Wall clock time and date at job start Mon Mar 30 2020 06:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.82390 * 2 1 4 4 C 1.54380 * 109.83099 * 239.11528 * 2 1 3 5 5 C 1.55307 * 102.25182 * 219.13331 * 4 2 1 6 6 H 1.09002 * 111.12295 * 276.16593 * 5 4 2 7 7 N 1.46898 * 111.12732 * 152.05267 * 5 4 2 8 8 C 1.46896 * 111.00410 * 154.99511 * 7 5 4 9 9 H 1.08999 * 109.47327 * 324.99761 * 8 7 5 10 10 C 1.50697 * 109.46992 * 84.99794 * 8 7 5 11 11 H 1.08000 * 120.00345 * 35.00978 * 10 8 7 12 12 C 1.37884 * 119.99931 * 215.00457 * 10 8 7 13 13 N 1.31515 * 119.99656 * 175.04730 * 12 10 8 14 14 Si 1.86793 * 120.00154 * 355.05019 * 12 10 8 15 15 H 1.48506 * 109.46996 * 275.28595 * 14 12 10 16 16 H 1.48500 * 109.46920 * 35.28647 * 14 12 10 17 17 H 1.48500 * 109.47335 * 155.28784 * 14 12 10 18 18 C 1.50696 * 109.47491 * 205.00093 * 8 7 5 19 19 C 1.38240 * 119.99720 * 314.51888 * 18 8 7 20 20 C 1.38243 * 119.99680 * 179.79020 * 19 18 8 21 21 C 1.38231 * 119.99733 * 0.46224 * 20 19 18 22 22 C 1.38234 * 120.00421 * 359.77115 * 21 20 19 23 23 C 1.38225 * 119.99910 * 0.02562 * 22 21 20 24 24 C 1.54935 * 100.94658 * 34.12909 * 5 4 2 25 25 O 1.43234 * 109.83152 * 120.98173 * 2 1 3 26 26 H 1.08999 * 109.46943 * 180.88720 * 1 2 3 27 27 H 1.08996 * 109.46910 * 300.88833 * 1 2 3 28 28 H 1.09006 * 109.46888 * 60.88172 * 1 2 3 29 29 H 1.08995 * 110.85243 * 100.93966 * 4 2 1 30 30 H 1.09004 * 110.85024 * 337.31955 * 4 2 1 31 31 H 1.00904 * 111.00485 * 31.04124 * 7 5 4 32 32 H 0.96998 * 120.00171 * 180.02562 * 13 12 10 33 33 H 1.07997 * 119.99985 * 359.97438 * 19 18 8 34 34 H 1.07995 * 119.99851 * 180.25558 * 20 19 18 35 35 H 1.08006 * 119.99441 * 179.79464 * 21 20 19 36 36 H 1.08004 * 119.99858 * 180.02562 * 22 21 20 37 37 H 1.08006 * 120.00331 * 179.97438 * 23 22 21 38 38 H 1.08999 * 110.30809 * 82.46944 * 24 5 4 39 39 H 1.08999 * 110.31351 * 204.64277 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8997 1.0254 0.0000 4 6 2.0537 -0.7455 -1.2463 5 6 3.2730 -1.5216 -0.6780 6 1 4.1622 -0.8918 -0.6521 7 7 3.5212 -2.7511 -1.4427 8 6 4.9270 -3.1633 -1.3350 9 1 5.5627 -2.2789 -1.2911 10 6 5.1163 -3.9806 -0.0831 11 1 4.3306 -4.6396 0.2555 12 6 6.2928 -3.8872 0.6299 13 7 6.4212 -4.5246 1.7730 14 14 7.7042 -2.8553 -0.0278 15 1 8.5056 -3.6635 -0.9818 16 1 7.1616 -1.6614 -0.7245 17 1 8.5673 -2.4209 1.0998 18 6 5.3013 -3.9915 -2.5370 19 6 4.4553 -4.9923 -2.9773 20 6 4.7966 -5.7492 -4.0826 21 6 5.9881 -5.5115 -4.7418 22 6 6.8363 -4.5139 -4.2987 23 6 6.4931 -3.7543 -3.1960 24 6 2.7748 -1.8451 0.7530 25 8 2.0159 -0.6936 1.1552 26 1 -0.3633 -1.0275 0.0159 27 1 -0.3633 0.5276 0.8819 28 1 -0.3633 0.5001 -0.8978 29 1 2.3672 -0.0409 -2.0166 30 1 1.3012 -1.4336 -1.6316 31 1 3.2508 -2.6373 -2.4081 32 1 7.2487 -4.4587 2.2749 33 1 3.5265 -5.1809 -2.4595 34 1 4.1338 -6.5283 -4.4290 35 1 6.2562 -6.1051 -5.6034 36 1 7.7670 -4.3281 -4.8141 37 1 7.1559 -2.9752 -2.8495 38 1 2.1401 -2.7311 0.7414 39 1 3.6210 -1.9936 1.4237 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000402184649.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:03 Heat of formation + Delta-G solvation = -19.986860 kcal Electronic energy + Delta-G solvation = -19885.326249 eV Core-core repulsion = 16985.523404 eV Total energy + Delta-G solvation = -2899.802845 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.28834 -38.57946 -35.41695 -32.60524 -31.76797 -31.13127 -30.28205 -28.42332 -26.40314 -25.58416 -22.64083 -22.01376 -20.89147 -20.37302 -19.70240 -17.09855 -16.60452 -16.14325 -15.48134 -14.82886 -14.54897 -14.37892 -14.07143 -13.70215 -13.31664 -13.08748 -12.86680 -12.79584 -12.39243 -12.30229 -12.14478 -11.86022 -11.46532 -10.99909 -10.97559 -10.83023 -10.72084 -10.52082 -10.19481 -10.17881 -9.82419 -9.58340 -9.02397 -8.70252 -8.29793 -7.96749 -7.53373 -6.18462 -4.15749 2.00647 2.06003 3.18167 3.23401 3.28415 4.22722 4.29256 4.44254 4.80757 4.88678 5.09858 5.20904 5.27275 5.46023 5.48987 5.51894 5.63601 5.64637 5.70722 5.87611 5.89367 6.02912 6.05559 6.17603 6.20401 6.21934 6.39453 6.51609 6.58308 6.64345 6.74186 6.82801 7.05665 7.09912 7.33729 7.43294 7.53035 7.68403 7.83104 8.14562 8.56901 8.94937 9.43331 10.93478 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.016812 B = 0.007522 C = 0.005872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.082016 B = 3721.570635 C = 4766.865293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.079 3.921 3 H 0.071 0.929 4 C -0.158 4.158 5 C 0.069 3.931 6 H 0.054 0.946 7 N -0.662 5.662 8 C 0.208 3.792 9 H 0.024 0.976 10 C -0.483 4.483 11 H 0.085 0.915 12 C 0.076 3.924 13 N -0.887 5.887 14 Si 0.861 3.139 15 H -0.269 1.269 16 H -0.265 1.265 17 H -0.288 1.288 18 C -0.049 4.049 19 C -0.099 4.099 20 C -0.126 4.126 21 C -0.147 4.147 22 C -0.123 4.123 23 C -0.136 4.136 24 C 0.070 3.930 25 O -0.389 6.389 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.322 0.678 32 H 0.266 0.734 33 H 0.126 0.874 34 H 0.112 0.888 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.106 0.894 38 H 0.068 0.932 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.745 5.621 -9.614 12.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.020 3.980 3 H 0.089 0.911 4 C -0.196 4.196 5 C -0.042 4.042 6 H 0.072 0.928 7 N -0.293 5.293 8 C 0.100 3.900 9 H 0.042 0.958 10 C -0.521 4.521 11 H 0.103 0.897 12 C -0.128 4.128 13 N -0.524 5.524 14 Si 0.689 3.311 15 H -0.194 1.194 16 H -0.191 1.191 17 H -0.214 1.214 18 C -0.050 4.050 19 C -0.118 4.118 20 C -0.144 4.144 21 C -0.165 4.165 22 C -0.141 4.141 23 C -0.155 4.155 24 C -0.006 4.006 25 O -0.309 6.309 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.102 0.898 31 H 0.140 0.860 32 H 0.076 0.924 33 H 0.144 0.856 34 H 0.130 0.870 35 H 0.127 0.873 36 H 0.127 0.873 37 H 0.124 0.876 38 H 0.086 0.914 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.865 5.228 -8.709 11.729 hybrid contribution 1.584 0.943 -1.047 2.120 sum -4.281 6.171 -9.756 12.312 Atomic orbital electron populations 1.22127 0.95504 1.02498 1.01562 1.22515 0.93882 0.95967 0.85610 0.91133 1.23400 0.98847 0.99535 0.97832 1.23031 0.95761 0.90378 0.95023 0.92844 1.60639 1.23756 1.30674 1.14232 1.18959 0.84948 0.93766 0.92328 0.95809 1.20829 1.02161 1.24689 1.04428 0.89656 1.24994 0.98086 0.95313 0.94412 1.69872 1.26692 1.42660 1.13200 0.87181 0.83491 0.81447 0.79015 1.19427 1.19103 1.21390 1.20714 0.93653 0.97082 0.93564 1.20983 1.00299 0.94903 0.95566 1.21087 0.96874 0.99659 0.96780 1.20882 0.95597 0.99248 1.00773 1.20935 0.99089 0.96767 0.97332 1.20993 0.97450 1.00735 0.96336 1.23412 0.95073 0.87130 0.95030 1.88407 1.71213 1.41623 1.29618 0.92106 0.92337 0.92100 0.90968 0.89807 0.86007 0.92414 0.85602 0.87033 0.87274 0.87253 0.87636 0.91378 0.88672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 9.44 37.16 0.35 -1.56 16 2 C 0.08 1.13 4.16 -26.01 -0.11 1.02 16 3 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 4 C -0.16 -2.22 5.96 -24.79 -0.15 -2.37 16 5 C 0.07 1.24 3.38 -65.47 -0.22 1.02 16 6 H 0.05 1.03 7.45 -51.93 -0.39 0.65 16 7 N -0.66 -12.57 5.76 -99.84 -0.57 -13.15 16 8 C 0.21 4.58 1.87 -70.02 -0.13 4.45 16 9 H 0.02 0.56 4.24 -51.93 -0.22 0.34 16 10 C -0.48 -12.70 8.49 -34.44 -0.29 -13.00 16 11 H 0.09 2.50 8.06 -52.49 -0.42 2.08 16 12 C 0.08 2.08 5.47 -17.82 -0.10 1.99 16 13 N -0.89 -26.12 13.96 55.43 0.77 -25.35 16 14 Si 0.86 20.77 25.07 -169.99 -4.26 16.51 16 15 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 16 H -0.27 -6.08 6.06 56.52 0.34 -5.74 16 17 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 18 C -0.05 -1.01 4.58 -104.62 -0.48 -1.49 16 19 C -0.10 -1.88 9.08 -39.58 -0.36 -2.23 16 20 C -0.13 -2.08 10.05 -39.58 -0.40 -2.48 16 21 C -0.15 -2.35 10.05 -39.59 -0.40 -2.74 16 22 C -0.12 -2.12 10.05 -39.59 -0.40 -2.51 16 23 C -0.14 -2.70 8.83 -39.59 -0.35 -3.05 16 24 C 0.07 1.37 6.96 38.18 0.27 1.64 16 25 O -0.39 -7.12 11.02 -35.23 -0.39 -7.51 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.08 1.13 7.85 -51.93 -0.41 0.72 16 31 H 0.32 5.45 7.85 -39.29 -0.31 5.14 16 32 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 33 H 0.13 2.36 7.89 -52.49 -0.41 1.95 16 34 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 35 H 0.11 1.43 8.06 -52.48 -0.42 1.00 16 36 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 37 H 0.11 2.09 6.31 -52.48 -0.33 1.76 16 38 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.10 2.11 8.14 -51.93 -0.42 1.69 16 LS Contribution 313.54 15.07 4.72 4.72 Total: -1.00 -28.67 313.54 -8.40 -37.07 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -5.91 Total: 9.03 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: -2.76 Total: -21.32 kcal Atomic # 7 Polarization: -38.69 SS G_CDS: 0.20 Total: -38.50 kcal Atomic # 8 Polarization: -7.12 SS G_CDS: -0.39 Total: -7.51 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.26 Total: 16.51 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.67 -8.40 -37.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402184649.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.080 kcal (2) G-P(sol) polarization free energy of solvation -28.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds