Wall clock time and date at job start Mon Mar 30 2020 06:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 110.27215 * 2 1 4 4 C 1.54950 * 110.39040 * 237.85109 * 2 1 3 5 5 C 1.55305 * 100.93802 * 204.59687 * 4 2 1 6 6 H 1.09005 * 111.01896 * 275.86232 * 5 4 2 7 7 N 1.46900 * 110.84254 * 152.32629 * 5 4 2 8 8 C 1.46904 * 110.99650 * 160.71061 * 7 5 4 9 9 C 1.50700 * 109.47040 * 179.97438 * 8 7 5 10 10 C 1.38642 * 119.74845 * 269.72865 * 9 8 7 11 11 C 1.37620 * 120.24545 * 179.72264 * 10 9 8 12 12 C 1.40715 * 119.74580 * 0.52292 * 11 10 9 13 13 C 1.41397 * 120.24726 * 179.72303 * 12 11 10 14 14 H 1.07994 * 120.00389 * 204.41128 * 13 12 11 15 15 C 1.39954 * 119.99559 * 24.41416 * 13 12 11 16 16 N 1.30820 * 119.99752 * 17.84580 * 15 13 12 17 17 Si 1.86794 * 119.99833 * 197.84460 * 15 13 12 18 18 H 1.48497 * 109.47220 * 60.00303 * 17 15 13 19 19 H 1.48506 * 109.47008 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47118 * 300.00178 * 17 15 13 21 21 C 1.40717 * 119.51114 * 359.75240 * 12 11 10 22 22 C 1.37621 * 119.74321 * 359.97438 * 21 12 11 23 23 C 1.54379 * 102.25593 * 34.13499 * 5 4 2 24 24 O 1.43235 * 107.58597 * 338.64232 * 23 5 4 25 25 H 1.09005 * 109.46950 * 299.36137 * 1 2 3 26 26 H 1.08994 * 109.47264 * 59.36124 * 1 2 3 27 27 H 1.09003 * 109.47340 * 179.36636 * 1 2 3 28 28 H 1.09001 * 111.12083 * 86.68091 * 4 2 1 29 29 H 1.08994 * 111.12494 * 322.51657 * 4 2 1 30 30 H 1.00895 * 111.00041 * 284.66517 * 7 5 4 31 31 H 1.09001 * 109.47873 * 300.00201 * 8 7 5 32 32 H 1.09001 * 109.46976 * 60.00569 * 8 7 5 33 33 H 1.07997 * 119.87555 * 359.97438 * 10 9 8 34 34 H 1.07994 * 120.12402 * 180.28208 * 11 10 9 35 35 H 0.97002 * 119.99729 * 180.02562 * 16 15 13 36 36 H 1.08002 * 120.12814 * 180.02562 * 21 12 11 37 37 H 1.07999 * 119.87045 * 179.97438 * 22 21 12 38 38 H 1.09002 * 109.83012 * 98.15367 * 23 5 4 39 39 H 1.09000 * 109.83252 * 219.12837 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9077 1.0224 0.0000 4 6 2.0699 -0.7729 -1.2297 5 6 3.4722 -1.2002 -0.7168 6 1 4.2014 -0.4031 -0.8626 7 7 3.9147 -2.4370 -1.3744 8 6 5.3699 -2.6022 -1.2604 9 6 5.7856 -3.8791 -1.9443 10 6 5.8317 -5.0623 -1.2232 11 6 6.2044 -6.2353 -1.8389 12 6 6.5500 -6.2286 -3.2029 13 6 6.9402 -7.4266 -3.8448 14 1 7.5627 -7.3889 -4.7264 15 6 6.5194 -8.6612 -3.3374 16 7 5.5084 -8.7177 -2.5092 17 14 7.4014 -10.2283 -3.8431 18 1 8.8290 -10.1438 -3.4431 19 1 6.7678 -11.3915 -3.1717 20 1 7.3090 -10.3952 -5.3157 21 6 6.5052 -5.0207 -3.9235 22 6 6.1241 -3.8607 -3.2885 23 6 3.2126 -1.4394 0.7860 24 8 2.0287 -0.7157 1.1413 25 1 -0.3633 0.5039 0.8957 26 1 -0.3633 0.5237 -0.8841 27 1 -0.3634 -1.0276 -0.0114 28 1 2.1516 -0.1202 -2.0989 29 1 1.4506 -1.6422 -1.4502 30 1 3.4293 -3.2388 -1.0007 31 1 5.8698 -1.7569 -1.7333 32 1 5.6491 -2.6469 -0.2077 33 1 5.5702 -5.0642 -0.1754 34 1 6.2352 -7.1567 -1.2764 35 1 5.2170 -9.5734 -2.1573 36 1 6.7680 -5.0042 -4.9709 37 1 6.0893 -2.9325 -3.8394 38 1 3.0650 -2.5034 0.9710 39 1 4.0578 -1.0751 1.3699 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000402259437.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:36 Heat of formation + Delta-G solvation = -54.748257 kcal Electronic energy + Delta-G solvation = -18826.061800 eV Core-core repulsion = 15924.751588 eV Total energy + Delta-G solvation = -2901.310212 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.69383 -39.48306 -36.82142 -35.35908 -33.13528 -32.42705 -31.15119 -30.20562 -27.62472 -26.82133 -24.74863 -22.88788 -22.24296 -21.89427 -21.58162 -19.20520 -18.05645 -17.23066 -16.88666 -16.36267 -15.94118 -15.77609 -15.58250 -15.26651 -14.67308 -14.40159 -14.24707 -13.79668 -13.65242 -13.57490 -13.33508 -13.09423 -12.86607 -12.74653 -12.64964 -12.40327 -12.26903 -12.05195 -11.96406 -11.72710 -11.33980 -11.24357 -10.99684 -10.54421 -9.43101 -9.28623 -9.14606 -8.63277 -6.32621 0.95530 1.17534 1.37600 1.48595 1.53143 2.20695 2.65601 2.80888 3.36471 3.59579 3.80434 3.86517 4.01975 4.12401 4.23940 4.33394 4.36653 4.47595 4.59640 4.63391 4.68428 4.71894 4.80818 4.85210 4.96921 5.06283 5.06359 5.16945 5.17868 5.31478 5.39169 5.49112 5.72494 5.95460 6.03928 6.11387 6.15697 6.24027 6.40774 6.42675 6.71951 6.95511 7.05754 8.33351 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.039347 B = 0.003501 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.437388 B = 7996.483727 C = 8227.463232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.069 3.931 3 H 0.083 0.917 4 C -0.136 4.136 5 C 0.057 3.943 6 H 0.103 0.897 7 N -0.677 5.677 8 C 0.130 3.870 9 C -0.203 4.203 10 C -0.098 4.098 11 C -0.191 4.191 12 C 0.079 3.921 13 C -0.504 4.504 14 H 0.074 0.926 15 C 0.035 3.965 16 N -0.825 5.825 17 Si 0.981 3.019 18 H -0.261 1.261 19 H -0.267 1.267 20 H -0.260 1.260 21 C -0.246 4.246 22 C -0.071 4.071 23 C 0.024 3.976 24 O -0.403 6.403 25 H 0.063 0.937 26 H 0.089 0.911 27 H 0.052 0.948 28 H 0.098 0.902 29 H 0.072 0.928 30 H 0.340 0.660 31 H 0.078 0.922 32 H 0.033 0.967 33 H 0.103 0.897 34 H 0.098 0.902 35 H 0.287 0.713 36 H 0.094 0.906 37 H 0.114 0.886 38 H 0.059 0.941 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.626 12.858 4.378 14.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.012 3.988 3 H 0.101 0.899 4 C -0.174 4.174 5 C -0.054 4.054 6 H 0.121 0.879 7 N -0.307 5.307 8 C 0.002 3.998 9 C -0.204 4.204 10 C -0.117 4.117 11 C -0.211 4.211 12 C 0.077 3.923 13 C -0.534 4.534 14 H 0.092 0.908 15 C -0.180 4.180 16 N -0.451 5.451 17 Si 0.802 3.198 18 H -0.185 1.185 19 H -0.192 1.192 20 H -0.184 1.184 21 C -0.265 4.265 22 C -0.090 4.090 23 C -0.055 4.055 24 O -0.322 6.322 25 H 0.082 0.918 26 H 0.107 0.893 27 H 0.072 0.928 28 H 0.117 0.883 29 H 0.091 0.909 30 H 0.159 0.841 31 H 0.097 0.903 32 H 0.051 0.949 33 H 0.121 0.879 34 H 0.116 0.884 35 H 0.098 0.902 36 H 0.112 0.888 37 H 0.132 0.868 38 H 0.077 0.923 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.847 12.994 4.084 14.823 hybrid contribution 0.519 -1.376 0.545 1.568 sum -5.328 11.618 4.629 13.594 Atomic orbital electron populations 1.21890 0.92740 1.02627 1.03296 1.23176 0.95784 0.95775 0.84061 0.89902 1.23272 0.94814 1.00807 0.98480 1.23219 0.98094 0.93822 0.90227 0.87926 1.60618 1.05736 1.04312 1.60078 1.20541 0.87343 0.94757 0.97117 1.19324 1.11866 0.94526 0.94690 1.20785 0.99863 0.92812 0.98210 1.21247 1.07755 0.97068 0.94996 1.17966 0.89145 0.93038 0.92130 1.19827 1.29793 0.91471 1.12273 0.90830 1.26749 0.93693 1.04112 0.93409 1.69876 1.20261 1.29168 1.25779 0.85269 0.79213 0.75763 0.79558 1.18548 1.19151 1.18392 1.21183 1.12681 0.94157 0.98519 1.20651 0.97510 0.96609 0.94191 1.23947 0.87944 0.96330 0.97291 1.88375 1.42849 1.65425 1.35577 0.91808 0.89252 0.92849 0.88337 0.90879 0.84145 0.90341 0.94887 0.87885 0.88384 0.90201 0.88816 0.86797 0.92294 0.90919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 9.63 71.98 0.69 -1.71 16 2 C 0.07 1.33 4.07 31.26 0.13 1.45 16 3 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 4 C -0.14 -2.73 6.27 32.05 0.20 -2.53 16 5 C 0.06 1.30 3.28 46.18 0.15 1.45 16 6 H 0.10 2.11 7.91 -2.38 -0.02 2.09 16 7 N -0.68 -19.43 6.35 -489.06 -3.11 -22.53 16 8 C 0.13 4.04 5.66 85.56 0.48 4.53 16 9 C -0.20 -8.28 5.41 -19.67 -0.11 -8.38 16 10 C -0.10 -4.44 9.67 22.22 0.21 -4.22 16 11 C -0.19 -10.13 8.70 22.73 0.20 -9.93 16 12 C 0.08 4.37 5.57 -21.29 -0.12 4.25 16 13 C -0.50 -27.77 9.05 23.46 0.21 -27.55 16 14 H 0.07 3.91 7.91 -2.91 -0.02 3.89 16 15 C 0.04 1.80 5.14 85.26 0.44 2.24 16 16 N -0.82 -43.79 10.95 21.83 0.24 -43.55 16 17 Si 0.98 38.71 29.59 68.60 2.03 40.74 16 18 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 19 H -0.27 -9.93 7.11 99.48 0.71 -9.22 16 20 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 21 C -0.25 -12.25 9.80 22.73 0.22 -12.03 16 22 C -0.07 -3.08 9.67 22.22 0.21 -2.87 16 23 C 0.02 0.55 7.46 72.45 0.54 1.09 16 24 O -0.40 -10.12 11.04 -148.98 -1.64 -11.77 16 25 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 26 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.07 1.64 8.06 -2.39 -0.02 1.62 16 30 H 0.34 10.44 8.15 -89.70 -0.73 9.70 16 31 H 0.08 2.23 8.03 -2.39 -0.02 2.21 16 32 H 0.03 0.96 8.07 -2.39 -0.02 0.94 16 33 H 0.10 4.16 8.06 -2.91 -0.02 4.13 16 34 H 0.10 5.47 6.16 -2.91 -0.02 5.45 16 35 H 0.29 13.82 8.30 -92.71 -0.77 13.05 16 36 H 0.09 4.46 8.06 -2.91 -0.02 4.44 16 37 H 0.11 4.29 8.06 -2.91 -0.02 4.26 16 38 H 0.06 1.49 7.57 -2.39 -0.02 1.47 16 39 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -59.60 321.82 1.29 -58.31 By element: Atomic # 1 Polarization: 32.72 SS G_CDS: 0.30 Total: 33.01 kcal Atomic # 6 Polarization: -57.69 SS G_CDS: 3.47 Total: -54.21 kcal Atomic # 7 Polarization: -63.22 SS G_CDS: -2.87 Total: -66.08 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: -1.64 Total: -11.77 kcal Atomic # 14 Polarization: 38.71 SS G_CDS: 2.03 Total: 40.74 kcal Total: -59.60 1.29 -58.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402259437.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.561 kcal (2) G-P(sol) polarization free energy of solvation -59.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds