Wall clock time and date at job start Mon Mar 30 2020 06:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.86603 * 2 1 4 4 C 1.54105 * 109.87600 * 238.84432 * 2 1 3 5 5 C 1.54811 * 104.18499 * 238.54081 * 4 2 1 6 6 H 1.09004 * 110.90495 * 97.31795 * 5 4 2 7 7 N 1.46895 * 110.93966 * 220.90807 * 5 4 2 8 8 C 1.46902 * 111.00089 * 199.17772 * 7 5 4 9 9 C 1.50704 * 109.47060 * 179.97438 * 8 7 5 10 10 C 1.38637 * 119.74788 * 269.72554 * 9 8 7 11 11 C 1.37618 * 120.24519 * 179.72166 * 10 9 8 12 12 C 1.40720 * 119.74373 * 0.57725 * 11 10 9 13 13 C 1.41401 * 120.24361 * 179.68340 * 12 11 10 14 14 H 1.08001 * 119.99583 * 204.40264 * 13 12 11 15 15 C 1.39943 * 119.99899 * 24.40178 * 13 12 11 16 16 N 1.30827 * 120.00329 * 17.84968 * 15 13 12 17 17 Si 1.86804 * 119.99986 * 197.84895 * 15 13 12 18 18 H 1.48500 * 109.46770 * 59.99733 * 17 15 13 19 19 H 1.48497 * 109.47249 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.46862 * 300.00132 * 17 15 13 21 21 C 1.40713 * 119.51198 * 359.69862 * 12 11 10 22 22 C 1.37620 * 119.74633 * 0.02562 * 21 12 11 23 23 C 1.54997 * 102.09540 * 339.12246 * 5 4 2 24 24 O 1.43744 * 109.88095 * 121.01084 * 2 1 3 25 25 H 1.08999 * 109.46713 * 300.44220 * 1 2 3 26 26 H 1.08998 * 109.46897 * 180.44445 * 1 2 3 27 27 H 1.09002 * 109.47143 * 60.44436 * 1 2 3 28 28 H 1.08996 * 110.49079 * 357.21867 * 4 2 1 29 29 H 1.09000 * 110.48806 * 119.87308 * 4 2 1 30 30 H 1.00898 * 111.00272 * 323.12721 * 7 5 4 31 31 H 1.08996 * 109.47292 * 300.00002 * 8 7 5 32 32 H 1.09000 * 109.47248 * 60.00006 * 8 7 5 33 33 H 1.07995 * 119.87784 * 359.97438 * 10 9 8 34 34 H 1.07993 * 120.12783 * 180.27918 * 11 10 9 35 35 H 0.96995 * 120.00196 * 180.02562 * 16 15 13 36 36 H 1.08008 * 120.12660 * 179.97438 * 21 12 11 37 37 H 1.08004 * 119.87578 * 179.97438 * 22 21 12 38 38 H 1.08998 * 110.61600 * 278.52350 * 23 5 4 39 39 H 1.08998 * 110.75777 * 155.58407 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 6 2.0540 -0.7498 -1.2402 5 6 2.9196 -1.8922 -0.6552 6 1 2.3540 -2.8228 -0.6063 7 7 4.1509 -2.0705 -1.4362 8 6 4.7409 -3.3939 -1.1942 9 6 5.9989 -3.5401 -2.0109 10 6 5.9303 -4.0656 -3.2920 11 6 7.0719 -4.1983 -4.0489 12 6 8.3138 -3.8095 -3.5133 13 6 9.4943 -3.9475 -4.2793 14 1 10.4510 -4.0353 -3.7857 15 6 9.4230 -3.9702 -5.6767 16 7 8.3539 -3.5241 -6.2845 17 14 10.8545 -4.6376 -6.6742 18 1 11.0974 -6.0551 -6.3041 19 1 10.5324 -4.5513 -8.1212 20 1 12.0721 -3.8362 -6.3900 21 6 8.3721 -3.2828 -2.2098 22 6 7.2169 -3.1538 -1.4731 23 6 3.2380 -1.3631 0.7664 24 8 2.0189 -0.6964 1.1586 25 1 -0.3633 0.5207 0.8860 26 1 -0.3633 -1.0276 0.0080 27 1 -0.3633 0.5069 -0.8940 28 1 1.2246 -1.1572 -1.8184 29 1 2.6619 -0.0883 -1.8574 30 1 3.9794 -1.9256 -2.4199 31 1 4.9803 -3.4970 -0.1358 32 1 4.0290 -4.1674 -1.4826 33 1 4.9768 -4.3681 -3.6989 34 1 7.0156 -4.6036 -5.0483 35 1 8.3044 -3.5402 -7.2531 36 1 9.3201 -2.9817 -1.7887 37 1 7.2594 -2.7502 -0.4722 38 1 4.0685 -0.6579 0.7363 39 1 3.4600 -2.1871 1.4445 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000402259426.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:33 Heat of formation + Delta-G solvation = -38.906348 kcal Electronic energy + Delta-G solvation = -18805.806081 eV Core-core repulsion = 15905.182825 eV Total energy + Delta-G solvation = -2900.623255 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.62869 -37.72311 -35.42941 -33.61744 -32.24494 -30.88900 -29.30035 -28.76438 -26.00368 -25.89063 -23.19220 -21.40598 -20.99983 -20.74879 -19.83524 -17.30059 -16.37521 -16.04543 -15.54116 -15.31686 -14.91481 -14.28950 -13.89224 -13.84778 -13.47582 -13.38713 -12.66681 -12.52779 -12.37830 -12.03599 -11.93873 -11.86940 -11.49089 -11.23150 -11.14199 -10.99759 -10.82844 -10.77381 -10.46916 -10.35706 -9.71439 -9.58039 -9.39840 -9.14313 -8.16080 -7.46221 -7.30977 -6.77705 -4.36216 2.73404 3.04915 3.07274 3.08433 3.17725 3.81327 3.91675 4.40337 4.49764 4.66796 4.74297 4.93603 5.15272 5.28210 5.29150 5.51728 5.65382 5.69285 5.72244 5.79459 5.81828 5.87205 5.92097 6.01570 6.05624 6.26215 6.35773 6.40999 6.85758 6.93914 7.06443 7.26194 7.35520 7.37843 7.60066 7.66809 7.88093 8.04429 8.12911 8.29695 8.62946 8.88612 8.96967 10.16750 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.046735 B = 0.003421 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.985010 B = 8183.598654 C = 8477.893249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.075 3.925 3 H 0.067 0.933 4 C -0.154 4.154 5 C 0.051 3.949 6 H 0.054 0.946 7 N -0.673 5.673 8 C 0.124 3.876 9 C -0.216 4.216 10 C -0.095 4.095 11 C -0.166 4.166 12 C 0.113 3.887 13 C -0.463 4.463 14 H 0.077 0.923 15 C 0.076 3.924 16 N -0.793 5.793 17 Si 0.908 3.092 18 H -0.264 1.264 19 H -0.279 1.279 20 H -0.265 1.265 21 C -0.229 4.229 22 C -0.068 4.068 23 C 0.057 3.943 24 O -0.380 6.380 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.345 0.655 31 H 0.062 0.938 32 H 0.020 0.980 33 H 0.082 0.918 34 H 0.117 0.883 35 H 0.281 0.719 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.072 0.928 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.874 3.397 6.130 12.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.017 3.983 3 H 0.085 0.915 4 C -0.192 4.192 5 C -0.059 4.059 6 H 0.072 0.928 7 N -0.306 5.306 8 C -0.003 4.003 9 C -0.218 4.218 10 C -0.114 4.114 11 C -0.186 4.186 12 C 0.110 3.890 13 C -0.493 4.493 14 H 0.095 0.905 15 C -0.142 4.142 16 N -0.418 5.418 17 Si 0.732 3.268 18 H -0.188 1.188 19 H -0.204 1.204 20 H -0.190 1.190 21 C -0.248 4.248 22 C -0.086 4.086 23 C -0.020 4.020 24 O -0.299 6.299 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.094 0.906 29 H 0.104 0.896 30 H 0.164 0.836 31 H 0.080 0.920 32 H 0.038 0.962 33 H 0.100 0.900 34 H 0.134 0.866 35 H 0.091 0.909 36 H 0.109 0.891 37 H 0.105 0.895 38 H 0.090 0.910 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.692 3.763 6.563 13.098 hybrid contribution 0.139 -0.775 -1.327 1.543 sum -10.553 2.988 5.237 12.154 Atomic orbital electron populations 1.21941 0.94060 1.02629 1.02159 1.22628 0.94732 0.95857 0.85048 0.91467 1.23157 0.99838 0.97973 0.98249 1.23066 0.90810 0.97176 0.94870 0.92823 1.60672 1.24889 1.32187 1.12832 1.20619 0.93763 0.87208 0.98754 1.18871 0.92943 1.13622 0.96368 1.20517 0.96850 1.00245 0.93776 1.21269 0.92126 1.04983 1.00191 1.17625 0.93111 0.87317 0.90927 1.19580 0.94541 1.44371 0.90760 0.90493 1.25911 0.97023 0.92605 0.98626 1.69820 1.28344 1.32634 1.10975 0.86379 0.81643 0.80582 0.78188 1.18830 1.20354 1.18994 1.20979 0.96386 1.09880 0.97572 1.20331 0.92524 0.98372 0.97420 1.23559 0.87276 0.96549 0.94598 1.88849 1.40281 1.67758 1.33049 0.92070 0.92047 0.91395 0.90607 0.89600 0.83556 0.92003 0.96163 0.89962 0.86554 0.90850 0.89096 0.89473 0.91001 0.89435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.36 37.16 0.35 -1.01 16 2 C 0.08 0.84 4.06 -26.15 -0.11 0.73 16 3 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 4 C -0.15 -1.73 6.17 -25.20 -0.16 -1.88 16 5 C 0.05 0.67 3.41 -65.71 -0.22 0.45 16 6 H 0.05 0.71 7.91 -51.93 -0.41 0.30 16 7 N -0.67 -10.47 6.31 -105.87 -0.67 -11.14 16 8 C 0.12 2.13 5.67 -4.97 -0.03 2.10 16 9 C -0.22 -4.59 5.41 -104.33 -0.56 -5.16 16 10 C -0.09 -2.16 9.67 -39.66 -0.38 -2.54 16 11 C -0.17 -4.27 8.70 -38.87 -0.34 -4.61 16 12 C 0.11 3.00 5.58 -106.82 -0.60 2.40 16 13 C -0.46 -12.27 9.05 -37.74 -0.34 -12.61 16 14 H 0.08 1.96 7.91 -52.49 -0.42 1.55 16 15 C 0.08 1.91 5.14 -17.34 -0.09 1.82 16 16 N -0.79 -20.36 10.95 55.55 0.61 -19.75 16 17 Si 0.91 18.56 29.60 -169.99 -5.03 13.53 16 18 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 19 H -0.28 -5.54 7.11 56.52 0.40 -5.13 16 20 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 21 C -0.23 -5.62 9.80 -38.87 -0.38 -6.00 16 22 C -0.07 -1.51 9.67 -39.66 -0.38 -1.89 16 23 C 0.06 0.76 7.36 38.21 0.28 1.04 16 24 O -0.38 -5.14 11.19 -35.23 -0.39 -5.54 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.08 0.75 7.70 -51.93 -0.40 0.35 16 29 H 0.09 0.98 8.02 -51.93 -0.42 0.56 16 30 H 0.35 5.45 8.48 -39.29 -0.33 5.12 16 31 H 0.06 1.02 8.08 -51.93 -0.42 0.60 16 32 H 0.02 0.33 8.03 -51.93 -0.42 -0.08 16 33 H 0.08 1.69 8.06 -52.49 -0.42 1.27 16 34 H 0.12 3.09 6.16 -52.49 -0.32 2.77 16 35 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 36 H 0.09 2.12 8.06 -52.48 -0.42 1.70 16 37 H 0.09 1.75 8.06 -52.48 -0.42 1.33 16 38 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 322.00 15.07 4.85 4.85 Total: -1.00 -27.07 322.00 -9.67 -36.74 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -6.07 Total: 8.49 kcal Atomic # 6 Polarization: -24.21 SS G_CDS: -2.96 Total: -27.17 kcal Atomic # 7 Polarization: -30.84 SS G_CDS: -0.06 Total: -30.90 kcal Atomic # 8 Polarization: -5.14 SS G_CDS: -0.39 Total: -5.54 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.03 Total: 13.53 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -27.07 -9.67 -36.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402259426.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.171 kcal (2) G-P(sol) polarization free energy of solvation -27.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds