Wall clock time and date at job start Mon Mar 30 2020 06:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.82390 * 2 1 4 4 C 1.54380 * 109.83099 * 239.11528 * 2 1 3 5 5 C 1.55307 * 102.25182 * 219.13331 * 4 2 1 6 6 H 1.09002 * 111.12295 * 276.16593 * 5 4 2 7 7 N 1.46898 * 111.12732 * 152.05267 * 5 4 2 8 8 C 1.46896 * 111.00410 * 154.99511 * 7 5 4 9 9 H 1.08999 * 109.47327 * 324.99761 * 8 7 5 10 10 C 1.50697 * 109.46992 * 84.99794 * 8 7 5 11 11 H 1.08000 * 120.00345 * 35.00978 * 10 8 7 12 12 C 1.37884 * 119.99931 * 215.00457 * 10 8 7 13 13 N 1.31515 * 119.99656 * 175.04730 * 12 10 8 14 14 Si 1.86793 * 120.00154 * 355.05019 * 12 10 8 15 15 H 1.48506 * 109.46996 * 275.28595 * 14 12 10 16 16 H 1.48500 * 109.46920 * 35.28647 * 14 12 10 17 17 H 1.48500 * 109.47335 * 155.28784 * 14 12 10 18 18 C 1.50696 * 109.47491 * 205.00093 * 8 7 5 19 19 C 1.38240 * 119.99720 * 314.51888 * 18 8 7 20 20 C 1.38243 * 119.99680 * 179.79020 * 19 18 8 21 21 C 1.38231 * 119.99733 * 0.46224 * 20 19 18 22 22 C 1.38234 * 120.00421 * 359.77115 * 21 20 19 23 23 C 1.38225 * 119.99910 * 0.02562 * 22 21 20 24 24 C 1.54935 * 100.94658 * 34.12909 * 5 4 2 25 25 O 1.43234 * 109.83152 * 120.98173 * 2 1 3 26 26 H 1.08999 * 109.46943 * 180.88720 * 1 2 3 27 27 H 1.08996 * 109.46910 * 300.88833 * 1 2 3 28 28 H 1.09006 * 109.46888 * 60.88172 * 1 2 3 29 29 H 1.08995 * 110.85243 * 100.93966 * 4 2 1 30 30 H 1.09004 * 110.85024 * 337.31955 * 4 2 1 31 31 H 1.00904 * 111.00485 * 31.04124 * 7 5 4 32 32 H 0.96998 * 120.00171 * 180.02562 * 13 12 10 33 33 H 1.07997 * 119.99985 * 359.97438 * 19 18 8 34 34 H 1.07995 * 119.99851 * 180.25558 * 20 19 18 35 35 H 1.08006 * 119.99441 * 179.79464 * 21 20 19 36 36 H 1.08004 * 119.99858 * 180.02562 * 22 21 20 37 37 H 1.08006 * 120.00331 * 179.97438 * 23 22 21 38 38 H 1.08999 * 110.30809 * 82.46944 * 24 5 4 39 39 H 1.08999 * 110.31351 * 204.64277 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8997 1.0254 0.0000 4 6 2.0537 -0.7455 -1.2463 5 6 3.2730 -1.5216 -0.6780 6 1 4.1622 -0.8918 -0.6521 7 7 3.5212 -2.7511 -1.4427 8 6 4.9270 -3.1633 -1.3350 9 1 5.5627 -2.2789 -1.2911 10 6 5.1163 -3.9806 -0.0831 11 1 4.3306 -4.6396 0.2555 12 6 6.2928 -3.8872 0.6299 13 7 6.4212 -4.5246 1.7730 14 14 7.7042 -2.8553 -0.0278 15 1 8.5056 -3.6635 -0.9818 16 1 7.1616 -1.6614 -0.7245 17 1 8.5673 -2.4209 1.0998 18 6 5.3013 -3.9915 -2.5370 19 6 4.4553 -4.9923 -2.9773 20 6 4.7966 -5.7492 -4.0826 21 6 5.9881 -5.5115 -4.7418 22 6 6.8363 -4.5139 -4.2987 23 6 6.4931 -3.7543 -3.1960 24 6 2.7748 -1.8451 0.7530 25 8 2.0159 -0.6936 1.1552 26 1 -0.3633 -1.0275 0.0159 27 1 -0.3633 0.5276 0.8819 28 1 -0.3633 0.5001 -0.8978 29 1 2.3672 -0.0409 -2.0166 30 1 1.3012 -1.4336 -1.6316 31 1 3.2508 -2.6373 -2.4081 32 1 7.2487 -4.4587 2.2749 33 1 3.5265 -5.1809 -2.4595 34 1 4.1338 -6.5283 -4.4290 35 1 6.2562 -6.1051 -5.6034 36 1 7.7670 -4.3281 -4.8141 37 1 7.1559 -2.9752 -2.8495 38 1 2.1401 -2.7311 0.7414 39 1 3.6210 -1.9936 1.4237 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000402184649.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:02 Heat of formation + Delta-G solvation = -38.953668 kcal Electronic energy + Delta-G solvation = -19886.148711 eV Core-core repulsion = 16985.523404 eV Total energy + Delta-G solvation = -2900.625307 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.70931 -39.98360 -36.99252 -34.52754 -33.14494 -32.54173 -31.65958 -29.84243 -28.27049 -26.86772 -24.31478 -23.41397 -22.15129 -21.82603 -21.25779 -19.07943 -17.95828 -17.59587 -16.94858 -16.41053 -16.20773 -15.93159 -15.44963 -15.12304 -14.89203 -14.66274 -14.38000 -14.20198 -13.98401 -13.61856 -13.39837 -13.08322 -12.94504 -12.67389 -12.57033 -12.31023 -12.07076 -12.00263 -11.83511 -11.56724 -11.51081 -11.43550 -10.77242 -10.44949 -9.68277 -9.42659 -9.16892 -8.31045 -6.30886 0.60851 0.66606 1.23855 1.27254 1.33273 2.26832 2.81881 2.98596 3.13969 3.45203 3.55639 3.96305 4.06230 4.12531 4.22359 4.25336 4.31756 4.39807 4.43260 4.47202 4.69330 4.79752 4.83631 4.84074 4.86118 4.92870 5.01302 5.10212 5.20754 5.24420 5.31913 5.35999 5.51072 5.69494 5.73763 5.88633 6.02922 6.15062 6.27562 6.45502 6.73833 6.85825 7.31991 8.85050 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.016812 B = 0.007522 C = 0.005872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.082016 B = 3721.570635 C = 4766.865293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.066 3.934 3 H 0.087 0.913 4 C -0.141 4.141 5 C 0.065 3.935 6 H 0.041 0.959 7 N -0.662 5.662 8 C 0.217 3.783 9 H 0.014 0.986 10 C -0.472 4.472 11 H 0.040 0.960 12 C 0.019 3.981 13 N -0.941 5.941 14 Si 0.916 3.084 15 H -0.259 1.259 16 H -0.248 1.248 17 H -0.292 1.292 18 C -0.075 4.075 19 C -0.113 4.113 20 C -0.122 4.122 21 C -0.136 4.136 22 C -0.124 4.124 23 C -0.156 4.156 24 C 0.078 3.922 25 O -0.407 6.407 26 H 0.051 0.949 27 H 0.060 0.940 28 H 0.091 0.909 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.340 0.660 32 H 0.264 0.736 33 H 0.117 0.883 34 H 0.143 0.857 35 H 0.149 0.851 36 H 0.139 0.861 37 H 0.100 0.900 38 H 0.054 0.946 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.009 6.457 -13.308 15.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.009 3.991 3 H 0.105 0.895 4 C -0.179 4.179 5 C -0.046 4.046 6 H 0.059 0.941 7 N -0.294 5.294 8 C 0.109 3.891 9 H 0.031 0.969 10 C -0.510 4.510 11 H 0.058 0.942 12 C -0.180 4.180 13 N -0.581 5.581 14 Si 0.742 3.258 15 H -0.184 1.184 16 H -0.172 1.172 17 H -0.218 1.218 18 C -0.076 4.076 19 C -0.131 4.131 20 C -0.140 4.140 21 C -0.154 4.154 22 C -0.142 4.142 23 C -0.175 4.175 24 C 0.001 3.999 25 O -0.326 6.326 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.109 0.891 29 H 0.119 0.881 30 H 0.112 0.888 31 H 0.159 0.841 32 H 0.073 0.927 33 H 0.135 0.865 34 H 0.161 0.839 35 H 0.167 0.833 36 H 0.157 0.843 37 H 0.118 0.882 38 H 0.072 0.928 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.155 6.082 -12.444 15.156 hybrid contribution 1.538 0.640 0.025 1.666 sum -4.617 6.722 -12.419 14.857 Atomic orbital electron populations 1.22097 0.93311 1.02466 1.03227 1.22896 0.95673 0.96215 0.84321 0.89499 1.23350 0.96767 0.99554 0.98196 1.23010 0.97131 0.90174 0.94258 0.94096 1.60365 1.22016 1.31556 1.15482 1.18666 0.86218 0.92856 0.91394 0.96867 1.20924 1.00469 1.23524 1.06108 0.94179 1.25713 1.00787 0.96852 0.94605 1.70026 1.27435 1.45565 1.15054 0.86277 0.80416 0.80693 0.78421 1.18428 1.17244 1.21849 1.20529 0.94992 0.97939 0.94123 1.21025 1.00056 0.95284 0.96768 1.21447 0.97670 0.99438 0.95429 1.21364 0.94473 0.98396 1.01148 1.21311 1.00389 0.96192 0.96296 1.21115 0.97011 1.01656 0.97695 1.23071 0.93738 0.87551 0.95537 1.88380 1.71188 1.41156 1.31924 0.92942 0.92111 0.89065 0.88070 0.88776 0.84107 0.92689 0.86506 0.83926 0.83335 0.84300 0.88205 0.92753 0.92692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.30 9.44 71.98 0.68 -2.62 16 2 C 0.07 1.79 4.16 31.06 0.13 1.92 16 3 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 4 C -0.14 -3.65 5.96 31.85 0.19 -3.46 16 5 C 0.07 2.36 3.38 46.37 0.16 2.51 16 6 H 0.04 1.60 7.45 -2.39 -0.02 1.58 16 7 N -0.66 -25.38 5.76 -469.77 -2.70 -28.09 16 8 C 0.22 9.75 1.87 43.42 0.08 9.83 16 9 H 0.01 0.64 4.24 -2.39 -0.01 0.63 16 10 C -0.47 -26.12 8.49 25.60 0.22 -25.90 16 11 H 0.04 2.52 8.06 -2.91 -0.02 2.50 16 12 C 0.02 1.07 5.47 84.66 0.46 1.54 16 13 N -0.94 -58.58 13.96 21.45 0.30 -58.28 16 14 Si 0.92 43.97 25.07 68.60 1.72 45.69 16 15 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 16 H -0.25 -11.04 6.06 99.48 0.60 -10.44 16 17 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 18 C -0.07 -3.04 4.58 -19.87 -0.09 -3.13 16 19 C -0.11 -4.15 9.08 22.27 0.20 -3.94 16 20 C -0.12 -3.62 10.05 22.27 0.22 -3.40 16 21 C -0.14 -3.72 10.05 22.27 0.22 -3.50 16 22 C -0.12 -3.80 10.05 22.27 0.22 -3.58 16 23 C -0.16 -5.88 8.83 22.27 0.20 -5.69 16 24 C 0.08 3.23 6.96 72.64 0.51 3.73 16 25 O -0.41 -15.10 11.02 -148.98 -1.64 -16.74 16 26 H 0.05 1.21 8.14 -2.39 -0.02 1.20 16 27 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 29 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.09 2.27 7.85 -2.38 -0.02 2.26 16 31 H 0.34 11.13 7.85 -89.69 -0.70 10.42 16 32 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 33 H 0.12 4.40 7.89 -2.91 -0.02 4.38 16 34 H 0.14 3.32 8.06 -2.91 -0.02 3.29 16 35 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 36 H 0.14 3.39 8.06 -2.91 -0.02 3.37 16 37 H 0.10 3.80 6.31 -2.91 -0.02 3.78 16 38 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.05 2.66 8.14 -2.39 -0.02 2.64 16 Total: -1.00 -66.55 313.54 1.30 -65.25 By element: Atomic # 1 Polarization: 27.63 SS G_CDS: 0.22 Total: 27.86 kcal Atomic # 6 Polarization: -39.08 SS G_CDS: 3.40 Total: -35.68 kcal Atomic # 7 Polarization: -83.96 SS G_CDS: -2.41 Total: -86.37 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: -1.64 Total: -16.74 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 1.72 Total: 45.69 kcal Total: -66.55 1.30 -65.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402184649.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.294 kcal (2) G-P(sol) polarization free energy of solvation -66.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds