Wall clock time and date at job start Mon Mar 30 2020 06:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.67911 * 2 1 4 4 C 1.54996 * 110.62025 * 122.96661 * 2 1 3 5 5 C 1.54813 * 102.09209 * 155.51707 * 4 2 1 6 6 H 1.09008 * 110.48326 * 97.80117 * 5 4 2 7 7 N 1.46902 * 110.49106 * 220.44150 * 5 4 2 8 8 C 1.46901 * 111.00196 * 205.00395 * 7 5 4 9 9 C 1.50697 * 109.47064 * 179.97438 * 8 7 5 10 10 C 1.38631 * 119.75159 * 269.73100 * 9 8 7 11 11 C 1.37620 * 120.24472 * 179.72038 * 10 9 8 12 12 C 1.40719 * 119.74620 * 0.57220 * 11 10 9 13 13 C 1.41397 * 120.24314 * 179.67858 * 12 11 10 14 14 H 1.07998 * 119.99840 * 155.30665 * 13 12 11 15 15 C 1.39943 * 119.99904 * 335.31247 * 13 12 11 16 16 N 1.30821 * 120.00427 * 342.23005 * 15 13 12 17 17 Si 1.86805 * 119.99872 * 162.23252 * 15 13 12 18 18 H 1.48501 * 109.47304 * 94.65924 * 17 15 13 19 19 H 1.48496 * 109.46985 * 214.66471 * 17 15 13 20 20 H 1.48507 * 109.46998 * 334.65959 * 17 15 13 21 21 C 1.40714 * 119.50837 * 359.70071 * 12 11 10 22 22 C 1.37614 * 119.74637 * 0.02562 * 21 12 11 23 23 C 1.54093 * 104.18881 * 339.12411 * 5 4 2 24 24 O 1.43738 * 107.29569 * 357.96696 * 23 5 4 25 25 H 1.09002 * 109.46424 * 297.03485 * 1 2 3 26 26 H 1.08994 * 109.46704 * 57.03168 * 1 2 3 27 27 H 1.08990 * 109.47370 * 177.03671 * 1 2 3 28 28 H 1.09000 * 110.91017 * 273.72016 * 4 2 1 29 29 H 1.08997 * 110.90519 * 37.32374 * 4 2 1 30 30 H 1.00904 * 110.99915 * 328.96013 * 7 5 4 31 31 H 1.08995 * 109.46946 * 300.00490 * 8 7 5 32 32 H 1.09006 * 109.46995 * 60.00181 * 8 7 5 33 33 H 1.07996 * 119.87625 * 359.97381 * 10 9 8 34 34 H 1.08002 * 120.12791 * 180.27208 * 11 10 9 35 35 H 0.97002 * 120.00101 * 180.02562 * 16 15 13 36 36 H 1.08002 * 120.12167 * 180.02562 * 21 12 11 37 37 H 1.08003 * 119.87281 * 180.02562 * 22 21 12 38 38 H 1.08998 * 109.88405 * 117.39475 * 23 5 4 39 39 H 1.09007 * 109.87786 * 238.39020 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9149 1.0198 0.0000 4 6 2.0759 -0.7894 1.2171 5 6 3.4795 -1.2169 0.7233 6 1 4.2408 -0.5334 1.0996 7 7 3.7733 -2.5948 1.1391 8 6 5.2222 -2.8211 1.2256 9 6 5.4840 -4.2418 1.6545 10 6 5.5942 -4.5442 3.0029 11 6 5.8275 -5.8392 3.4062 12 6 5.9662 -6.8560 2.4433 13 6 6.2128 -8.1889 2.8456 14 1 5.9328 -9.0083 2.2002 15 6 6.8196 -8.4462 4.0801 16 7 7.4671 -7.4946 4.7019 17 14 6.7050 -10.1488 4.8403 18 1 7.9104 -10.9358 4.4760 19 1 6.6215 -10.0265 6.3179 20 1 5.4917 -10.8375 4.3313 21 6 5.8581 -6.5363 1.0772 22 6 5.6189 -5.2355 0.6972 23 6 3.3839 -1.1255 -0.8119 24 8 2.0384 -0.7353 -1.1338 25 1 -0.3632 0.4671 0.9154 26 1 -0.3632 0.5592 -0.8622 27 1 -0.3633 -1.0262 -0.0531 28 1 2.1510 -0.1477 2.0950 29 1 1.4550 -1.6606 1.4258 30 1 3.3204 -2.8129 2.0141 31 1 5.6761 -2.6460 0.2503 32 1 5.6540 -2.1362 1.9555 33 1 5.4925 -3.7613 3.7398 34 1 5.9086 -6.0733 4.4574 35 1 7.8880 -7.6732 5.5574 36 1 5.9625 -7.3090 0.3299 37 1 5.5352 -4.9880 -0.3507 38 1 4.0853 -0.3784 -1.1832 39 1 3.6070 -2.0958 -1.2556 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000402259440.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:38 Heat of formation + Delta-G solvation = -53.812661 kcal Electronic energy + Delta-G solvation = -18807.207542 eV Core-core repulsion = 15905.937900 eV Total energy + Delta-G solvation = -2901.269642 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.59341 -39.48433 -36.79685 -35.34938 -33.09109 -32.39377 -31.15270 -30.21821 -27.60807 -26.93702 -24.78962 -22.87972 -22.22079 -21.68484 -21.51583 -19.21260 -17.79781 -17.34115 -16.91688 -16.36931 -16.07681 -15.78558 -15.60109 -15.38222 -14.81266 -14.43566 -14.08230 -13.79682 -13.63158 -13.34473 -13.25002 -13.07689 -12.91262 -12.68747 -12.47680 -12.47060 -12.16316 -12.10916 -11.94148 -11.71998 -11.35075 -11.24995 -10.99347 -10.57950 -9.43222 -9.29183 -9.16220 -8.63916 -6.32912 0.94773 1.16750 1.37731 1.48092 1.54054 2.20918 2.68780 2.95376 3.28559 3.54667 3.80273 3.89295 4.14040 4.20499 4.28244 4.30898 4.44788 4.48583 4.58364 4.63497 4.67595 4.77457 4.83467 4.89348 4.95237 5.01692 5.05539 5.15008 5.17074 5.30162 5.38302 5.48573 5.72151 5.94470 6.00346 6.11279 6.19147 6.25159 6.40974 6.48636 6.71408 6.95276 7.05135 8.33312 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.043526 B = 0.003404 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.135818 B = 8224.579680 C = 8312.543574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.068 3.932 3 H 0.083 0.917 4 C -0.149 4.149 5 C 0.051 3.949 6 H 0.068 0.932 7 N -0.682 5.682 8 C 0.131 3.869 9 C -0.201 4.201 10 C -0.096 4.096 11 C -0.190 4.190 12 C 0.080 3.920 13 C -0.504 4.504 14 H 0.072 0.928 15 C 0.036 3.964 16 N -0.826 5.826 17 Si 0.981 3.019 18 H -0.263 1.263 19 H -0.265 1.265 20 H -0.260 1.260 21 C -0.246 4.246 22 C -0.073 4.073 23 C 0.055 3.945 24 O -0.399 6.399 25 H 0.090 0.910 26 H 0.064 0.936 27 H 0.053 0.947 28 H 0.099 0.901 29 H 0.077 0.923 30 H 0.344 0.656 31 H 0.071 0.929 32 H 0.034 0.966 33 H 0.106 0.894 34 H 0.099 0.901 35 H 0.288 0.712 36 H 0.092 0.908 37 H 0.111 0.889 38 H 0.068 0.932 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.187 13.492 -3.060 16.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.011 3.989 3 H 0.101 0.899 4 C -0.187 4.187 5 C -0.059 4.059 6 H 0.086 0.914 7 N -0.315 5.315 8 C 0.003 3.997 9 C -0.203 4.203 10 C -0.115 4.115 11 C -0.209 4.209 12 C 0.077 3.923 13 C -0.533 4.533 14 H 0.090 0.910 15 C -0.179 4.179 16 N -0.452 5.452 17 Si 0.802 3.198 18 H -0.187 1.187 19 H -0.189 1.189 20 H -0.184 1.184 21 C -0.266 4.266 22 C -0.092 4.092 23 C -0.022 4.022 24 O -0.319 6.319 25 H 0.109 0.891 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.118 0.882 29 H 0.096 0.904 30 H 0.163 0.837 31 H 0.089 0.911 32 H 0.052 0.948 33 H 0.124 0.876 34 H 0.117 0.883 35 H 0.098 0.902 36 H 0.111 0.889 37 H 0.129 0.871 38 H 0.086 0.914 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.201 13.264 -3.691 16.026 hybrid contribution 0.687 -0.550 1.307 1.575 sum -7.514 12.714 -2.385 14.960 Atomic orbital electron populations 1.21782 0.92184 1.02674 1.03457 1.23270 0.96127 0.95347 0.84193 0.89934 1.23389 0.94854 1.01179 0.99243 1.22976 0.97673 0.89640 0.95598 0.91374 1.60637 1.10293 1.22689 1.37851 1.20526 0.87726 0.91788 0.99637 1.19315 1.13040 0.95381 0.92524 1.20776 0.99951 0.95533 0.95259 1.21248 1.07486 0.93326 0.98860 1.17967 0.88594 0.93931 0.91765 1.19834 1.36893 0.93283 1.03336 0.90972 1.26739 0.91628 1.03153 0.96369 1.69874 1.23864 1.36399 1.15059 0.85218 0.79762 0.76979 0.77890 1.18725 1.18883 1.18403 1.21177 1.13872 0.96408 0.95115 1.20644 0.98010 0.92441 0.98087 1.23240 0.83823 1.00334 0.94847 1.88857 1.28678 1.74098 1.40264 0.89096 0.91659 0.92815 0.88225 0.90394 0.83723 0.91065 0.94833 0.87597 0.88295 0.90165 0.88942 0.87145 0.91413 0.90475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.66 71.98 0.70 -1.56 16 2 C 0.07 1.28 3.98 31.28 0.12 1.41 16 3 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 4 C -0.15 -2.82 6.05 31.90 0.19 -2.62 16 5 C 0.05 1.16 3.38 45.90 0.16 1.32 16 6 H 0.07 1.40 7.83 -2.38 -0.02 1.38 16 7 N -0.68 -19.60 6.20 -490.46 -3.04 -22.64 16 8 C 0.13 4.18 5.66 85.56 0.48 4.66 16 9 C -0.20 -8.34 5.41 -19.68 -0.11 -8.44 16 10 C -0.10 -4.36 9.67 22.22 0.21 -4.15 16 11 C -0.19 -10.05 8.70 22.73 0.20 -9.85 16 12 C 0.08 4.41 5.57 -21.29 -0.12 4.29 16 13 C -0.50 -27.93 9.05 23.46 0.21 -27.72 16 14 H 0.07 3.89 7.91 -2.91 -0.02 3.86 16 15 C 0.04 1.83 5.14 85.26 0.44 2.27 16 16 N -0.83 -43.71 10.97 21.83 0.24 -43.47 16 17 Si 0.98 38.76 29.59 68.60 2.03 40.79 16 18 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 19 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 20 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 21 C -0.25 -12.48 9.80 22.73 0.22 -12.26 16 22 C -0.07 -3.26 9.67 22.22 0.21 -3.04 16 23 C 0.06 1.34 7.50 72.35 0.54 1.88 16 24 O -0.40 -10.39 11.22 -148.98 -1.67 -12.06 16 25 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.05 0.97 8.14 -2.39 -0.02 0.96 16 28 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.08 1.66 7.87 -2.39 -0.02 1.64 16 30 H 0.34 9.91 8.32 -89.69 -0.75 9.17 16 31 H 0.07 2.16 8.08 -2.39 -0.02 2.14 16 32 H 0.03 1.00 8.02 -2.38 -0.02 0.98 16 33 H 0.11 4.21 8.06 -2.91 -0.02 4.18 16 34 H 0.10 5.49 6.18 -2.91 -0.02 5.47 16 35 H 0.29 13.70 8.30 -92.71 -0.77 12.93 16 36 H 0.09 4.50 8.06 -2.91 -0.02 4.47 16 37 H 0.11 4.34 8.06 -2.91 -0.02 4.32 16 38 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.08 2.15 7.93 -2.38 -0.02 2.14 16 Total: -1.00 -60.73 321.97 1.31 -59.42 By element: Atomic # 1 Polarization: 31.51 SS G_CDS: 0.28 Total: 31.79 kcal Atomic # 6 Polarization: -57.29 SS G_CDS: 3.47 Total: -53.82 kcal Atomic # 7 Polarization: -63.31 SS G_CDS: -2.80 Total: -66.11 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: -1.67 Total: -12.06 kcal Atomic # 14 Polarization: 38.76 SS G_CDS: 2.03 Total: 40.79 kcal Total: -60.73 1.31 -59.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402259440.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.610 kcal (2) G-P(sol) polarization free energy of solvation -60.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds