Wall clock time and date at job start Mon Mar 30 2020 06:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.86777 * 2 1 4 4 C 1.54096 * 109.88020 * 238.99006 * 2 1 3 5 5 C 1.54810 * 104.18775 * 238.39717 * 4 2 1 6 6 H 1.08996 * 110.91017 * 97.35186 * 5 4 2 7 7 N 1.46897 * 110.90770 * 220.92231 * 5 4 2 8 8 C 1.46903 * 111.00348 * 202.06864 * 7 5 4 9 9 H 1.09001 * 109.46432 * 35.00197 * 8 7 5 10 10 C 1.50695 * 109.47285 * 275.00449 * 8 7 5 11 11 H 1.07999 * 119.99880 * 333.50742 * 10 8 7 12 12 C 1.37878 * 120.00187 * 153.78773 * 10 8 7 13 13 N 1.31514 * 119.99681 * 354.17965 * 12 10 8 14 14 Si 1.86798 * 120.00005 * 174.18515 * 12 10 8 15 15 H 1.48498 * 109.47416 * 59.99865 * 14 12 10 16 16 H 1.48503 * 109.47269 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.47082 * 299.99668 * 14 12 10 18 18 C 1.50689 * 109.47451 * 154.99572 * 8 7 5 19 19 C 1.38240 * 120.00041 * 46.02145 * 18 8 7 20 20 C 1.38232 * 120.00272 * 179.78636 * 19 18 8 21 21 C 1.38236 * 119.99846 * 0.46500 * 20 19 18 22 22 C 1.38234 * 119.99933 * 359.76669 * 21 20 19 23 23 C 1.38230 * 120.00200 * 0.02562 * 22 21 20 24 24 C 1.55003 * 102.12437 * 339.13342 * 5 4 2 25 25 O 1.43745 * 110.00290 * 121.07745 * 2 1 3 26 26 H 1.08996 * 109.47429 * 181.00683 * 1 2 3 27 27 H 1.08997 * 109.47511 * 301.01219 * 1 2 3 28 28 H 1.09004 * 109.47116 * 61.01194 * 1 2 3 29 29 H 1.09003 * 110.48729 * 119.71856 * 4 2 1 30 30 H 1.09005 * 110.49009 * 357.07153 * 4 2 1 31 31 H 1.00903 * 111.00578 * 78.11499 * 7 5 4 32 32 H 0.97003 * 119.99446 * 179.97438 * 13 12 10 33 33 H 1.08007 * 119.99581 * 359.97438 * 19 18 8 34 34 H 1.08006 * 119.99907 * 180.25370 * 20 19 18 35 35 H 1.08002 * 119.99828 * 179.79290 * 21 20 19 36 36 H 1.08005 * 119.99663 * 179.97438 * 22 21 20 37 37 H 1.07994 * 120.00407 * 179.97438 * 23 22 21 38 38 H 1.09001 * 110.61707 * 155.50450 * 24 5 4 39 39 H 1.08997 * 110.62271 * 278.51060 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0252 0.0000 4 6 2.0540 -0.7466 -1.2420 5 6 2.9227 -1.8882 -0.6601 6 1 2.3594 -2.8201 -0.6126 7 7 4.1534 -2.0618 -1.4431 8 6 4.7098 -3.4087 -1.2577 9 1 3.8963 -4.1257 -1.1472 10 6 5.5704 -3.4308 -0.0209 11 1 6.0437 -2.5234 0.3239 12 6 5.7583 -4.6107 0.6673 13 7 5.0971 -5.6910 0.3130 14 14 6.9518 -4.6748 2.1028 15 1 6.5195 -3.7141 3.1494 16 1 6.9715 -6.0474 2.6693 17 1 8.3130 -4.3139 1.6313 18 6 5.5443 -3.7769 -2.4571 19 6 6.4510 -2.8699 -2.9732 20 6 7.2197 -3.2093 -4.0707 21 6 7.0750 -4.4522 -4.6582 22 6 6.1650 -5.3574 -4.1452 23 6 5.3993 -5.0197 -3.0450 24 6 3.2419 -1.3617 0.7624 25 8 2.0217 -0.6972 1.1569 26 1 -0.3634 -1.0274 0.0181 27 1 -0.3634 0.5294 0.8807 28 1 -0.3633 0.4980 -0.8989 29 1 2.6598 -0.0827 -1.8588 30 1 1.2248 -1.1548 -1.8199 31 1 4.8337 -1.3543 -1.2092 32 1 5.2296 -6.5212 0.7969 33 1 6.5608 -1.8971 -2.5169 34 1 7.9310 -2.5021 -4.4714 35 1 7.6733 -4.7161 -5.5178 36 1 6.0517 -6.3284 -4.6045 37 1 4.6881 -5.7267 -2.6444 38 1 3.4646 -2.1886 1.4368 39 1 4.0711 -0.6549 0.7331 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000402184642.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:01 Heat of formation + Delta-G solvation = -43.779495 kcal Electronic energy + Delta-G solvation = -19820.377061 eV Core-core repulsion = 16919.542490 eV Total energy + Delta-G solvation = -2900.834571 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.63758 -39.77128 -36.90031 -34.42232 -33.06033 -32.31934 -31.47469 -29.71153 -27.64497 -26.63761 -24.52558 -23.25270 -22.49435 -21.52732 -21.48194 -18.71000 -17.69018 -17.25884 -16.88853 -16.47160 -16.20251 -15.70493 -15.50437 -15.14890 -14.55966 -14.31057 -14.07039 -13.91301 -13.66472 -13.40895 -13.14257 -13.09626 -12.92314 -12.83651 -12.60177 -12.43549 -12.07059 -11.94170 -11.79050 -11.55210 -11.48190 -11.28949 -10.63655 -10.57712 -9.52257 -9.31112 -9.06143 -8.11841 -6.28672 0.80499 0.86890 1.36880 1.38585 1.43782 2.36737 2.90366 3.12109 3.28578 3.69096 3.84614 3.91295 4.16166 4.21105 4.30750 4.35454 4.38567 4.48809 4.54712 4.73349 4.76976 4.84770 4.91498 4.93850 5.04133 5.10408 5.14774 5.19560 5.22456 5.35737 5.46333 5.50406 5.64801 5.84800 5.91937 5.96975 6.02485 6.21005 6.32305 6.48053 6.79517 6.92615 7.39929 8.87042 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.014850 B = 0.007557 C = 0.005563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.094458 B = 3704.049900 C = 5031.856213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.063 3.937 3 H 0.077 0.923 4 C -0.132 4.132 5 C 0.073 3.927 6 H 0.058 0.942 7 N -0.664 5.664 8 C 0.242 3.758 9 H 0.028 0.972 10 C -0.540 4.540 11 H 0.057 0.943 12 C 0.030 3.970 13 N -0.906 5.906 14 Si 0.938 3.062 15 H -0.272 1.272 16 H -0.288 1.288 17 H -0.274 1.274 18 C -0.036 4.036 19 C -0.123 4.123 20 C -0.129 4.129 21 C -0.149 4.149 22 C -0.133 4.133 23 C -0.136 4.136 24 C 0.038 3.962 25 O -0.402 6.402 26 H 0.051 0.949 27 H 0.062 0.938 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.335 0.665 32 H 0.262 0.738 33 H 0.115 0.885 34 H 0.140 0.860 35 H 0.142 0.858 36 H 0.128 0.872 37 H 0.092 0.908 38 H 0.070 0.930 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.402 8.332 -5.962 10.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.006 3.994 3 H 0.095 0.905 4 C -0.171 4.171 5 C -0.038 4.038 6 H 0.076 0.924 7 N -0.294 5.294 8 C 0.134 3.866 9 H 0.046 0.954 10 C -0.579 4.579 11 H 0.075 0.925 12 C -0.172 4.172 13 N -0.543 5.543 14 Si 0.765 3.235 15 H -0.197 1.197 16 H -0.214 1.214 17 H -0.199 1.199 18 C -0.038 4.038 19 C -0.141 4.141 20 C -0.147 4.147 21 C -0.166 4.166 22 C -0.151 4.151 23 C -0.155 4.155 24 C -0.040 4.040 25 O -0.321 6.321 26 H 0.070 0.930 27 H 0.081 0.919 28 H 0.110 0.890 29 H 0.108 0.892 30 H 0.102 0.898 31 H 0.153 0.847 32 H 0.071 0.929 33 H 0.133 0.867 34 H 0.158 0.842 35 H 0.160 0.840 36 H 0.146 0.854 37 H 0.111 0.889 38 H 0.089 0.911 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.891 7.977 -6.288 10.561 hybrid contribution 1.106 -0.699 1.953 2.351 sum -1.785 7.278 -4.335 8.657 Atomic orbital electron populations 1.21925 0.92505 1.02485 1.03312 1.22958 0.96170 0.95809 0.84470 0.90508 1.22958 0.99663 0.96887 0.97554 1.22855 0.92495 0.97918 0.90550 0.92399 1.60853 1.06730 1.05251 1.56517 1.18094 0.92529 0.86686 0.89312 0.95386 1.21792 1.31398 0.94910 1.09787 0.92466 1.25567 0.96602 0.95801 0.99203 1.70006 1.41146 1.01198 1.41997 0.85917 0.80280 0.77063 0.80280 1.19672 1.21354 1.19922 1.20394 0.96083 0.93434 0.93858 1.20952 0.96671 0.99356 0.97141 1.21351 0.99627 0.97379 0.96358 1.21236 0.99758 0.94246 1.01410 1.21257 0.97139 1.00097 0.96583 1.21021 1.01028 0.96786 0.96687 1.24128 0.86824 0.95498 0.97550 1.88819 1.40169 1.68335 1.34774 0.92965 0.91884 0.88969 0.89238 0.89836 0.84739 0.92918 0.86657 0.84208 0.84010 0.85377 0.88946 0.91143 0.92022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 9.37 71.98 0.67 -2.54 16 2 C 0.06 1.73 4.05 30.96 0.13 1.86 16 3 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 4 C -0.13 -3.78 6.39 31.58 0.20 -3.58 16 5 C 0.07 2.73 3.41 46.22 0.16 2.89 16 6 H 0.06 2.48 7.50 -2.39 -0.02 2.46 16 7 N -0.66 -26.22 5.69 -470.55 -2.68 -28.90 16 8 C 0.24 11.48 2.20 43.42 0.10 11.57 16 9 H 0.03 1.55 6.61 -2.39 -0.02 1.53 16 10 C -0.54 -27.38 7.35 25.60 0.19 -27.20 16 11 H 0.06 2.84 7.70 -2.91 -0.02 2.82 16 12 C 0.03 1.59 5.45 84.65 0.46 2.06 16 13 N -0.91 -50.69 12.90 21.45 0.28 -50.42 16 14 Si 0.94 42.75 29.54 68.60 2.03 44.77 16 15 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 16 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 17 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 18 C -0.04 -1.65 4.93 -19.87 -0.10 -1.74 16 19 C -0.12 -4.82 9.27 22.27 0.21 -4.61 16 20 C -0.13 -4.30 10.05 22.27 0.22 -4.08 16 21 C -0.15 -4.79 10.05 22.27 0.22 -4.57 16 22 C -0.13 -4.88 10.05 22.27 0.22 -4.65 16 23 C -0.14 -6.07 9.67 22.27 0.22 -5.86 16 24 C 0.04 1.44 6.56 72.67 0.48 1.92 16 25 O -0.40 -14.32 11.19 -148.98 -1.67 -15.99 16 26 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.09 2.35 8.06 -2.39 -0.02 2.33 16 30 H 0.08 2.22 7.70 -2.38 -0.02 2.20 16 31 H 0.33 12.53 7.36 -89.69 -0.66 11.87 16 32 H 0.26 14.20 8.31 -92.71 -0.77 13.42 16 33 H 0.12 4.24 7.46 -2.91 -0.02 4.22 16 34 H 0.14 3.64 8.06 -2.91 -0.02 3.61 16 35 H 0.14 3.50 8.06 -2.91 -0.02 3.47 16 36 H 0.13 3.99 8.06 -2.91 -0.02 3.97 16 37 H 0.09 4.47 7.99 -2.91 -0.02 4.44 16 38 H 0.07 3.07 7.98 -2.39 -0.02 3.05 16 39 H 0.06 2.20 7.79 -2.39 -0.02 2.18 16 Total: -1.00 -58.65 320.64 1.70 -56.95 By element: Atomic # 1 Polarization: 31.75 SS G_CDS: 0.37 Total: 32.11 kcal Atomic # 6 Polarization: -41.91 SS G_CDS: 3.38 Total: -38.53 kcal Atomic # 7 Polarization: -76.92 SS G_CDS: -2.40 Total: -79.32 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: -1.67 Total: -15.99 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.77 kcal Total: -58.65 1.70 -56.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402184642.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.172 kcal (2) G-P(sol) polarization free energy of solvation -58.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds