Wall clock time and date at job start Mon Mar 30 2020 06:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 110.27215 * 2 1 4 4 C 1.54950 * 110.39040 * 237.85109 * 2 1 3 5 5 C 1.55305 * 100.93802 * 204.59687 * 4 2 1 6 6 H 1.09005 * 111.01896 * 275.86232 * 5 4 2 7 7 N 1.46900 * 110.84254 * 152.32629 * 5 4 2 8 8 C 1.46904 * 110.99650 * 160.71061 * 7 5 4 9 9 C 1.50700 * 109.47040 * 179.97438 * 8 7 5 10 10 C 1.38642 * 119.74845 * 269.72865 * 9 8 7 11 11 C 1.37620 * 120.24545 * 179.72264 * 10 9 8 12 12 C 1.40715 * 119.74580 * 0.52292 * 11 10 9 13 13 C 1.41397 * 120.24726 * 179.72303 * 12 11 10 14 14 H 1.07994 * 120.00389 * 204.41128 * 13 12 11 15 15 C 1.39954 * 119.99559 * 24.41416 * 13 12 11 16 16 N 1.30820 * 119.99752 * 17.84580 * 15 13 12 17 17 Si 1.86794 * 119.99833 * 197.84460 * 15 13 12 18 18 H 1.48497 * 109.47220 * 60.00303 * 17 15 13 19 19 H 1.48506 * 109.47008 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47118 * 300.00178 * 17 15 13 21 21 C 1.40717 * 119.51114 * 359.75240 * 12 11 10 22 22 C 1.37621 * 119.74321 * 359.97438 * 21 12 11 23 23 C 1.54379 * 102.25593 * 34.13499 * 5 4 2 24 24 O 1.43235 * 107.58597 * 338.64232 * 23 5 4 25 25 H 1.09005 * 109.46950 * 299.36137 * 1 2 3 26 26 H 1.08994 * 109.47264 * 59.36124 * 1 2 3 27 27 H 1.09003 * 109.47340 * 179.36636 * 1 2 3 28 28 H 1.09001 * 111.12083 * 86.68091 * 4 2 1 29 29 H 1.08994 * 111.12494 * 322.51657 * 4 2 1 30 30 H 1.00895 * 111.00041 * 284.66517 * 7 5 4 31 31 H 1.09001 * 109.47873 * 300.00201 * 8 7 5 32 32 H 1.09001 * 109.46976 * 60.00569 * 8 7 5 33 33 H 1.07997 * 119.87555 * 359.97438 * 10 9 8 34 34 H 1.07994 * 120.12402 * 180.28208 * 11 10 9 35 35 H 0.97002 * 119.99729 * 180.02562 * 16 15 13 36 36 H 1.08002 * 120.12814 * 180.02562 * 21 12 11 37 37 H 1.07999 * 119.87045 * 179.97438 * 22 21 12 38 38 H 1.09002 * 109.83012 * 98.15367 * 23 5 4 39 39 H 1.09000 * 109.83252 * 219.12837 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9077 1.0224 0.0000 4 6 2.0699 -0.7729 -1.2297 5 6 3.4722 -1.2002 -0.7168 6 1 4.2014 -0.4031 -0.8626 7 7 3.9147 -2.4370 -1.3744 8 6 5.3699 -2.6022 -1.2604 9 6 5.7856 -3.8791 -1.9443 10 6 5.8317 -5.0623 -1.2232 11 6 6.2044 -6.2353 -1.8389 12 6 6.5500 -6.2286 -3.2029 13 6 6.9402 -7.4266 -3.8448 14 1 7.5627 -7.3889 -4.7264 15 6 6.5194 -8.6612 -3.3374 16 7 5.5084 -8.7177 -2.5092 17 14 7.4014 -10.2283 -3.8431 18 1 8.8290 -10.1438 -3.4431 19 1 6.7678 -11.3915 -3.1717 20 1 7.3090 -10.3952 -5.3157 21 6 6.5052 -5.0207 -3.9235 22 6 6.1241 -3.8607 -3.2885 23 6 3.2126 -1.4394 0.7860 24 8 2.0287 -0.7157 1.1413 25 1 -0.3633 0.5039 0.8957 26 1 -0.3633 0.5237 -0.8841 27 1 -0.3634 -1.0276 -0.0114 28 1 2.1516 -0.1202 -2.0989 29 1 1.4506 -1.6422 -1.4502 30 1 3.4293 -3.2388 -1.0007 31 1 5.8698 -1.7569 -1.7333 32 1 5.6491 -2.6469 -0.2077 33 1 5.5702 -5.0642 -0.1754 34 1 6.2352 -7.1567 -1.2764 35 1 5.2170 -9.5734 -2.1573 36 1 6.7680 -5.0042 -4.9709 37 1 6.0893 -2.9325 -3.8394 38 1 3.0650 -2.5034 0.9710 39 1 4.0578 -1.0751 1.3699 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000402259437.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:36 Heat of formation + Delta-G solvation = -39.134894 kcal Electronic energy + Delta-G solvation = -18825.384754 eV Core-core repulsion = 15924.751588 eV Total energy + Delta-G solvation = -2900.633166 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.70641 -37.72222 -35.45620 -33.62284 -32.23169 -30.93164 -29.30728 -28.77416 -26.17150 -25.74209 -23.15066 -21.31977 -21.08584 -20.82475 -19.85796 -17.29911 -17.07350 -15.89813 -15.45093 -15.07705 -14.80280 -14.21807 -13.98123 -13.83288 -13.45663 -13.18209 -12.73589 -12.56252 -12.46033 -12.07623 -11.93899 -11.80098 -11.50355 -11.37033 -11.12027 -11.04988 -10.96766 -10.89474 -10.46867 -10.36859 -9.62342 -9.56851 -9.39924 -9.14422 -8.12254 -7.46127 -7.30989 -6.77565 -4.36183 2.73380 3.05180 3.07457 3.08493 3.17715 3.69375 3.91801 4.36345 4.53932 4.67068 4.81362 4.94849 5.07387 5.13590 5.26843 5.50169 5.57019 5.63284 5.70149 5.80080 5.83176 5.85938 5.95482 5.98122 6.11809 6.26069 6.35005 6.40711 6.93725 6.94792 7.06511 7.26127 7.31881 7.37331 7.59803 7.65439 7.87900 8.04440 8.12682 8.29685 8.62997 8.88610 8.96998 10.16852 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.039347 B = 0.003501 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.437388 B = 7996.483727 C = 8227.463232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.072 3.928 3 H 0.068 0.932 4 C -0.140 4.140 5 C 0.055 3.945 6 H 0.090 0.910 7 N -0.670 5.670 8 C 0.124 3.876 9 C -0.218 4.218 10 C -0.095 4.095 11 C -0.166 4.166 12 C 0.113 3.887 13 C -0.463 4.463 14 H 0.077 0.923 15 C 0.076 3.924 16 N -0.792 5.792 17 Si 0.908 3.092 18 H -0.264 1.264 19 H -0.278 1.278 20 H -0.265 1.265 21 C -0.229 4.229 22 C -0.067 4.067 23 C 0.022 3.978 24 O -0.383 6.383 25 H 0.060 0.940 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.345 0.655 31 H 0.062 0.938 32 H 0.021 0.979 33 H 0.082 0.918 34 H 0.117 0.883 35 H 0.281 0.719 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.324 11.296 4.201 13.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.015 3.985 3 H 0.086 0.914 4 C -0.178 4.178 5 C -0.057 4.057 6 H 0.108 0.892 7 N -0.301 5.301 8 C -0.004 4.004 9 C -0.219 4.219 10 C -0.114 4.114 11 C -0.186 4.186 12 C 0.111 3.889 13 C -0.493 4.493 14 H 0.095 0.905 15 C -0.142 4.142 16 N -0.417 5.417 17 Si 0.732 3.268 18 H -0.188 1.188 19 H -0.203 1.203 20 H -0.190 1.190 21 C -0.249 4.249 22 C -0.086 4.086 23 C -0.057 4.057 24 O -0.302 6.302 25 H 0.079 0.921 26 H 0.087 0.913 27 H 0.081 0.919 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.164 0.836 31 H 0.081 0.919 32 H 0.039 0.961 33 H 0.101 0.899 34 H 0.135 0.865 35 H 0.092 0.908 36 H 0.109 0.891 37 H 0.105 0.895 38 H 0.087 0.913 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.536 11.405 3.907 13.266 hybrid contribution 0.500 -1.076 0.548 1.307 sum -5.036 10.329 4.455 12.324 Atomic orbital electron populations 1.21873 0.93818 1.02881 1.02134 1.22976 0.94842 0.95466 0.85233 0.91446 1.23289 0.95945 1.00879 0.97698 1.23169 0.97101 0.95017 0.90401 0.89210 1.60692 1.06828 1.03363 1.59243 1.20613 0.86218 0.96750 0.96806 1.18866 1.14734 0.93274 0.95054 1.20523 1.00679 0.93097 0.97061 1.21271 1.05783 0.96538 0.94985 1.17623 0.87922 0.92014 0.91381 1.19583 1.28201 0.90172 1.11310 0.90491 1.25915 0.93440 1.01179 0.93648 1.69821 1.19166 1.28000 1.24706 0.86375 0.80648 0.79980 0.79767 1.18838 1.20341 1.18995 1.20976 1.12064 0.93697 0.98130 1.20325 0.98434 0.96373 0.93490 1.23994 0.87738 0.96787 0.97162 1.88388 1.42584 1.65047 1.34183 0.92123 0.91251 0.91859 0.89795 0.89791 0.83554 0.91942 0.96124 0.89931 0.86541 0.90827 0.89101 0.89495 0.91301 0.91717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.63 37.16 0.36 -1.02 16 2 C 0.07 0.79 4.07 -25.70 -0.10 0.68 16 3 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 4 C -0.14 -1.59 6.27 -24.48 -0.15 -1.74 16 5 C 0.05 0.69 3.28 -65.77 -0.22 0.48 16 6 H 0.09 1.09 7.91 -51.93 -0.41 0.68 16 7 N -0.67 -10.43 6.35 -105.93 -0.67 -11.10 16 8 C 0.12 2.10 5.66 -4.97 -0.03 2.07 16 9 C -0.22 -4.62 5.41 -104.33 -0.56 -5.18 16 10 C -0.09 -2.16 9.67 -39.66 -0.38 -2.54 16 11 C -0.17 -4.28 8.70 -38.87 -0.34 -4.62 16 12 C 0.11 3.01 5.57 -106.82 -0.60 2.42 16 13 C -0.46 -12.29 9.05 -37.74 -0.34 -12.63 16 14 H 0.08 1.96 7.91 -52.49 -0.42 1.55 16 15 C 0.08 1.91 5.14 -17.34 -0.09 1.82 16 16 N -0.79 -20.40 10.95 55.55 0.61 -19.79 16 17 Si 0.91 18.59 29.59 -169.99 -5.03 13.56 16 18 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 19 H -0.28 -5.55 7.11 56.52 0.40 -5.14 16 20 H -0.27 -5.37 7.11 56.52 0.40 -4.96 16 21 C -0.23 -5.64 9.80 -38.87 -0.38 -6.02 16 22 C -0.07 -1.51 9.67 -39.66 -0.38 -1.89 16 23 C 0.02 0.28 7.46 37.88 0.28 0.56 16 24 O -0.38 -5.17 11.04 -35.23 -0.39 -5.56 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.08 1.02 8.06 -51.93 -0.42 0.60 16 30 H 0.34 5.57 8.15 -39.29 -0.32 5.25 16 31 H 0.06 1.01 8.03 -51.93 -0.42 0.60 16 32 H 0.02 0.33 8.07 -51.93 -0.42 -0.09 16 33 H 0.08 1.70 8.06 -52.49 -0.42 1.28 16 34 H 0.12 3.10 6.16 -52.49 -0.32 2.78 16 35 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 36 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 37 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 38 H 0.07 0.91 7.57 -51.93 -0.39 0.52 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 321.82 15.07 4.85 4.85 Total: -1.00 -27.21 321.82 -9.63 -36.84 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -6.06 Total: 8.81 kcal Atomic # 6 Polarization: -24.67 SS G_CDS: -2.94 Total: -27.61 kcal Atomic # 7 Polarization: -30.83 SS G_CDS: -0.06 Total: -30.89 kcal Atomic # 8 Polarization: -5.17 SS G_CDS: -0.39 Total: -5.56 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.56 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -27.21 -9.63 -36.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402259437.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.291 kcal (2) G-P(sol) polarization free energy of solvation -27.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds