Wall clock time and date at job start Mon Mar 30 2020 06:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.67911 * 2 1 4 4 C 1.54996 * 110.62025 * 122.96661 * 2 1 3 5 5 C 1.54813 * 102.09209 * 155.51707 * 4 2 1 6 6 H 1.09008 * 110.48326 * 97.80117 * 5 4 2 7 7 N 1.46902 * 110.49106 * 220.44150 * 5 4 2 8 8 C 1.46901 * 111.00196 * 205.00395 * 7 5 4 9 9 C 1.50697 * 109.47064 * 179.97438 * 8 7 5 10 10 C 1.38631 * 119.75159 * 269.73100 * 9 8 7 11 11 C 1.37620 * 120.24472 * 179.72038 * 10 9 8 12 12 C 1.40719 * 119.74620 * 0.57220 * 11 10 9 13 13 C 1.41397 * 120.24314 * 179.67858 * 12 11 10 14 14 H 1.07998 * 119.99840 * 155.30665 * 13 12 11 15 15 C 1.39943 * 119.99904 * 335.31247 * 13 12 11 16 16 N 1.30821 * 120.00427 * 342.23005 * 15 13 12 17 17 Si 1.86805 * 119.99872 * 162.23252 * 15 13 12 18 18 H 1.48501 * 109.47304 * 94.65924 * 17 15 13 19 19 H 1.48496 * 109.46985 * 214.66471 * 17 15 13 20 20 H 1.48507 * 109.46998 * 334.65959 * 17 15 13 21 21 C 1.40714 * 119.50837 * 359.70071 * 12 11 10 22 22 C 1.37614 * 119.74637 * 0.02562 * 21 12 11 23 23 C 1.54093 * 104.18881 * 339.12411 * 5 4 2 24 24 O 1.43738 * 107.29569 * 357.96696 * 23 5 4 25 25 H 1.09002 * 109.46424 * 297.03485 * 1 2 3 26 26 H 1.08994 * 109.46704 * 57.03168 * 1 2 3 27 27 H 1.08990 * 109.47370 * 177.03671 * 1 2 3 28 28 H 1.09000 * 110.91017 * 273.72016 * 4 2 1 29 29 H 1.08997 * 110.90519 * 37.32374 * 4 2 1 30 30 H 1.00904 * 110.99915 * 328.96013 * 7 5 4 31 31 H 1.08995 * 109.46946 * 300.00490 * 8 7 5 32 32 H 1.09006 * 109.46995 * 60.00181 * 8 7 5 33 33 H 1.07996 * 119.87625 * 359.97381 * 10 9 8 34 34 H 1.08002 * 120.12791 * 180.27208 * 11 10 9 35 35 H 0.97002 * 120.00101 * 180.02562 * 16 15 13 36 36 H 1.08002 * 120.12167 * 180.02562 * 21 12 11 37 37 H 1.08003 * 119.87281 * 180.02562 * 22 21 12 38 38 H 1.08998 * 109.88405 * 117.39475 * 23 5 4 39 39 H 1.09007 * 109.87786 * 238.39020 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9149 1.0198 0.0000 4 6 2.0759 -0.7894 1.2171 5 6 3.4795 -1.2169 0.7233 6 1 4.2408 -0.5334 1.0996 7 7 3.7733 -2.5948 1.1391 8 6 5.2222 -2.8211 1.2256 9 6 5.4840 -4.2418 1.6545 10 6 5.5942 -4.5442 3.0029 11 6 5.8275 -5.8392 3.4062 12 6 5.9662 -6.8560 2.4433 13 6 6.2128 -8.1889 2.8456 14 1 5.9328 -9.0083 2.2002 15 6 6.8196 -8.4462 4.0801 16 7 7.4671 -7.4946 4.7019 17 14 6.7050 -10.1488 4.8403 18 1 7.9104 -10.9358 4.4760 19 1 6.6215 -10.0265 6.3179 20 1 5.4917 -10.8375 4.3313 21 6 5.8581 -6.5363 1.0772 22 6 5.6189 -5.2355 0.6972 23 6 3.3839 -1.1255 -0.8119 24 8 2.0384 -0.7353 -1.1338 25 1 -0.3632 0.4671 0.9154 26 1 -0.3632 0.5592 -0.8622 27 1 -0.3633 -1.0262 -0.0531 28 1 2.1510 -0.1477 2.0950 29 1 1.4550 -1.6606 1.4258 30 1 3.3204 -2.8129 2.0141 31 1 5.6761 -2.6460 0.2503 32 1 5.6540 -2.1362 1.9555 33 1 5.4925 -3.7613 3.7398 34 1 5.9086 -6.0733 4.4574 35 1 7.8880 -7.6732 5.5574 36 1 5.9625 -7.3090 0.3299 37 1 5.5352 -4.9880 -0.3507 38 1 4.0853 -0.3784 -1.1832 39 1 3.6070 -2.0958 -1.2556 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000402259440.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:38 Heat of formation + Delta-G solvation = -37.790431 kcal Electronic energy + Delta-G solvation = -18806.512766 eV Core-core repulsion = 15905.937900 eV Total energy + Delta-G solvation = -2900.574866 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.61287 -37.71103 -35.42054 -33.60879 -32.18823 -30.91189 -29.29499 -28.78355 -26.09290 -25.92135 -23.18922 -21.32821 -20.97450 -20.64585 -19.81651 -17.29396 -16.86838 -16.00061 -15.43296 -15.27007 -14.74436 -14.25965 -14.20300 -13.82153 -13.34078 -13.20984 -12.67038 -12.46231 -12.38546 -12.00377 -11.93275 -11.68936 -11.47374 -11.28062 -11.20173 -11.05022 -10.95276 -10.82472 -10.51825 -10.34436 -9.64100 -9.56555 -9.39595 -9.12865 -8.14961 -7.45131 -7.29912 -6.77205 -4.35275 2.73118 3.06069 3.08542 3.10565 3.18017 3.82939 3.92561 4.33128 4.46808 4.66170 4.76614 4.95185 5.15064 5.24690 5.29569 5.52300 5.53582 5.67891 5.70561 5.75044 5.82747 5.87709 5.93767 6.02992 6.07327 6.27688 6.37017 6.41904 6.90459 6.94628 7.07305 7.26912 7.34979 7.38186 7.61206 7.67315 7.88865 8.05666 8.13554 8.30588 8.63904 8.89607 8.97850 10.17467 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.043526 B = 0.003404 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.135818 B = 8224.579680 C = 8312.543574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.073 3.927 3 H 0.066 0.934 4 C -0.154 4.154 5 C 0.051 3.949 6 H 0.054 0.946 7 N -0.673 5.673 8 C 0.123 3.877 9 C -0.216 4.216 10 C -0.095 4.095 11 C -0.166 4.166 12 C 0.113 3.887 13 C -0.463 4.463 14 H 0.077 0.923 15 C 0.076 3.924 16 N -0.794 5.794 17 Si 0.906 3.094 18 H -0.271 1.271 19 H -0.276 1.276 20 H -0.260 1.260 21 C -0.228 4.228 22 C -0.068 4.068 23 C 0.056 3.944 24 O -0.375 6.375 25 H 0.068 0.932 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.344 0.656 31 H 0.061 0.939 32 H 0.020 0.980 33 H 0.082 0.918 34 H 0.116 0.884 35 H 0.280 0.720 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.052 0.948 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.580 11.854 -3.266 14.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.015 3.985 3 H 0.084 0.916 4 C -0.192 4.192 5 C -0.060 4.060 6 H 0.072 0.928 7 N -0.305 5.305 8 C -0.004 4.004 9 C -0.217 4.217 10 C -0.114 4.114 11 C -0.186 4.186 12 C 0.110 3.890 13 C -0.492 4.492 14 H 0.095 0.905 15 C -0.141 4.141 16 N -0.419 5.419 17 Si 0.731 3.269 18 H -0.196 1.196 19 H -0.201 1.201 20 H -0.184 1.184 21 C -0.248 4.248 22 C -0.087 4.087 23 C -0.021 4.021 24 O -0.294 6.294 25 H 0.087 0.913 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.106 0.894 30 H 0.163 0.837 31 H 0.080 0.920 32 H 0.038 0.962 33 H 0.100 0.900 34 H 0.134 0.866 35 H 0.091 0.909 36 H 0.109 0.891 37 H 0.105 0.895 38 H 0.070 0.930 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.587 11.606 -3.884 14.400 hybrid contribution 0.546 -0.210 1.469 1.581 sum -7.041 11.396 -2.415 13.612 Atomic orbital electron populations 1.21759 0.93276 1.03147 1.02087 1.23021 0.95156 0.94935 0.85358 0.91650 1.23401 0.96362 1.01141 0.98316 1.22921 0.96154 0.91128 0.95808 0.92824 1.60765 1.11684 1.20338 1.37756 1.20633 0.86303 0.94612 0.98901 1.18859 1.16206 0.93271 0.93394 1.20508 1.00928 0.96102 0.93840 1.21265 1.05611 0.91969 0.99710 1.17627 0.87380 0.93259 0.90685 1.19606 1.34771 0.93152 1.01700 0.90456 1.25913 0.92692 0.98975 0.96568 1.69830 1.23325 1.34299 1.14462 0.86333 0.79772 0.82257 0.78564 1.19585 1.20062 1.18396 1.20983 1.13133 0.95072 0.95586 1.20333 0.98740 0.93083 0.96500 1.23248 0.83513 1.00730 0.94643 1.88877 1.28337 1.73465 1.38707 0.91308 0.92044 0.91534 0.90528 0.89354 0.83718 0.92015 0.96168 0.89975 0.86600 0.90932 0.89078 0.89462 0.93028 0.88539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.66 37.16 0.36 -0.95 16 2 C 0.07 0.79 3.98 -25.68 -0.10 0.69 16 3 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 4 C -0.15 -1.68 6.05 -24.72 -0.15 -1.83 16 5 C 0.05 0.65 3.38 -66.19 -0.22 0.42 16 6 H 0.05 0.66 7.83 -51.92 -0.41 0.25 16 7 N -0.67 -10.45 6.20 -106.37 -0.66 -11.11 16 8 C 0.12 2.12 5.66 -4.98 -0.03 2.09 16 9 C -0.22 -4.62 5.41 -104.33 -0.56 -5.18 16 10 C -0.09 -2.17 9.67 -39.66 -0.38 -2.55 16 11 C -0.17 -4.29 8.70 -38.87 -0.34 -4.63 16 12 C 0.11 3.02 5.57 -106.82 -0.60 2.43 16 13 C -0.46 -12.34 9.05 -37.74 -0.34 -12.68 16 14 H 0.08 1.99 7.91 -52.49 -0.41 1.57 16 15 C 0.08 1.91 5.14 -17.34 -0.09 1.82 16 16 N -0.79 -20.50 10.97 55.55 0.61 -19.89 16 17 Si 0.91 18.63 29.59 -169.99 -5.03 13.60 16 18 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 19 H -0.28 -5.53 7.11 56.52 0.40 -5.12 16 20 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 21 C -0.23 -5.66 9.80 -38.87 -0.38 -6.04 16 22 C -0.07 -1.53 9.67 -39.66 -0.38 -1.91 16 23 C 0.06 0.74 7.50 37.73 0.28 1.02 16 24 O -0.37 -5.20 11.22 -35.23 -0.40 -5.60 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.09 1.03 7.87 -51.93 -0.41 0.62 16 30 H 0.34 5.33 8.32 -39.29 -0.33 5.00 16 31 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 32 H 0.02 0.34 8.02 -51.93 -0.42 -0.08 16 33 H 0.08 1.70 8.06 -52.49 -0.42 1.27 16 34 H 0.12 3.10 6.18 -52.49 -0.32 2.77 16 35 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 36 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 37 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.10 1.41 7.93 -51.92 -0.41 0.99 16 LS Contribution 321.97 15.07 4.85 4.85 Total: -1.00 -27.58 321.97 -9.63 -37.21 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -6.07 Total: 8.23 kcal Atomic # 6 Polarization: -24.36 SS G_CDS: -2.94 Total: -27.30 kcal Atomic # 7 Polarization: -30.95 SS G_CDS: -0.05 Total: -31.00 kcal Atomic # 8 Polarization: -5.20 SS G_CDS: -0.40 Total: -5.60 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.60 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -27.58 -9.63 -37.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402259440.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.581 kcal (2) G-P(sol) polarization free energy of solvation -27.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds