50701 * 109.47044 * 155.00250 * 8 7 5 19 19 C 1.38239 * 119.99906 * 45.64267 * 18 8 7 20 20 C 1.38236 * 119.99732 * 179.79307 * 19 18 8 21 21 C 1.38233 * 120.00039 * 0.43660 * 20 19 18 22 22 C 1.38241 * 120.00223 * 359.81627 * 21 20 19 23 23 C 1.38230 * 119.99526 * 359.97438 * 22 21 20 24 24 C 1.54944 * 100.94593 * 34.13224 * 5 4 2 25 25 O 1.43243 * 109.83165 * 120.97807 * 2 1 3 26 26 H 1.09004 * 109.46862 * 180.88948 * 1 2 3 27 27 H 1.08996 * 109.47438 * 300.88416 * 1 2 3 28 28 H 1.08994 * 109.47401 * 60.88876 * 1 2 3 29 29 H 1.09003 * 110.84272 * 337.31462 * 4 2 1 30 30 H 1.08993 * 110.84921 * 100.93448 * 4 2 1 31 31 H 1.00897 * 111.00171 * 31.04983 * 7 5 4 32 32 H 0.96997 * 120.00026 * 180.02562 * 13 12 10 33 33 H 1.07994 * 120.00051 * 359.97438 * 19 18 8 34 34 H 1.07999 * 120.00109 * 180.27711 * 20 19 18 35 35 H 1.07999 * 120.00258 * 179.83638 * 21 20 19 36 36 H 1.07992 * 120.00198 * 179.97438 * 22 21 20 37 37 H 1.08005 * 119.99992 * 179.97438 * 23 22 21 38 38 H 1.08999 * 110.31170 * 204.64014 * 24 5 4 39 39 H 1.09000 * 110.31194 * 82.46471 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8996 1.0254 0.0000 4 6 2.0538 -0.7455 -1.2463 5 6 3.2731 -1.5215 -0.6780 6 1 4.1621 -0.8913 -0.6513 7 7 3.5213 -2.7509 -1.4426 8 6 4.9273 -3.1630 -1.3349 9 1 5.3009 -2.9233 -0.3393 10 6 5.7456 -2.4322 -2.3679 11 1 5.4695 -2.4837 -3.4108 12 6 6.8468 -1.6978 -1.9818 13 7 7.6430 -1.1791 -2.8909 14 14 7.2078 -1.4397 -0.1673 15 1 7.9871 -2.5924 0.3513 16 1 7.9933 -0.1918 0.0086 17 1 5.9297 -1.3296 0.5809 18 6 5.0348 -4.6481 -1.5676 19 6 4.3604 -5.2328 -2.6233 20 6 4.4624 -6.5944 -2.8393 21 6 5.2314 -7.3726 -1.9944 22 6 5.9016 -6.7886 -0.9356 23 6 5.8030 -5.4265 -0.7222 24 6 2.7748 -1.8450 0.7531 25 8 2.0160 -0.6936 1.1553 26 1 -0.3633 -1.0276 0.0160 27 1 -0.3634 0.5275 0.8819 28 1 -0.3634 0.4999 -0.8978 29 1 1.3012 -1.4336 -1.6314 30 1 2.3671 -0.0408 -2.0166 31 1 3.2509 -2.6372 -2.4080 32 1 8.4179 -0.6627 -2.6192 33 1 3.7564 -4.6255 -3.2809 34 1 3.9393 -7.0506 -3.6667 35 1 5.3090 -8.4367 -2.1615 36 1 6.5020 -7.3966 -0.2752 37 1 6.3262 -4.9702 0.1053 38 1 3.6211 -1.9935 1.4238 39 1 2.1402 -2.7311 0.7415 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000402184636.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:59 Heat of formation + Delta-G solvation = -26.824472 kcal Electronic energy + Delta-G solvation = -19873.722613 eV Core-core repulsion = 16973.623267 eV Total energy + Delta-G solvation = -2900.099346 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.34011 -38.50062 -35.47488 -32.58868 -31.86631 -31.13593 -30.20731 -28.50009 -26.19531 -25.73185 -22.84849 -21.93250 -20.94157 -20.38466 -19.58180 -17.25331 -16.68539 -16.19771 -15.52673 -14.83015 -14.62271 -14.37686 -14.06331 -13.55376 -13.52832 -12.98963 -12.87718 -12.72577 -12.38597 -12.18734 -12.10147 -11.91898 -11.55388 -11.28997 -11.10643 -10.82539 -10.79602 -10.41661 -10.35942 -10.10596 -9.90040 -9.50695 -9.21594 -8.81890 -8.23081 -7.98292 -7.46544 -6.32042 -4.34357 2.10153 2.16593 3.13223 3.19975 3.23237 4.11801 4.19873 4.51503 4.81406 4.94481 5.05653 5.17492 5.29585 5.49470 5.52682 5.55296 5.62110 5.69661 5.70631 5.84965 5.98024 6.03014 6.13155 6.13647 6.22479 6.29160 6.33915 6.36831 6.40756 6.57449 6.73481 6.81187 7.13425 7.21596 7.28929 7.34421 7.49431 7.74754 7.85245 8.15880 8.37138 8.72605 9.29739 10.80154 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.015096 B = 0.007877 C = 0.006105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.405289 B = 3553.771585 C = 4585.042834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.077 3.923 3 H 0.074 0.926 4 C -0.153 4.153 5 C 0.061 3.939 6 H 0.070 0.930 7 N -0.673 5.673 8 C 0.205 3.795 9 H 0.051 0.949 10 C -0.538 4.538 11 H 0.078 0.922 12 C 0.081 3.919 13 N -0.884 5.884 14 Si 0.866 3.134 15 H -0.271 1.271 16 H -0.285 1.285 17 H -0.260 1.260 18 C -0.016 4.016 19 C -0.103 4.103 20 C -0.125 4.125 21 C -0.150 4.150 22 C -0.122 4.122 23 C -0.133 4.133 24 C 0.058 3.942 25 O -0.386 6.386 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.339 0.661 32 H 0.267 0.733 33 H 0.114 0.886 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.075 0.925 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.300 -3.114 3.864 10.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.019 3.981 3 H 0.092 0.908 4 C -0.191 4.191 5 C -0.050 4.050 6 H 0.087 0.913 7 N -0.304 5.304 8 C 0.097 3.903 9 H 0.069 0.931 10 C -0.576 4.576 11 H 0.096 0.904 12 C -0.124 4.124 13 N -0.520 5.520 14 Si 0.693 3.307 15 H -0.197 1.197 16 H -0.211 1.211 17 H -0.185 1.185 18 C -0.017 4.017 19 C -0.122 4.122 20 C -0.143 4.143 21 C -0.168 4.168 22 C -0.140 4.140 23 C -0.151 4.151 24 C -0.019 4.019 25 O -0.305 6.305 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.157 0.843 32 H 0.077 0.923 33 H 0.132 0.868 34 H 0.127 0.873 35 H 0.126 0.874 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.093 0.907 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.383 -3.336 4.547 10.947 hybrid contribution 1.056 0.775 0.009 1.310 sum -8.327 -2.561 4.556 9.831 Atomic orbital electron populations 1.22120 0.95359 1.02403 1.01727 1.22596 0.93869 0.96183 0.85455 0.90767 1.23325 0.98341 0.99657 0.97755 1.23004 0.96840 0.91839 0.93348 0.91257 1.60923 1.23286 1.29813 1.16357 1.18701 0.86015 0.88190 0.97406 0.93073 1.21491 1.11870 1.29207 0.95078 0.90402 1.25102 0.95158 0.94836 0.97283 1.69907 1.14261 1.34337 1.33466 0.87056 0.79058 0.78452 0.86137 1.19686 1.21138 1.18460 1.20245 0.92570 0.96179 0.92706 1.20805 0.99689 0.93933 0.97735 1.21017 0.99710 0.94402 0.99172 1.20845 1.00208 0.98879 0.96915 1.20928 1.00028 0.94903 0.98145 1.20936 1.00547 0.93570 1.00078 1.23411 0.94591 0.88173 0.95688 1.88370 1.70981 1.41084 1.30107 0.92213 0.92409 0.91804 0.89992 0.90220 0.84287 0.92277 0.86777 0.87251 0.87397 0.87259 0.87348 0.90663 0.91554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 9.44 37.16 0.35 -1.52 16 2 C 0.08 1.12 4.16 -26.01 -0.11 1.01 16 3 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 4 C -0.15 -2.30 5.96 -24.78 -0.15 -2.44 16 5 C 0.06 1.12 3.18 -65.46 -0.21 0.91 16 6 H 0.07 1.48 6.44 -51.93 -0.33 1.14 16 7 N -0.67 -12.91 5.75 -99.82 -0.57 -13.48 16 8 C 0.20 4.50 2.03 -70.01 -0.14 4.36 16 9 H 0.05 1.17 4.20 -51.93 -0.22 0.95 16 10 C -0.54 -13.91 8.55 -34.44 -0.29 -14.21 16 11 H 0.08 2.20 8.06 -52.49 -0.42 1.78 16 12 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 13 N -0.88 -25.68 13.96 55.43 0.77 -24.90 16 14 Si 0.87 20.43 26.44 -169.99 -4.49 15.93 16 15 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 16 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.26 -5.83 6.04 56.52 0.34 -5.49 16 18 C -0.02 -0.33 4.93 -104.62 -0.52 -0.85 16 19 C -0.10 -1.97 9.27 -39.58 -0.37 -2.34 16 20 C -0.12 -2.11 10.05 -39.58 -0.40 -2.51 16 21 C -0.15 -2.44 10.05 -39.58 -0.40 -2.84 16 22 C -0.12 -2.10 10.05 -39.58 -0.40 -2.50 16 23 C -0.13 -2.62 9.67 -39.59 -0.38 -3.00 16 24 C 0.06 1.03 7.48 38.18 0.29 1.32 16 25 O -0.39 -6.68 11.02 -35.23 -0.39 -7.07 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.08 1.14 7.85 -51.93 -0.41 0.74 16 30 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.34 6.35 7.63 -39.29 -0.30 6.05 16 32 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 33 H 0.11 2.09 7.45 -52.49 -0.39 1.70 16 34 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 35 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 36 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 37 H 0.11 2.09 8.00 -52.48 -0.42 1.67 16 38 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 316.78 15.07 4.77 4.77 Total: -1.00 -28.37 316.78 -8.65 -37.01 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -5.92 Total: 10.24 kcal Atomic # 6 Polarization: -19.69 SS G_CDS: -2.82 Total: -22.51 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: 0.20 Total: -38.38 kcal Atomic # 8 Polarization: -6.68 SS G_CDS: -0.39 Total: -7.07 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -4.49 Total: 15.93 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.37 -8.65 -37.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402184636.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.188 kcal (2) G-P(sol) polarization free energy of solvation -28.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds