Wall clock time and date at job start Mon Mar 30 2020 06:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.86777 * 2 1 4 4 C 1.54096 * 109.88020 * 238.99006 * 2 1 3 5 5 C 1.54810 * 104.18775 * 238.39717 * 4 2 1 6 6 H 1.08996 * 110.91017 * 97.35186 * 5 4 2 7 7 N 1.46897 * 110.90770 * 220.92231 * 5 4 2 8 8 C 1.46903 * 111.00348 * 202.06864 * 7 5 4 9 9 H 1.09001 * 109.46432 * 35.00197 * 8 7 5 10 10 C 1.50695 * 109.47285 * 275.00449 * 8 7 5 11 11 H 1.07999 * 119.99880 * 333.50742 * 10 8 7 12 12 C 1.37878 * 120.00187 * 153.78773 * 10 8 7 13 13 N 1.31514 * 119.99681 * 354.17965 * 12 10 8 14 14 Si 1.86798 * 120.00005 * 174.18515 * 12 10 8 15 15 H 1.48498 * 109.47416 * 59.99865 * 14 12 10 16 16 H 1.48503 * 109.47269 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.47082 * 299.99668 * 14 12 10 18 18 C 1.50689 * 109.47451 * 154.99572 * 8 7 5 19 19 C 1.38240 * 120.00041 * 46.02145 * 18 8 7 20 20 C 1.38232 * 120.00272 * 179.78636 * 19 18 8 21 21 C 1.38236 * 119.99846 * 0.46500 * 20 19 18 22 22 C 1.38234 * 119.99933 * 359.76669 * 21 20 19 23 23 C 1.38230 * 120.00200 * 0.02562 * 22 21 20 24 24 C 1.55003 * 102.12437 * 339.13342 * 5 4 2 25 25 O 1.43745 * 110.00290 * 121.07745 * 2 1 3 26 26 H 1.08996 * 109.47429 * 181.00683 * 1 2 3 27 27 H 1.08997 * 109.47511 * 301.01219 * 1 2 3 28 28 H 1.09004 * 109.47116 * 61.01194 * 1 2 3 29 29 H 1.09003 * 110.48729 * 119.71856 * 4 2 1 30 30 H 1.09005 * 110.49009 * 357.07153 * 4 2 1 31 31 H 1.00903 * 111.00578 * 78.11499 * 7 5 4 32 32 H 0.97003 * 119.99446 * 179.97438 * 13 12 10 33 33 H 1.08007 * 119.99581 * 359.97438 * 19 18 8 34 34 H 1.08006 * 119.99907 * 180.25370 * 20 19 18 35 35 H 1.08002 * 119.99828 * 179.79290 * 21 20 19 36 36 H 1.08005 * 119.99663 * 179.97438 * 22 21 20 37 37 H 1.07994 * 120.00407 * 179.97438 * 23 22 21 38 38 H 1.09001 * 110.61707 * 155.50450 * 24 5 4 39 39 H 1.08997 * 110.62271 * 278.51060 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0252 0.0000 4 6 2.0540 -0.7466 -1.2420 5 6 2.9227 -1.8882 -0.6601 6 1 2.3594 -2.8201 -0.6126 7 7 4.1534 -2.0618 -1.4431 8 6 4.7098 -3.4087 -1.2577 9 1 3.8963 -4.1257 -1.1472 10 6 5.5704 -3.4308 -0.0209 11 1 6.0437 -2.5234 0.3239 12 6 5.7583 -4.6107 0.6673 13 7 5.0971 -5.6910 0.3130 14 14 6.9518 -4.6748 2.1028 15 1 6.5195 -3.7141 3.1494 16 1 6.9715 -6.0474 2.6693 17 1 8.3130 -4.3139 1.6313 18 6 5.5443 -3.7769 -2.4571 19 6 6.4510 -2.8699 -2.9732 20 6 7.2197 -3.2093 -4.0707 21 6 7.0750 -4.4522 -4.6582 22 6 6.1650 -5.3574 -4.1452 23 6 5.3993 -5.0197 -3.0450 24 6 3.2419 -1.3617 0.7624 25 8 2.0217 -0.6972 1.1569 26 1 -0.3634 -1.0274 0.0181 27 1 -0.3634 0.5294 0.8807 28 1 -0.3633 0.4980 -0.8989 29 1 2.6598 -0.0827 -1.8588 30 1 1.2248 -1.1548 -1.8199 31 1 4.8337 -1.3543 -1.2092 32 1 5.2296 -6.5212 0.7969 33 1 6.5608 -1.8971 -2.5169 34 1 7.9310 -2.5021 -4.4714 35 1 7.6733 -4.7161 -5.5178 36 1 6.0517 -6.3284 -4.6045 37 1 4.6881 -5.7267 -2.6444 38 1 3.4646 -2.1886 1.4368 39 1 4.0711 -0.6549 0.7331 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000402184642.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:01 Heat of formation + Delta-G solvation = -28.938130 kcal Electronic energy + Delta-G solvation = -19819.733491 eV Core-core repulsion = 16919.542490 eV Total energy + Delta-G solvation = -2900.191001 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.21918 -38.24913 -35.28129 -32.60679 -31.79052 -30.77624 -29.95123 -28.23608 -25.82545 -25.34019 -22.81558 -21.73308 -21.13829 -20.13308 -19.88271 -16.82431 -16.20366 -15.85600 -15.34115 -14.83445 -14.72461 -14.19915 -13.95198 -13.52136 -13.09478 -12.91310 -12.53783 -12.41515 -12.39188 -11.90874 -11.77934 -11.57969 -11.25487 -11.13020 -11.00877 -10.88292 -10.62743 -10.31522 -10.27361 -10.05916 -9.91887 -9.57609 -9.26093 -8.61929 -7.99075 -7.73474 -7.38788 -6.18183 -4.28545 2.34849 2.40235 3.22130 3.27528 3.30462 4.25902 4.29143 4.77969 5.08130 5.09853 5.13772 5.22150 5.48873 5.58752 5.65957 5.69687 5.77844 5.79919 5.87650 5.90653 6.04150 6.19907 6.26477 6.34349 6.40265 6.46437 6.54835 6.62406 6.65983 6.87948 7.02987 7.16274 7.33535 7.35988 7.46056 7.65815 7.71437 7.94412 8.02942 8.07542 8.45110 8.82038 9.38371 10.84289 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.014850 B = 0.007557 C = 0.005563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.094458 B = 3704.049900 C = 5031.856213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.070 3.930 3 H 0.058 0.942 4 C -0.145 4.145 5 C 0.077 3.923 6 H 0.087 0.913 7 N -0.675 5.675 8 C 0.232 3.768 9 H 0.069 0.931 10 C -0.543 4.543 11 H 0.058 0.942 12 C 0.077 3.923 13 N -0.877 5.877 14 Si 0.887 3.113 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.275 1.275 18 C -0.010 4.010 19 C -0.111 4.111 20 C -0.134 4.134 21 C -0.155 4.155 22 C -0.130 4.130 23 C -0.110 4.110 24 C 0.030 3.970 25 O -0.385 6.385 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.329 0.671 32 H 0.266 0.734 33 H 0.108 0.892 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.118 0.882 38 H 0.102 0.898 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.388 6.535 -4.428 8.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.011 3.989 3 H 0.076 0.924 4 C -0.184 4.184 5 C -0.035 4.035 6 H 0.105 0.895 7 N -0.304 5.304 8 C 0.124 3.876 9 H 0.087 0.913 10 C -0.582 4.582 11 H 0.076 0.924 12 C -0.129 4.129 13 N -0.513 5.513 14 Si 0.715 3.285 15 H -0.201 1.201 16 H -0.211 1.211 17 H -0.201 1.201 18 C -0.011 4.011 19 C -0.130 4.130 20 C -0.152 4.152 21 C -0.173 4.173 22 C -0.149 4.149 23 C -0.129 4.129 24 C -0.048 4.048 25 O -0.303 6.303 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.147 0.853 32 H 0.075 0.925 33 H 0.126 0.874 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.136 0.864 38 H 0.120 0.880 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.871 6.158 -4.755 8.690 hybrid contribution 1.444 -0.176 1.547 2.124 sum -2.427 5.982 -3.207 7.209 Atomic orbital electron populations 1.21909 0.94467 1.02599 1.01583 1.22670 0.94555 0.95537 0.86101 0.92378 1.23025 0.99959 0.98227 0.97160 1.22867 0.92715 0.97790 0.90088 0.89519 1.60846 1.06480 1.06637 1.56482 1.18407 0.93946 0.86122 0.89098 0.91320 1.21555 1.32136 0.95266 1.09203 0.92431 1.24929 0.95158 0.95758 0.97014 1.69874 1.39640 1.00911 1.40835 0.86727 0.82010 0.77318 0.82494 1.20101 1.21131 1.20088 1.20419 0.94909 0.92491 0.93268 1.20803 0.96602 0.99400 0.96164 1.20934 1.00094 0.96536 0.97618 1.20781 1.00643 0.94998 1.00923 1.20970 0.97629 0.98610 0.97644 1.21044 0.99945 0.96982 0.94885 1.24371 0.85991 0.96149 0.98324 1.88838 1.40550 1.67982 1.32969 0.91949 0.92522 0.91724 0.90530 0.90878 0.85340 0.92458 0.87380 0.87788 0.87891 0.87701 0.86409 0.88013 0.92887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.37 37.16 0.35 -1.46 16 2 C 0.07 1.01 4.05 -26.16 -0.11 0.91 16 3 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 4 C -0.15 -2.17 6.39 -25.20 -0.16 -2.33 16 5 C 0.08 1.40 3.41 -65.70 -0.22 1.18 16 6 H 0.09 1.74 7.50 -51.93 -0.39 1.35 16 7 N -0.68 -13.12 5.69 -100.08 -0.57 -13.69 16 8 C 0.23 5.27 2.20 -70.02 -0.15 5.12 16 9 H 0.07 1.76 6.61 -51.93 -0.34 1.42 16 10 C -0.54 -13.38 7.35 -34.44 -0.25 -13.64 16 11 H 0.06 1.41 7.70 -52.49 -0.40 1.01 16 12 C 0.08 1.98 5.45 -17.82 -0.10 1.88 16 13 N -0.88 -23.41 12.90 55.43 0.72 -22.70 16 14 Si 0.89 20.44 29.54 -169.99 -5.02 15.42 16 15 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 16 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 C -0.01 -0.21 4.93 -104.63 -0.52 -0.73 16 19 C -0.11 -2.25 9.27 -39.58 -0.37 -2.62 16 20 C -0.13 -2.44 10.05 -39.58 -0.40 -2.84 16 21 C -0.16 -2.77 10.05 -39.58 -0.40 -3.17 16 22 C -0.13 -2.48 10.05 -39.59 -0.40 -2.88 16 23 C -0.11 -2.39 9.67 -39.58 -0.38 -2.77 16 24 C 0.03 0.55 6.56 38.22 0.25 0.80 16 25 O -0.38 -6.90 11.19 -35.23 -0.39 -7.29 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.08 1.10 8.06 -51.93 -0.42 0.68 16 30 H 0.07 1.03 7.70 -51.93 -0.40 0.63 16 31 H 0.33 6.21 7.36 -39.29 -0.29 5.92 16 32 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 33 H 0.11 2.07 7.46 -52.48 -0.39 1.68 16 34 H 0.10 1.61 8.06 -52.48 -0.42 1.18 16 35 H 0.10 1.54 8.06 -52.49 -0.42 1.12 16 36 H 0.10 1.73 8.06 -52.48 -0.42 1.31 16 37 H 0.12 2.65 7.99 -52.49 -0.42 2.23 16 38 H 0.10 2.10 7.98 -51.93 -0.41 1.68 16 39 H 0.05 0.95 7.79 -51.93 -0.40 0.54 16 LS Contribution 320.64 15.07 4.83 4.83 Total: -1.00 -26.35 320.64 -9.26 -35.61 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -5.97 Total: 10.37 kcal Atomic # 6 Polarization: -19.70 SS G_CDS: -2.86 Total: -22.56 kcal Atomic # 7 Polarization: -36.53 SS G_CDS: 0.15 Total: -36.39 kcal Atomic # 8 Polarization: -6.90 SS G_CDS: -0.39 Total: -7.29 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -26.35 -9.26 -35.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402184642.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.676 kcal (2) G-P(sol) polarization free energy of solvation -26.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds