Wall clock time and date at job start Mon Mar 30 2020 06:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.81861 * 2 1 4 4 C 1.54383 * 109.83264 * 239.11581 * 2 1 3 5 5 C 1.55304 * 102.25005 * 219.12754 * 4 2 1 6 6 H 1.09004 * 111.12800 * 276.21394 * 5 4 2 7 7 N 1.46901 * 111.12301 * 152.04874 * 5 4 2 8 8 C 1.46909 * 110.99755 * 154.99717 * 7 5 4 9 9 H 1.09003 * 109.46893 * 35.00445 * 8 7 5 10 10 C 1.50694 * 109.47290 * 275.00299 * 8 7 5 11 11 H 1.08002 * 119.99931 * 305.04147 * 10 8 7 12 12 C 1.37876 * 120.00238 * 125.04048 * 10 8 7 13 13 N 1.31516 * 120.00401 * 172.70714 * 12 10 8 14 14 Si 1.86799 * 119.99872 * 352.71224 * 12 10 8 15 15 H 1.48500 * 109.47257 * 85.56011 * 14 12 10 16 16 H 1.48496 * 109.47482 * 205.56202 * 14 12 10 17 17 H 1.48505 * 109.46917 * 325.56174 * 14 12 10 18 18 C 1.50701 * 109.47044 * 155.00250 * 8 7 5 19 19 C 1.38239 * 119.99906 * 45.64267 * 18 8 7 20 20 C 1.38236 * 119.99732 * 179.79307 * 19 18 8 21 21 C 1.38233 * 120.00039 * 0.43660 * 20 19 18 22 22 C 1.38241 * 120.00223 * 359.81627 * 21 20 19 23 23 C 1.38230 * 119.99526 * 359.97438 * 22 21 20 24 24 C 1.54944 * 100.94593 * 34.13224 * 5 4 2 25 25 O 1.43243 * 109.83165 * 120.97807 * 2 1 3 26 26 H 1.09004 * 109.46862 * 180.88948 * 1 2 3 27 27 H 1.08996 * 109.47438 * 300.88416 * 1 2 3 28 28 H 1.08994 * 109.47401 * 60.88876 * 1 2 3 29 29 H 1.09003 * 110.84272 * 337.31462 * 4 2 1 30 30 H 1.08993 * 110.84921 * 100.93448 * 4 2 1 31 31 H 1.00897 * 111.00171 * 31.04983 * 7 5 4 32 32 H 0.96997 * 120.00026 * 180.02562 * 13 12 10 33 33 H 1.07994 * 120.00051 * 359.97438 * 19 18 8 34 34 H 1.07999 * 120.00109 * 180.27711 * 20 19 18 35 35 H 1.07999 * 120.00258 * 179.83638 * 21 20 19 36 36 H 1.07992 * 120.00198 * 179.97438 * 22 21 20 37 37 H 1.08005 * 119.99992 * 179.97438 * 23 22 21 38 38 H 1.08999 * 110.31170 * 204.64014 * 24 5 4 39 39 H 1.09000 * 110.31194 * 82.46471 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8996 1.0254 0.0000 4 6 2.0538 -0.7455 -1.2463 5 6 3.2731 -1.5215 -0.6780 6 1 4.1621 -0.8913 -0.6513 7 7 3.5213 -2.7509 -1.4426 8 6 4.9273 -3.1630 -1.3349 9 1 5.3009 -2.9233 -0.3393 10 6 5.7456 -2.4322 -2.3679 11 1 5.4695 -2.4837 -3.4108 12 6 6.8468 -1.6978 -1.9818 13 7 7.6430 -1.1791 -2.8909 14 14 7.2078 -1.4397 -0.1673 15 1 7.9871 -2.5924 0.3513 16 1 7.9933 -0.1918 0.0086 17 1 5.9297 -1.3296 0.5809 18 6 5.0348 -4.6481 -1.5676 19 6 4.3604 -5.2328 -2.6233 20 6 4.4624 -6.5944 -2.8393 21 6 5.2314 -7.3726 -1.9944 22 6 5.9016 -6.7886 -0.9356 23 6 5.8030 -5.4265 -0.7222 24 6 2.7748 -1.8450 0.7531 25 8 2.0160 -0.6936 1.1553 26 1 -0.3633 -1.0276 0.0160 27 1 -0.3634 0.5275 0.8819 28 1 -0.3634 0.4999 -0.8978 29 1 1.3012 -1.4336 -1.6314 30 1 2.3671 -0.0408 -2.0166 31 1 3.2509 -2.6372 -2.4080 32 1 8.4179 -0.6627 -2.6192 33 1 3.7564 -4.6255 -3.2809 34 1 3.9393 -7.0506 -3.6667 35 1 5.3090 -8.4367 -2.1615 36 1 6.5020 -7.3966 -0.2752 37 1 6.3262 -4.9702 0.1053 38 1 3.6211 -1.9935 1.4238 39 1 2.1402 -2.7311 0.7415 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000402184636.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:59 Heat of formation + Delta-G solvation = -44.594969 kcal Electronic energy + Delta-G solvation = -19874.493200 eV Core-core repulsion = 16973.623267 eV Total energy + Delta-G solvation = -2900.869933 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.70722 -39.90984 -37.06065 -34.50043 -33.18233 -32.53680 -31.59932 -29.94221 -27.98777 -26.96156 -24.51569 -23.34588 -22.19055 -21.80627 -21.12333 -19.25136 -18.00964 -17.59401 -16.92031 -16.69113 -16.04589 -15.81611 -15.41185 -14.98773 -14.98059 -14.67320 -14.35649 -14.09893 -13.81785 -13.70342 -13.43009 -13.23639 -13.00070 -12.92407 -12.65238 -12.21518 -12.06431 -11.96175 -11.84661 -11.71131 -11.53400 -11.28578 -10.85961 -10.50392 -9.63391 -9.46620 -9.10020 -8.42196 -6.46059 0.68886 0.74860 1.22768 1.25843 1.31985 2.20265 2.80312 2.91800 3.18919 3.43216 3.60296 3.92855 4.08524 4.15533 4.27503 4.29119 4.35301 4.41426 4.45403 4.55990 4.61156 4.72495 4.81658 4.83662 4.90700 4.95665 4.98574 5.02058 5.17675 5.30025 5.34522 5.38185 5.42217 5.75870 5.79597 5.94487 5.96868 6.09640 6.30580 6.38332 6.59938 6.69499 7.21352 8.73698 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.015096 B = 0.007877 C = 0.006105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.405289 B = 3553.771585 C = 4585.042834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.070 3.930 3 H 0.080 0.920 4 C -0.143 4.143 5 C 0.052 3.948 6 H 0.037 0.963 7 N -0.659 5.659 8 C 0.214 3.786 9 H 0.042 0.958 10 C -0.528 4.528 11 H 0.042 0.958 12 C 0.029 3.971 13 N -0.934 5.934 14 Si 0.919 3.081 15 H -0.264 1.264 16 H -0.287 1.287 17 H -0.247 1.247 18 C -0.049 4.049 19 C -0.119 4.119 20 C -0.124 4.124 21 C -0.143 4.143 22 C -0.122 4.122 23 C -0.155 4.155 24 C 0.066 3.934 25 O -0.399 6.399 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.340 0.660 32 H 0.267 0.733 33 H 0.112 0.888 34 H 0.141 0.859 35 H 0.147 0.853 36 H 0.139 0.861 37 H 0.104 0.896 38 H 0.065 0.935 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.832 -4.816 4.637 12.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.013 3.987 3 H 0.097 0.903 4 C -0.181 4.181 5 C -0.060 4.060 6 H 0.055 0.945 7 N -0.289 5.289 8 C 0.106 3.894 9 H 0.060 0.940 10 C -0.567 4.567 11 H 0.060 0.940 12 C -0.171 4.171 13 N -0.573 5.573 14 Si 0.744 3.256 15 H -0.189 1.189 16 H -0.213 1.213 17 H -0.171 1.171 18 C -0.050 4.050 19 C -0.137 4.137 20 C -0.142 4.142 21 C -0.160 4.160 22 C -0.140 4.140 23 C -0.174 4.174 24 C -0.011 4.011 25 O -0.319 6.319 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.103 0.897 29 H 0.115 0.885 30 H 0.101 0.899 31 H 0.158 0.842 32 H 0.076 0.924 33 H 0.130 0.870 34 H 0.158 0.842 35 H 0.164 0.836 36 H 0.157 0.843 37 H 0.122 0.878 38 H 0.083 0.917 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.943 -5.046 5.330 13.177 hybrid contribution 1.463 1.213 -0.308 1.925 sum -9.480 -3.833 5.023 11.393 Atomic orbital electron populations 1.22073 0.92833 1.02812 1.03159 1.22831 0.95851 0.95938 0.84117 0.90252 1.23296 0.97041 0.99610 0.98153 1.23042 0.97058 0.91341 0.94511 0.94523 1.60894 1.21239 1.30279 1.16515 1.18500 0.86488 0.89140 0.95313 0.94031 1.21679 1.11759 1.28900 0.94356 0.94006 1.25804 0.95294 0.94959 1.01021 1.70036 1.15405 1.36391 1.35456 0.86182 0.79327 0.78302 0.81744 1.18907 1.21331 1.17147 1.20226 0.94724 0.95499 0.94535 1.20934 1.00005 0.95376 0.97429 1.21398 0.99443 0.93394 0.99978 1.21330 0.98385 1.00756 0.95575 1.21297 0.99925 0.93983 0.98808 1.21106 1.00920 0.95070 1.00278 1.23273 0.94501 0.88755 0.94608 1.88353 1.71028 1.41062 1.31445 0.92269 0.91762 0.89652 0.88477 0.89884 0.84155 0.92397 0.86956 0.84157 0.83571 0.84276 0.87765 0.91653 0.90784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 9.44 71.98 0.68 -2.49 16 2 C 0.07 1.92 4.16 31.06 0.13 2.05 16 3 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 4 C -0.14 -4.14 5.96 31.86 0.19 -3.95 16 5 C 0.05 1.90 3.18 46.37 0.15 2.04 16 6 H 0.04 1.60 6.44 -2.38 -0.02 1.58 16 7 N -0.66 -25.45 5.75 -469.72 -2.70 -28.15 16 8 C 0.21 9.60 2.03 43.42 0.09 9.69 16 9 H 0.04 1.93 4.20 -2.39 -0.01 1.92 16 10 C -0.53 -28.36 8.55 25.60 0.22 -28.15 16 11 H 0.04 2.49 8.06 -2.91 -0.02 2.47 16 12 C 0.03 1.65 5.47 84.65 0.46 2.11 16 13 N -0.93 -56.49 13.96 21.45 0.30 -56.19 16 14 Si 0.92 43.29 26.44 68.60 1.81 45.11 16 15 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 16 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 17 H -0.25 -11.00 6.04 99.48 0.60 -10.40 16 18 C -0.05 -2.04 4.93 -19.86 -0.10 -2.14 16 19 C -0.12 -4.46 9.27 22.27 0.21 -4.26 16 20 C -0.12 -3.85 10.05 22.27 0.22 -3.63 16 21 C -0.14 -4.09 10.05 22.27 0.22 -3.87 16 22 C -0.12 -3.86 10.05 22.27 0.22 -3.64 16 23 C -0.16 -6.00 9.67 22.27 0.22 -5.78 16 24 C 0.07 2.28 7.48 72.65 0.54 2.82 16 25 O -0.40 -13.34 11.02 -148.98 -1.64 -14.98 16 26 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 27 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.10 2.52 7.85 -2.39 -0.02 2.50 16 30 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.34 12.92 7.63 -89.70 -0.68 12.23 16 32 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 33 H 0.11 4.11 7.45 -2.91 -0.02 4.09 16 34 H 0.14 3.43 8.06 -2.91 -0.02 3.40 16 35 H 0.15 3.10 8.06 -2.91 -0.02 3.08 16 36 H 0.14 3.50 8.06 -2.91 -0.02 3.47 16 37 H 0.10 3.99 8.00 -2.91 -0.02 3.96 16 38 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -63.13 316.78 1.47 -61.66 By element: Atomic # 1 Polarization: 31.49 SS G_CDS: 0.24 Total: 31.74 kcal Atomic # 6 Polarization: -42.64 SS G_CDS: 3.45 Total: -39.19 kcal Atomic # 7 Polarization: -81.94 SS G_CDS: -2.40 Total: -84.34 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: -1.64 Total: -14.98 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 1.81 Total: 45.11 kcal Total: -63.13 1.47 -61.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402184636.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.069 kcal (2) G-P(sol) polarization free energy of solvation -63.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds