Wall clock time and date at job start Mon Mar 30 2020 06:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 110.42552 * 2 1 4 4 C 1.54475 * 110.37461 * 122.31254 * 2 1 3 5 5 C 1.54502 * 104.06855 * 142.80637 * 4 2 1 6 6 H 1.09000 * 110.51658 * 241.35411 * 5 4 2 7 7 N 1.46901 * 110.63073 * 118.70019 * 5 4 2 8 8 C 1.46897 * 111.00221 * 158.84000 * 7 5 4 9 9 C 1.50702 * 109.47373 * 179.97438 * 8 7 5 10 10 C 1.38634 * 119.75242 * 269.72447 * 9 8 7 11 11 C 1.37619 * 120.24886 * 179.76057 * 10 9 8 12 12 C 1.40721 * 119.74251 * 0.49038 * 11 10 9 13 13 C 1.41393 * 120.24148 * 179.78657 * 12 11 10 14 14 H 1.08000 * 120.00055 * 24.37649 * 13 12 11 15 15 C 1.39949 * 119.99997 * 204.37282 * 13 12 11 16 16 N 1.30817 * 119.99654 * 17.86171 * 15 13 12 17 17 Si 1.86800 * 119.99843 * 197.86384 * 15 13 12 18 18 H 1.48497 * 109.47020 * 60.00361 * 17 15 13 19 19 H 1.48499 * 109.46826 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47320 * 300.00154 * 17 15 13 21 21 C 1.40713 * 119.51225 * 359.76426 * 12 11 10 22 22 C 1.37616 * 119.74507 * 0.02562 * 21 12 11 23 23 C 1.54478 * 104.06289 * 0.02562 * 5 4 2 24 24 O 1.44426 * 104.80098 * 336.02266 * 23 5 4 25 25 H 1.09004 * 109.47112 * 180.85764 * 1 2 3 26 26 H 1.09005 * 109.47151 * 300.85537 * 1 2 3 27 27 H 1.08995 * 109.47432 * 60.85453 * 1 2 3 28 28 H 1.08999 * 110.51580 * 24.15895 * 4 2 1 29 29 H 1.08999 * 110.63010 * 261.50988 * 4 2 1 30 30 H 1.00903 * 110.99966 * 282.79168 * 7 5 4 31 31 H 1.09006 * 109.47227 * 300.00247 * 8 7 5 32 32 H 1.08998 * 109.47490 * 59.99905 * 8 7 5 33 33 H 1.07992 * 119.87264 * 0.02562 * 10 9 8 34 34 H 1.07995 * 120.12705 * 180.23333 * 11 10 9 35 35 H 0.97002 * 120.00046 * 179.97438 * 16 15 13 36 36 H 1.08007 * 120.12560 * 179.97438 * 21 12 11 37 37 H 1.08009 * 119.87786 * 179.97438 * 22 21 12 38 38 H 1.09001 * 110.37906 * 217.18831 * 23 5 4 39 39 H 1.08995 * 110.37511 * 94.84734 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9103 1.0214 0.0000 4 6 2.0678 -0.7741 1.2239 5 6 3.3177 -1.5058 0.6859 6 1 3.1955 -2.5854 0.7731 7 7 4.5229 -1.0661 1.4015 8 6 5.5984 -2.0593 1.2811 9 6 6.8157 -1.5744 2.0255 10 6 7.7670 -0.8117 1.3658 11 6 8.8801 -0.3593 2.0369 12 6 9.0556 -0.6826 3.3952 13 6 10.1975 -0.2272 4.0937 14 1 10.7221 0.6539 3.7549 15 6 10.6479 -0.9183 5.2243 16 7 10.2555 -2.1476 5.4388 17 14 11.8094 -0.0851 6.4269 18 1 11.1588 1.1280 6.9837 19 1 12.1344 -1.0230 7.5315 20 1 13.0577 0.3019 5.7221 21 6 8.0862 -1.4619 4.0532 22 6 6.9789 -1.8996 3.3633 23 6 3.3877 -1.0867 -0.7994 24 8 2.0332 -0.7228 -1.1443 25 1 -0.3633 -1.0276 0.0154 26 1 -0.3634 0.5271 0.8823 27 1 -0.3634 0.5005 -0.8975 28 1 1.3276 -1.4919 1.5772 29 1 2.3426 -0.0858 2.0231 30 1 4.8278 -0.1615 1.0744 31 1 5.2667 -3.0073 1.7048 32 1 5.8480 -2.1991 0.2293 33 1 7.6319 -0.5680 0.3224 34 1 9.6180 0.2378 1.5220 35 1 10.5680 -2.6268 6.2222 36 1 8.2112 -1.7161 5.0954 37 1 6.2336 -2.4983 3.8661 38 1 3.7245 -1.9217 -1.4138 39 1 4.0529 -0.2320 -0.9216 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000402259431.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:34 Heat of formation + Delta-G solvation = -38.399036 kcal Electronic energy + Delta-G solvation = -18802.536702 eV Core-core repulsion = 15901.935445 eV Total energy + Delta-G solvation = -2900.601257 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.71889 -37.71626 -35.43409 -33.61556 -32.22314 -30.90924 -29.31467 -28.72684 -26.11889 -25.73100 -23.12768 -21.82100 -20.96512 -20.63626 -19.87677 -17.30268 -16.52575 -16.08210 -15.62268 -15.30995 -14.70835 -14.38291 -14.02641 -13.76129 -13.32857 -13.04354 -12.85720 -12.56948 -12.20826 -12.09825 -11.97845 -11.87457 -11.51648 -11.44899 -11.10757 -11.05207 -10.89898 -10.73681 -10.46887 -10.36157 -9.88399 -9.61218 -9.37532 -9.14010 -8.11661 -7.44946 -7.32211 -6.77206 -4.35982 2.74104 3.05458 3.07532 3.08119 3.18183 3.76972 3.92100 4.42530 4.61609 4.64412 4.77510 4.92773 5.04944 5.13541 5.28887 5.46477 5.56507 5.64949 5.69770 5.78889 5.84369 5.86650 5.92951 5.99644 6.06144 6.22255 6.34595 6.43967 6.73285 6.95339 7.06311 7.28561 7.33790 7.35729 7.59743 7.64209 7.87543 8.05003 8.13895 8.29587 8.64025 8.88805 8.97365 10.17286 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.046963 B = 0.003361 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.066134 B = 8328.952655 C = 8435.041785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.066 3.934 3 H 0.067 0.933 4 C -0.142 4.142 5 C 0.054 3.946 6 H 0.088 0.912 7 N -0.672 5.672 8 C 0.123 3.877 9 C -0.216 4.216 10 C -0.085 4.085 11 C -0.228 4.228 12 C 0.113 3.887 13 C -0.464 4.464 14 H 0.077 0.923 15 C 0.076 3.924 16 N -0.792 5.792 17 Si 0.908 3.092 18 H -0.263 1.263 19 H -0.278 1.278 20 H -0.266 1.266 21 C -0.168 4.168 22 C -0.078 4.078 23 C 0.017 3.983 24 O -0.376 6.376 25 H 0.062 0.938 26 H 0.070 0.930 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.341 0.659 31 H 0.063 0.937 32 H 0.020 0.980 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.281 0.719 36 H 0.117 0.883 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.416 1.606 -6.029 13.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.008 3.992 3 H 0.085 0.915 4 C -0.181 4.181 5 C -0.057 4.057 6 H 0.106 0.894 7 N -0.304 5.304 8 C -0.004 4.004 9 C -0.218 4.218 10 C -0.104 4.104 11 C -0.248 4.248 12 C 0.111 3.889 13 C -0.493 4.493 14 H 0.095 0.905 15 C -0.142 4.142 16 N -0.417 5.417 17 Si 0.732 3.268 18 H -0.188 1.188 19 H -0.203 1.203 20 H -0.190 1.190 21 C -0.187 4.187 22 C -0.097 4.097 23 C -0.062 4.062 24 O -0.294 6.294 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.079 0.921 28 H 0.094 0.906 29 H 0.107 0.893 30 H 0.160 0.840 31 H 0.082 0.918 32 H 0.038 0.962 33 H 0.100 0.900 34 H 0.108 0.892 35 H 0.092 0.908 36 H 0.135 0.865 37 H 0.105 0.895 38 H 0.107 0.893 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.713 1.103 -5.455 13.878 hybrid contribution 1.069 0.431 -0.207 1.172 sum -11.644 1.534 -5.663 13.038 Atomic orbital electron populations 1.21790 0.93402 1.02755 1.02264 1.23027 0.95120 0.95581 0.85437 0.91526 1.23026 0.96727 1.00105 0.98217 1.22971 0.91931 1.00314 0.90468 0.89364 1.60761 1.04931 1.06081 1.58585 1.20606 0.89238 0.94074 0.96484 1.18872 0.97412 1.10058 0.95438 1.20349 0.94931 0.98213 0.96862 1.20924 0.99553 1.09305 0.94976 1.17623 0.91659 0.89293 0.90363 1.19574 1.10111 1.10854 1.08768 0.90526 1.25913 0.96398 0.94017 0.97837 1.69817 1.37603 1.08721 1.25596 0.86375 0.80561 0.80139 0.79696 1.18803 1.20335 1.19028 1.21317 0.93788 1.03648 0.99973 1.20497 0.96760 0.99021 0.93424 1.24270 0.84665 0.99895 0.97398 1.89096 1.27040 1.74748 1.38558 0.91887 0.91134 0.92121 0.90623 0.89269 0.83973 0.91834 0.96226 0.89960 0.89167 0.90806 0.86511 0.89484 0.89340 0.92282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.52 37.15 0.35 -0.92 16 2 C 0.07 0.72 3.92 -25.96 -0.10 0.62 16 3 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 4 C -0.14 -1.60 6.42 -25.17 -0.16 -1.76 16 5 C 0.05 0.69 3.42 -66.15 -0.23 0.46 16 6 H 0.09 1.12 7.88 -51.93 -0.41 0.71 16 7 N -0.67 -10.15 6.23 -106.34 -0.66 -10.81 16 8 C 0.12 2.10 5.65 -4.98 -0.03 2.07 16 9 C -0.22 -4.58 5.41 -104.33 -0.56 -5.15 16 10 C -0.08 -1.85 9.67 -39.66 -0.38 -2.24 16 11 C -0.23 -5.56 9.80 -38.87 -0.38 -5.94 16 12 C 0.11 3.01 5.58 -106.82 -0.60 2.42 16 13 C -0.46 -12.30 9.05 -37.74 -0.34 -12.64 16 14 H 0.08 1.95 7.91 -52.49 -0.41 1.54 16 15 C 0.08 1.91 5.14 -17.34 -0.09 1.83 16 16 N -0.79 -20.46 10.95 55.55 0.61 -19.85 16 17 Si 0.91 18.61 29.60 -169.99 -5.03 13.58 16 18 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 19 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 20 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 21 C -0.17 -4.36 8.70 -38.87 -0.34 -4.69 16 22 C -0.08 -1.81 9.67 -39.66 -0.38 -2.20 16 23 C 0.02 0.20 7.24 37.93 0.27 0.48 16 24 O -0.38 -4.92 11.34 -35.23 -0.40 -5.32 16 25 H 0.06 0.55 8.12 -51.93 -0.42 0.13 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.08 0.79 7.86 -51.93 -0.41 0.38 16 29 H 0.09 1.04 7.97 -51.93 -0.41 0.63 16 30 H 0.34 5.14 8.16 -39.29 -0.32 4.82 16 31 H 0.06 1.07 8.02 -51.93 -0.42 0.65 16 32 H 0.02 0.31 8.06 -51.93 -0.42 -0.10 16 33 H 0.08 1.58 8.06 -52.49 -0.42 1.16 16 34 H 0.09 2.08 8.06 -52.49 -0.42 1.66 16 35 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 36 H 0.12 3.14 6.15 -52.48 -0.32 2.82 16 37 H 0.09 1.87 8.06 -52.48 -0.42 1.45 16 38 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.06 0.72 7.61 -51.93 -0.39 0.32 16 LS Contribution 321.39 15.07 4.84 4.84 Total: -1.00 -27.19 321.39 -9.64 -36.83 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -6.03 Total: 8.40 kcal Atomic # 6 Polarization: -24.71 SS G_CDS: -2.97 Total: -27.68 kcal Atomic # 7 Polarization: -30.61 SS G_CDS: -0.05 Total: -30.66 kcal Atomic # 8 Polarization: -4.92 SS G_CDS: -0.40 Total: -5.32 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.58 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -27.19 -9.64 -36.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402259431.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.564 kcal (2) G-P(sol) polarization free energy of solvation -27.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds