Wall clock time and date at job start Mon Mar 30 2020 06:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 110.42552 * 2 1 4 4 C 1.54475 * 110.37461 * 122.31254 * 2 1 3 5 5 C 1.54502 * 104.06855 * 142.80637 * 4 2 1 6 6 H 1.09000 * 110.51658 * 241.35411 * 5 4 2 7 7 N 1.46901 * 110.63073 * 118.70019 * 5 4 2 8 8 C 1.46897 * 111.00221 * 158.84000 * 7 5 4 9 9 C 1.50702 * 109.47373 * 179.97438 * 8 7 5 10 10 C 1.38634 * 119.75242 * 269.72447 * 9 8 7 11 11 C 1.37619 * 120.24886 * 179.76057 * 10 9 8 12 12 C 1.40721 * 119.74251 * 0.49038 * 11 10 9 13 13 C 1.41393 * 120.24148 * 179.78657 * 12 11 10 14 14 H 1.08000 * 120.00055 * 24.37649 * 13 12 11 15 15 C 1.39949 * 119.99997 * 204.37282 * 13 12 11 16 16 N 1.30817 * 119.99654 * 17.86171 * 15 13 12 17 17 Si 1.86800 * 119.99843 * 197.86384 * 15 13 12 18 18 H 1.48497 * 109.47020 * 60.00361 * 17 15 13 19 19 H 1.48499 * 109.46826 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47320 * 300.00154 * 17 15 13 21 21 C 1.40713 * 119.51225 * 359.76426 * 12 11 10 22 22 C 1.37616 * 119.74507 * 0.02562 * 21 12 11 23 23 C 1.54478 * 104.06289 * 0.02562 * 5 4 2 24 24 O 1.44426 * 104.80098 * 336.02266 * 23 5 4 25 25 H 1.09004 * 109.47112 * 180.85764 * 1 2 3 26 26 H 1.09005 * 109.47151 * 300.85537 * 1 2 3 27 27 H 1.08995 * 109.47432 * 60.85453 * 1 2 3 28 28 H 1.08999 * 110.51580 * 24.15895 * 4 2 1 29 29 H 1.08999 * 110.63010 * 261.50988 * 4 2 1 30 30 H 1.00903 * 110.99966 * 282.79168 * 7 5 4 31 31 H 1.09006 * 109.47227 * 300.00247 * 8 7 5 32 32 H 1.08998 * 109.47490 * 59.99905 * 8 7 5 33 33 H 1.07992 * 119.87264 * 0.02562 * 10 9 8 34 34 H 1.07995 * 120.12705 * 180.23333 * 11 10 9 35 35 H 0.97002 * 120.00046 * 179.97438 * 16 15 13 36 36 H 1.08007 * 120.12560 * 179.97438 * 21 12 11 37 37 H 1.08009 * 119.87786 * 179.97438 * 22 21 12 38 38 H 1.09001 * 110.37906 * 217.18831 * 23 5 4 39 39 H 1.08995 * 110.37511 * 94.84734 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9103 1.0214 0.0000 4 6 2.0678 -0.7741 1.2239 5 6 3.3177 -1.5058 0.6859 6 1 3.1955 -2.5854 0.7731 7 7 4.5229 -1.0661 1.4015 8 6 5.5984 -2.0593 1.2811 9 6 6.8157 -1.5744 2.0255 10 6 7.7670 -0.8117 1.3658 11 6 8.8801 -0.3593 2.0369 12 6 9.0556 -0.6826 3.3952 13 6 10.1975 -0.2272 4.0937 14 1 10.7221 0.6539 3.7549 15 6 10.6479 -0.9183 5.2243 16 7 10.2555 -2.1476 5.4388 17 14 11.8094 -0.0851 6.4269 18 1 11.1588 1.1280 6.9837 19 1 12.1344 -1.0230 7.5315 20 1 13.0577 0.3019 5.7221 21 6 8.0862 -1.4619 4.0532 22 6 6.9789 -1.8996 3.3633 23 6 3.3877 -1.0867 -0.7994 24 8 2.0332 -0.7228 -1.1443 25 1 -0.3633 -1.0276 0.0154 26 1 -0.3634 0.5271 0.8823 27 1 -0.3634 0.5005 -0.8975 28 1 1.3276 -1.4919 1.5772 29 1 2.3426 -0.0858 2.0231 30 1 4.8278 -0.1615 1.0744 31 1 5.2667 -3.0073 1.7048 32 1 5.8480 -2.1991 0.2293 33 1 7.6319 -0.5680 0.3224 34 1 9.6180 0.2378 1.5220 35 1 10.5680 -2.6268 6.2222 36 1 8.2112 -1.7161 5.0954 37 1 6.2336 -2.4983 3.8661 38 1 3.7245 -1.9217 -1.4138 39 1 4.0529 -0.2320 -0.9216 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000402259431.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:34 Heat of formation + Delta-G solvation = -53.960144 kcal Electronic energy + Delta-G solvation = -18803.211482 eV Core-core repulsion = 15901.935445 eV Total energy + Delta-G solvation = -2901.276037 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.68980 -39.47535 -36.79193 -35.34428 -33.10393 -32.40482 -31.15299 -30.15145 -27.58316 -26.76038 -24.72583 -22.91518 -22.64010 -21.73502 -21.49409 -19.20697 -17.52937 -17.25800 -17.02280 -16.56467 -16.02985 -15.72621 -15.61024 -15.28583 -14.79744 -14.24838 -14.01005 -13.88149 -13.77930 -13.34907 -13.31043 -12.98783 -12.96729 -12.77647 -12.58255 -12.48295 -12.22858 -12.11923 -11.79865 -11.64320 -11.37353 -11.20966 -10.99769 -10.79822 -9.37052 -9.32935 -9.12927 -8.63084 -6.32363 0.96426 1.17087 1.37773 1.48859 1.53509 2.20891 2.68249 2.88772 3.43417 3.71649 3.75479 3.84010 4.04365 4.10850 4.25841 4.35079 4.36285 4.48582 4.57767 4.64036 4.70003 4.73539 4.82230 4.88700 4.97016 5.07607 5.08827 5.16286 5.17598 5.28633 5.40484 5.48201 5.72810 5.81999 5.96192 6.11480 6.16611 6.29057 6.40900 6.47889 6.72843 6.95662 7.06076 8.33778 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.046963 B = 0.003361 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.066134 B = 8328.952655 C = 8435.041785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.062 3.938 3 H 0.068 0.932 4 C -0.138 4.138 5 C 0.056 3.944 6 H 0.091 0.909 7 N -0.677 5.677 8 C 0.131 3.869 9 C -0.201 4.201 10 C -0.084 4.084 11 C -0.244 4.244 12 C 0.079 3.921 13 C -0.504 4.504 14 H 0.074 0.926 15 C 0.035 3.965 16 N -0.826 5.826 17 Si 0.981 3.019 18 H -0.261 1.261 19 H -0.267 1.267 20 H -0.259 1.259 21 C -0.192 4.192 22 C -0.085 4.085 23 C 0.018 3.982 24 O -0.392 6.392 25 H 0.062 0.938 26 H 0.086 0.914 27 H 0.062 0.938 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.342 0.658 31 H 0.068 0.932 32 H 0.037 0.963 33 H 0.116 0.884 34 H 0.094 0.906 35 H 0.288 0.712 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.617 1.786 -6.738 15.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.005 3.995 3 H 0.086 0.914 4 C -0.176 4.176 5 C -0.055 4.055 6 H 0.109 0.891 7 N -0.309 5.309 8 C 0.003 3.997 9 C -0.203 4.203 10 C -0.103 4.103 11 C -0.264 4.264 12 C 0.077 3.923 13 C -0.534 4.534 14 H 0.092 0.908 15 C -0.180 4.180 16 N -0.452 5.452 17 Si 0.802 3.198 18 H -0.186 1.186 19 H -0.192 1.192 20 H -0.184 1.184 21 C -0.212 4.212 22 C -0.104 4.104 23 C -0.060 4.060 24 O -0.311 6.311 25 H 0.081 0.919 26 H 0.105 0.895 27 H 0.081 0.919 28 H 0.104 0.896 29 H 0.103 0.897 30 H 0.161 0.839 31 H 0.087 0.913 32 H 0.055 0.945 33 H 0.134 0.866 34 H 0.113 0.887 35 H 0.098 0.902 36 H 0.115 0.885 37 H 0.119 0.881 38 H 0.114 0.886 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.933 1.282 -6.181 15.296 hybrid contribution 1.295 0.347 -0.111 1.346 sum -12.637 1.629 -6.292 14.211 Atomic orbital electron populations 1.21800 0.91842 1.03093 1.03202 1.23174 0.96416 0.95347 0.84550 0.91360 1.22998 0.96294 1.00147 0.98200 1.22993 0.91150 1.00607 0.90728 0.89086 1.60656 1.05017 1.05667 1.59585 1.20500 0.88003 0.94469 0.96745 1.19320 0.98484 1.07782 0.94690 1.20690 0.93897 0.97315 0.98354 1.21147 1.00843 1.09839 0.94537 1.17967 0.92286 0.90407 0.91633 1.19822 1.11126 1.11657 1.10757 0.90811 1.26755 0.97931 0.94313 0.98996 1.69874 1.38991 1.09925 1.26398 0.85269 0.78267 0.78989 0.77281 1.18561 1.19156 1.18351 1.21275 0.95182 1.05205 0.99529 1.20736 0.96209 0.98953 0.94521 1.24250 0.84553 1.00208 0.97018 1.89090 1.27362 1.75067 1.39569 0.91864 0.89498 0.91906 0.89624 0.89728 0.83891 0.91310 0.94487 0.86645 0.88730 0.90179 0.88470 0.88064 0.88602 0.92227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.52 71.98 0.69 -1.47 16 2 C 0.06 1.22 3.92 31.09 0.12 1.34 16 3 H 0.07 1.30 8.14 -2.39 -0.02 1.29 16 4 C -0.14 -2.78 6.42 31.61 0.20 -2.58 16 5 C 0.06 1.27 3.42 45.93 0.16 1.43 16 6 H 0.09 2.04 7.88 -2.39 -0.02 2.02 16 7 N -0.68 -18.78 6.23 -490.34 -3.05 -21.83 16 8 C 0.13 4.08 5.65 85.56 0.48 4.57 16 9 C -0.20 -8.22 5.41 -19.67 -0.11 -8.32 16 10 C -0.08 -3.55 9.67 22.22 0.21 -3.33 16 11 C -0.24 -12.00 9.80 22.73 0.22 -11.78 16 12 C 0.08 4.35 5.58 -21.29 -0.12 4.24 16 13 C -0.50 -27.72 9.05 23.46 0.21 -27.51 16 14 H 0.07 3.91 7.91 -2.91 -0.02 3.89 16 15 C 0.03 1.78 5.14 85.26 0.44 2.22 16 16 N -0.83 -43.95 10.95 21.83 0.24 -43.71 16 17 Si 0.98 38.72 29.60 68.60 2.03 40.75 16 18 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 19 H -0.27 -9.94 7.11 99.48 0.71 -9.23 16 20 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 21 C -0.19 -10.29 8.70 22.73 0.20 -10.09 16 22 C -0.09 -3.96 9.67 22.22 0.21 -3.74 16 23 C 0.02 0.40 7.24 72.48 0.52 0.93 16 24 O -0.39 -9.39 11.34 -148.98 -1.69 -11.07 16 25 H 0.06 0.96 8.12 -2.38 -0.02 0.94 16 26 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 27 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.09 1.55 7.86 -2.39 -0.02 1.54 16 29 H 0.08 1.80 7.97 -2.39 -0.02 1.78 16 30 H 0.34 9.47 8.16 -89.69 -0.73 8.74 16 31 H 0.07 2.11 8.02 -2.38 -0.02 2.09 16 32 H 0.04 1.05 8.06 -2.39 -0.02 1.03 16 33 H 0.12 4.08 8.06 -2.91 -0.02 4.05 16 34 H 0.09 4.42 8.06 -2.91 -0.02 4.40 16 35 H 0.29 13.85 8.30 -92.71 -0.77 13.08 16 36 H 0.10 5.48 6.15 -2.91 -0.02 5.46 16 37 H 0.10 4.30 8.06 -2.91 -0.02 4.28 16 38 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.06 1.30 7.61 -2.39 -0.02 1.28 16 Total: -1.00 -59.35 321.39 1.28 -58.07 By element: Atomic # 1 Polarization: 31.60 SS G_CDS: 0.30 Total: 31.90 kcal Atomic # 6 Polarization: -57.55 SS G_CDS: 3.45 Total: -54.10 kcal Atomic # 7 Polarization: -62.73 SS G_CDS: -2.81 Total: -65.54 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: -1.69 Total: -11.07 kcal Atomic # 14 Polarization: 38.72 SS G_CDS: 2.03 Total: 40.75 kcal Total: -59.35 1.28 -58.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402259431.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.110 kcal (2) G-P(sol) polarization free energy of solvation -59.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds