Wall clock time and date at job start Mon Mar 30 2020 06:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.86603 * 2 1 4 4 C 1.54105 * 109.87600 * 238.84432 * 2 1 3 5 5 C 1.54811 * 104.18499 * 238.54081 * 4 2 1 6 6 H 1.09004 * 110.90495 * 97.31795 * 5 4 2 7 7 N 1.46895 * 110.93966 * 220.90807 * 5 4 2 8 8 C 1.46902 * 111.00089 * 199.17772 * 7 5 4 9 9 C 1.50704 * 109.47060 * 179.97438 * 8 7 5 10 10 C 1.38637 * 119.74788 * 269.72554 * 9 8 7 11 11 C 1.37618 * 120.24519 * 179.72166 * 10 9 8 12 12 C 1.40720 * 119.74373 * 0.57725 * 11 10 9 13 13 C 1.41401 * 120.24361 * 179.68340 * 12 11 10 14 14 H 1.08001 * 119.99583 * 204.40264 * 13 12 11 15 15 C 1.39943 * 119.99899 * 24.40178 * 13 12 11 16 16 N 1.30827 * 120.00329 * 17.84968 * 15 13 12 17 17 Si 1.86804 * 119.99986 * 197.84895 * 15 13 12 18 18 H 1.48500 * 109.46770 * 59.99733 * 17 15 13 19 19 H 1.48497 * 109.47249 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.46862 * 300.00132 * 17 15 13 21 21 C 1.40713 * 119.51198 * 359.69862 * 12 11 10 22 22 C 1.37620 * 119.74633 * 0.02562 * 21 12 11 23 23 C 1.54997 * 102.09540 * 339.12246 * 5 4 2 24 24 O 1.43744 * 109.88095 * 121.01084 * 2 1 3 25 25 H 1.08999 * 109.46713 * 300.44220 * 1 2 3 26 26 H 1.08998 * 109.46897 * 180.44445 * 1 2 3 27 27 H 1.09002 * 109.47143 * 60.44436 * 1 2 3 28 28 H 1.08996 * 110.49079 * 357.21867 * 4 2 1 29 29 H 1.09000 * 110.48806 * 119.87308 * 4 2 1 30 30 H 1.00898 * 111.00272 * 323.12721 * 7 5 4 31 31 H 1.08996 * 109.47292 * 300.00002 * 8 7 5 32 32 H 1.09000 * 109.47248 * 60.00006 * 8 7 5 33 33 H 1.07995 * 119.87784 * 359.97438 * 10 9 8 34 34 H 1.07993 * 120.12783 * 180.27918 * 11 10 9 35 35 H 0.96995 * 120.00196 * 180.02562 * 16 15 13 36 36 H 1.08008 * 120.12660 * 179.97438 * 21 12 11 37 37 H 1.08004 * 119.87578 * 179.97438 * 22 21 12 38 38 H 1.08998 * 110.61600 * 278.52350 * 23 5 4 39 39 H 1.08998 * 110.75777 * 155.58407 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 6 2.0540 -0.7498 -1.2402 5 6 2.9196 -1.8922 -0.6552 6 1 2.3540 -2.8228 -0.6063 7 7 4.1509 -2.0705 -1.4362 8 6 4.7409 -3.3939 -1.1942 9 6 5.9989 -3.5401 -2.0109 10 6 5.9303 -4.0656 -3.2920 11 6 7.0719 -4.1983 -4.0489 12 6 8.3138 -3.8095 -3.5133 13 6 9.4943 -3.9475 -4.2793 14 1 10.4510 -4.0353 -3.7857 15 6 9.4230 -3.9702 -5.6767 16 7 8.3539 -3.5241 -6.2845 17 14 10.8545 -4.6376 -6.6742 18 1 11.0974 -6.0551 -6.3041 19 1 10.5324 -4.5513 -8.1212 20 1 12.0721 -3.8362 -6.3900 21 6 8.3721 -3.2828 -2.2098 22 6 7.2169 -3.1538 -1.4731 23 6 3.2380 -1.3631 0.7664 24 8 2.0189 -0.6964 1.1586 25 1 -0.3633 0.5207 0.8860 26 1 -0.3633 -1.0276 0.0080 27 1 -0.3633 0.5069 -0.8940 28 1 1.2246 -1.1572 -1.8184 29 1 2.6619 -0.0883 -1.8574 30 1 3.9794 -1.9256 -2.4199 31 1 4.9803 -3.4970 -0.1358 32 1 4.0290 -4.1674 -1.4826 33 1 4.9768 -4.3681 -3.6989 34 1 7.0156 -4.6036 -5.0483 35 1 8.3044 -3.5402 -7.2531 36 1 9.3201 -2.9817 -1.7887 37 1 7.2594 -2.7502 -0.4722 38 1 4.0685 -0.6579 0.7363 39 1 3.4600 -2.1871 1.4445 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000402259426.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:32 Heat of formation + Delta-G solvation = -54.336329 kcal Electronic energy + Delta-G solvation = -18806.475175 eV Core-core repulsion = 15905.182825 eV Total energy + Delta-G solvation = -2901.292350 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.62604 -39.48653 -36.81263 -35.35061 -33.16821 -32.37703 -31.14355 -30.19401 -27.59935 -26.82485 -24.78391 -22.87310 -22.35953 -21.79089 -21.53679 -19.20422 -17.43670 -17.27350 -16.97989 -16.47726 -16.17561 -15.85327 -15.56551 -15.10295 -15.01760 -14.51128 -14.21575 -13.79327 -13.62863 -13.39555 -13.22855 -13.16058 -12.86401 -12.82933 -12.65876 -12.32973 -12.17330 -11.98639 -11.81687 -11.66394 -11.35015 -11.23973 -10.99264 -10.67214 -9.44829 -9.29696 -9.16542 -8.63093 -6.32343 0.95727 1.17719 1.37852 1.48609 1.53369 2.20940 2.66820 2.89306 3.37237 3.56467 3.79634 3.84397 4.03183 4.22687 4.27480 4.32808 4.41354 4.45864 4.60206 4.67026 4.73006 4.76941 4.81715 4.86768 4.97348 5.00703 5.06410 5.10995 5.17339 5.29615 5.39292 5.49323 5.72716 5.87827 5.98612 6.11765 6.17796 6.25932 6.41545 6.46016 6.72087 6.95786 7.05871 8.33618 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.046735 B = 0.003421 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.985010 B = 8183.598654 C = 8477.893249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.069 3.931 3 H 0.070 0.930 4 C -0.149 4.149 5 C 0.053 3.947 6 H 0.059 0.941 7 N -0.679 5.679 8 C 0.131 3.869 9 C -0.201 4.201 10 C -0.097 4.097 11 C -0.190 4.190 12 C 0.079 3.921 13 C -0.504 4.504 14 H 0.073 0.927 15 C 0.036 3.964 16 N -0.824 5.824 17 Si 0.981 3.019 18 H -0.261 1.261 19 H -0.267 1.267 20 H -0.260 1.260 21 C -0.246 4.246 22 C -0.072 4.072 23 C 0.057 3.943 24 O -0.395 6.395 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.344 0.656 31 H 0.074 0.926 32 H 0.033 0.967 33 H 0.105 0.895 34 H 0.099 0.901 35 H 0.288 0.712 36 H 0.093 0.907 37 H 0.112 0.888 38 H 0.062 0.938 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.171 3.549 6.514 14.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.011 3.989 3 H 0.088 0.912 4 C -0.187 4.187 5 C -0.057 4.057 6 H 0.077 0.923 7 N -0.312 5.312 8 C 0.003 3.997 9 C -0.203 4.203 10 C -0.116 4.116 11 C -0.210 4.210 12 C 0.077 3.923 13 C -0.533 4.533 14 H 0.091 0.909 15 C -0.179 4.179 16 N -0.450 5.450 17 Si 0.802 3.198 18 H -0.186 1.186 19 H -0.191 1.191 20 H -0.185 1.185 21 C -0.265 4.265 22 C -0.090 4.090 23 C -0.020 4.020 24 O -0.315 6.315 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.105 0.895 28 H 0.110 0.890 29 H 0.102 0.898 30 H 0.163 0.837 31 H 0.092 0.908 32 H 0.051 0.949 33 H 0.123 0.877 34 H 0.117 0.883 35 H 0.098 0.902 36 H 0.111 0.889 37 H 0.130 0.870 38 H 0.080 0.920 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.005 3.926 6.965 14.424 hybrid contribution 0.406 -0.760 -1.317 1.574 sum -11.599 3.166 5.647 13.284 Atomic orbital electron populations 1.21937 0.92378 1.02867 1.03216 1.22820 0.96114 0.95734 0.84227 0.91190 1.23141 0.99948 0.97234 0.98330 1.23073 0.89977 0.98092 0.94555 0.92290 1.60554 1.26551 1.30981 1.13076 1.20531 0.92092 0.88519 0.98547 1.19306 0.94473 1.10661 0.95844 1.20779 0.96849 0.99699 0.94237 1.21248 0.93117 1.06496 1.00115 1.17970 0.93756 0.88498 0.92084 1.19820 0.94550 1.46879 0.92101 0.90898 1.26736 0.99890 0.92176 0.99121 1.69870 1.30227 1.33340 1.11602 0.85276 0.78034 0.79684 0.76850 1.18558 1.19095 1.18462 1.21176 0.97570 1.10330 0.97458 1.20646 0.92169 0.97879 0.98343 1.23534 0.87074 0.96540 0.94823 1.88842 1.40280 1.68048 1.34294 0.91902 0.92172 0.89529 0.89037 0.89848 0.83683 0.90790 0.94927 0.87720 0.88296 0.90178 0.88895 0.86973 0.91967 0.88803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.36 71.98 0.67 -1.59 16 2 C 0.07 1.37 4.06 30.97 0.13 1.50 16 3 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 4 C -0.15 -2.95 6.17 31.59 0.19 -2.76 16 5 C 0.05 1.26 3.41 46.22 0.16 1.42 16 6 H 0.06 1.37 7.91 -2.38 -0.02 1.35 16 7 N -0.68 -19.49 6.31 -488.87 -3.09 -22.58 16 8 C 0.13 4.13 5.67 85.56 0.48 4.62 16 9 C -0.20 -8.23 5.41 -19.67 -0.11 -8.34 16 10 C -0.10 -4.35 9.67 22.22 0.21 -4.14 16 11 C -0.19 -10.01 8.70 22.73 0.20 -9.81 16 12 C 0.08 4.34 5.58 -21.29 -0.12 4.23 16 13 C -0.50 -27.70 9.05 23.46 0.21 -27.49 16 14 H 0.07 3.88 7.91 -2.91 -0.02 3.85 16 15 C 0.04 1.81 5.14 85.26 0.44 2.25 16 16 N -0.82 -43.43 10.95 21.83 0.24 -43.19 16 17 Si 0.98 38.54 29.60 68.60 2.03 40.57 16 18 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 19 H -0.27 -9.85 7.11 99.48 0.71 -9.14 16 20 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 21 C -0.25 -12.28 9.80 22.73 0.22 -12.05 16 22 C -0.07 -3.13 9.67 22.22 0.21 -2.92 16 23 C 0.06 1.40 7.36 72.67 0.53 1.93 16 24 O -0.40 -9.92 11.19 -148.98 -1.67 -11.59 16 25 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.09 1.53 7.70 -2.39 -0.02 1.52 16 29 H 0.08 1.71 8.02 -2.39 -0.02 1.69 16 30 H 0.34 10.10 8.48 -89.70 -0.76 9.34 16 31 H 0.07 2.19 8.08 -2.39 -0.02 2.17 16 32 H 0.03 0.97 8.03 -2.39 -0.02 0.95 16 33 H 0.10 4.15 8.06 -2.91 -0.02 4.13 16 34 H 0.10 5.46 6.16 -2.91 -0.02 5.45 16 35 H 0.29 13.69 8.30 -92.71 -0.77 12.93 16 36 H 0.09 4.45 8.06 -2.91 -0.02 4.42 16 37 H 0.11 4.28 8.06 -2.91 -0.02 4.26 16 38 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -58.94 322.00 1.23 -57.70 By element: Atomic # 1 Polarization: 31.97 SS G_CDS: 0.27 Total: 32.24 kcal Atomic # 6 Polarization: -56.60 SS G_CDS: 3.45 Total: -53.15 kcal Atomic # 7 Polarization: -62.92 SS G_CDS: -2.85 Total: -65.77 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: -1.67 Total: -11.59 kcal Atomic # 14 Polarization: 38.54 SS G_CDS: 2.03 Total: 40.57 kcal Total: -58.94 1.23 -57.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402259426.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.369 kcal (2) G-P(sol) polarization free energy of solvation -58.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds