Wall clock time and date at job start Mon Mar 30 2020 06:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46899 * 111.00036 * 2 1 4 4 H 1.09002 * 110.05656 * 326.41895 * 3 2 1 5 5 C 1.53881 * 110.03162 * 87.83459 * 3 2 1 6 6 C 1.54262 * 106.59507 * 119.28451 * 5 3 2 7 7 C 1.54884 * 104.20099 * 23.61225 * 6 5 3 8 8 H 1.08995 * 110.91374 * 80.44202 * 7 6 5 9 9 O 1.42894 * 110.75787 * 203.74122 * 7 6 5 10 10 C 1.35676 * 117.00233 * 270.18841 * 9 7 6 11 11 C 1.39313 * 119.81451 * 5.88481 * 10 9 7 12 12 C 1.36435 * 120.18281 * 180.02562 * 11 10 9 13 13 C 1.40832 * 119.81484 * 0.27461 * 12 11 10 14 14 C 1.41215 * 120.18352 * 179.72465 * 13 12 11 15 15 H 1.07994 * 119.99785 * 151.69211 * 14 13 12 16 16 C 1.39891 * 119.99732 * 331.68892 * 14 13 12 17 17 N 1.30883 * 119.99658 * 160.58118 * 16 14 13 18 18 Si 1.86798 * 120.00030 * 340.58570 * 16 14 13 19 19 H 1.48503 * 109.47058 * 90.68660 * 18 16 14 20 20 H 1.48496 * 109.46822 * 210.68359 * 18 16 14 21 21 H 1.48499 * 109.47434 * 330.68400 * 18 16 14 22 22 C 1.40843 * 119.63748 * 359.43193 * 13 12 11 23 23 C 1.36430 * 119.81039 * 0.56740 * 22 13 12 24 24 C 1.54264 * 110.03320 * 205.00036 * 3 2 1 25 25 H 1.09003 * 109.47631 * 59.99478 * 1 2 3 26 26 H 1.09000 * 109.47526 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47368 * 299.99688 * 1 2 3 28 28 H 1.00901 * 110.99935 * 236.05446 * 2 1 3 29 29 H 1.09000 * 110.03126 * 238.56890 * 5 3 2 30 30 H 1.08999 * 110.02926 * 359.94920 * 5 3 2 31 31 H 1.09002 * 110.48383 * 264.93025 * 6 5 3 32 32 H 1.09007 * 110.48259 * 142.29327 * 6 5 3 33 33 H 1.07994 * 119.90913 * 0.02562 * 11 10 9 34 34 H 1.08005 * 120.09566 * 180.02562 * 12 11 10 35 35 H 0.97003 * 119.99787 * 180.02562 * 17 16 14 36 36 H 1.08001 * 120.09152 * 180.29515 * 22 13 12 37 37 H 1.08002 * 119.91051 * 179.70031 * 23 22 13 38 38 H 1.08998 * 110.48475 * 98.42898 * 24 3 2 39 39 H 1.08996 * 110.48989 * 335.78600 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3330 2.0261 -0.5663 5 6 2.1333 1.8831 1.4447 6 6 3.6279 2.1987 1.6595 7 6 4.1732 2.4460 0.2311 8 1 3.9378 3.4555 -0.1059 9 8 5.5820 2.2126 0.1793 10 6 6.3916 3.2700 0.4387 11 6 5.8396 4.4785 0.8576 12 6 6.6467 5.5468 1.1200 13 6 8.0408 5.4270 0.9608 14 6 8.8829 6.5294 1.2246 15 1 9.8995 6.3665 1.5508 16 6 8.4004 7.8325 1.0633 17 7 9.0087 8.8328 1.6485 18 14 6.8877 8.1450 0.0128 19 1 5.6723 8.0815 0.8637 20 1 6.9865 9.4896 -0.6096 21 1 6.8017 7.1123 -1.0509 22 6 8.5912 4.1997 0.5429 23 6 7.7702 3.1412 0.2846 24 6 3.4111 1.3940 -0.6125 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8306 -0.5260 -0.7814 29 1 1.5379 2.7861 1.5794 30 1 1.8088 1.1141 2.1457 31 1 4.1346 1.3504 2.1197 32 1 3.7448 3.0925 2.2725 33 1 4.7700 4.5701 0.9750 34 1 6.2173 6.4830 1.4451 35 1 8.6739 9.7363 1.5370 36 1 9.6597 4.0983 0.4230 37 1 8.1901 2.2008 -0.0406 38 1 3.3696 1.7005 -1.6577 39 1 3.8828 0.4159 -0.5193 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403401090.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:30 Heat of formation + Delta-G solvation = -41.325817 kcal Electronic energy + Delta-G solvation = -19236.862787 eV Core-core repulsion = 16336.134615 eV Total energy + Delta-G solvation = -2900.728171 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.01417 -39.37666 -37.84544 -35.35506 -34.63418 -31.86192 -31.59551 -29.73236 -28.38106 -26.42377 -25.17637 -23.67379 -22.82333 -21.21705 -20.83095 -19.39172 -19.10967 -17.39597 -17.02969 -16.66412 -16.32799 -15.79430 -15.60241 -15.36486 -14.89525 -14.60439 -14.39937 -14.18059 -14.17344 -13.85960 -13.43833 -12.99561 -12.92031 -12.61304 -12.50271 -12.23982 -12.17934 -12.03252 -11.95384 -11.87476 -11.52252 -11.41418 -11.15333 -10.86926 -9.71740 -9.41215 -9.00241 -8.88242 -6.37744 0.74120 0.79607 1.24471 1.38426 1.47638 2.11628 2.48857 2.59116 3.28404 3.46378 3.57926 3.66764 3.91883 4.16664 4.17752 4.30054 4.34140 4.46221 4.53259 4.58126 4.61726 4.67155 4.76902 4.81728 4.88090 4.99117 5.03612 5.06854 5.08781 5.16961 5.24368 5.26942 5.36829 5.61514 5.74258 5.87374 6.09624 6.13226 6.32293 6.46541 6.60921 6.81158 6.96019 8.20845 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.034639 B = 0.004409 C = 0.004121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.152310 B = 6348.445542 C = 6793.388939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.697 5.697 3 C 0.090 3.910 4 H 0.060 0.940 5 C -0.107 4.107 6 C -0.141 4.141 7 C 0.073 3.927 8 H 0.073 0.927 9 O -0.321 6.321 10 C 0.013 3.987 11 C -0.155 4.155 12 C -0.223 4.223 13 C 0.048 3.952 14 C -0.485 4.485 15 H 0.057 0.943 16 C 0.047 3.953 17 N -0.852 5.852 18 Si 0.964 3.036 19 H -0.257 1.257 20 H -0.276 1.276 21 H -0.258 1.258 22 C -0.184 4.184 23 C -0.109 4.109 24 C -0.113 4.113 25 H 0.027 0.973 26 H 0.077 0.923 27 H 0.062 0.938 28 H 0.349 0.651 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.128 0.872 34 H 0.103 0.897 35 H 0.293 0.707 36 H 0.115 0.885 37 H 0.130 0.870 38 H 0.081 0.919 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.241 -12.786 -4.913 22.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.329 5.329 3 C -0.020 4.020 4 H 0.078 0.922 5 C -0.145 4.145 6 C -0.179 4.179 7 C 0.016 3.984 8 H 0.091 0.909 9 O -0.236 6.236 10 C -0.032 4.032 11 C -0.174 4.174 12 C -0.242 4.242 13 C 0.045 3.955 14 C -0.515 4.515 15 H 0.075 0.925 16 C -0.167 4.167 17 N -0.479 5.479 18 Si 0.788 3.212 19 H -0.182 1.182 20 H -0.203 1.203 21 H -0.182 1.182 22 C -0.203 4.203 23 C -0.127 4.127 24 C -0.151 4.151 25 H 0.046 0.954 26 H 0.096 0.904 27 H 0.081 0.919 28 H 0.168 0.832 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.146 0.854 34 H 0.121 0.879 35 H 0.103 0.897 36 H 0.133 0.867 37 H 0.147 0.853 38 H 0.099 0.901 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -17.070 -12.789 -4.203 21.740 hybrid contribution -0.175 1.092 -0.846 1.393 sum -17.245 -11.697 -5.049 21.440 Atomic orbital electron populations 1.22279 0.86835 1.02595 1.00600 1.60567 1.08727 1.13104 1.50470 1.22048 0.94012 0.90023 0.95928 0.92236 1.22106 0.94442 1.01147 0.96814 1.22797 0.96940 1.01731 0.96424 1.23430 0.78566 0.99640 0.96729 0.90874 1.85881 1.17204 1.33637 1.86924 1.18722 0.90435 0.87262 1.06737 1.20776 0.99472 0.93164 1.03978 1.20816 0.94040 0.98895 1.10443 1.17861 0.92281 0.93748 0.91579 1.19368 0.99659 0.90556 1.41920 0.92470 1.26775 1.00109 0.95274 0.94526 1.69760 1.41046 1.01924 1.35218 0.85559 0.78325 0.77538 0.79782 1.18223 1.20294 1.18187 1.20840 0.99020 0.93753 1.06672 1.20048 0.90505 0.99137 1.03036 1.22517 0.94198 0.99526 0.98836 0.95406 0.90387 0.91875 0.83237 0.90947 0.90307 0.91465 0.91983 0.85422 0.87945 0.89710 0.86737 0.85255 0.90073 0.89734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.53 127.69 1.34 1.67 16 2 N -0.70 -11.16 6.52 -510.83 -3.33 -14.48 16 3 C 0.09 1.61 3.25 45.64 0.15 1.76 16 4 H 0.06 0.98 7.81 -2.39 -0.02 0.96 16 5 C -0.11 -2.13 6.55 31.32 0.21 -1.92 16 6 C -0.14 -3.61 6.34 31.67 0.20 -3.41 16 7 C 0.07 2.05 2.68 31.88 0.09 2.13 16 8 H 0.07 2.08 6.30 -2.39 -0.02 2.06 16 9 O -0.32 -11.46 9.91 -89.94 -0.89 -12.35 16 10 C 0.01 0.51 6.70 22.79 0.15 0.67 16 11 C -0.16 -6.54 8.79 22.11 0.19 -6.34 16 12 C -0.22 -10.72 7.27 22.48 0.16 -10.55 16 13 C 0.05 2.48 5.13 -21.28 -0.11 2.37 16 14 C -0.49 -27.64 9.56 23.40 0.22 -27.42 16 15 H 0.06 3.48 8.06 -2.91 -0.02 3.46 16 16 C 0.05 2.55 5.39 85.23 0.46 3.01 16 17 N -0.85 -47.42 13.93 21.82 0.30 -47.12 16 18 Si 0.96 43.29 24.57 68.60 1.69 44.98 16 19 H -0.26 -10.85 6.44 99.48 0.64 -10.20 16 20 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 21 H -0.26 -11.85 7.06 99.48 0.70 -11.15 16 22 C -0.18 -8.60 9.74 22.48 0.22 -8.38 16 23 C -0.11 -4.57 9.92 22.11 0.22 -4.35 16 24 C -0.11 -2.40 5.98 31.67 0.19 -2.21 16 25 H 0.03 0.31 8.07 -2.39 -0.02 0.29 16 26 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.35 4.80 8.40 -89.69 -0.75 4.05 16 29 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.08 1.58 7.92 -2.39 -0.02 1.56 16 31 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.06 1.67 7.60 -2.38 -0.02 1.65 16 33 H 0.13 4.61 5.47 -2.91 -0.02 4.59 16 34 H 0.10 4.91 4.47 -2.91 -0.01 4.90 16 35 H 0.29 14.61 8.30 -92.71 -0.77 13.84 16 36 H 0.11 5.07 8.06 -2.91 -0.02 5.05 16 37 H 0.13 4.70 8.06 -2.91 -0.02 4.68 16 38 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.08 1.86 7.96 -2.39 -0.02 1.84 16 Total: -1.00 -60.72 310.54 1.69 -59.03 By element: Atomic # 1 Polarization: 22.70 SS G_CDS: 0.22 Total: 22.92 kcal Atomic # 6 Polarization: -56.67 SS G_CDS: 3.70 Total: -52.98 kcal Atomic # 7 Polarization: -58.58 SS G_CDS: -3.02 Total: -61.60 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: -0.89 Total: -12.35 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 1.69 Total: 44.98 kcal Total: -60.72 1.69 -59.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403401090.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.705 kcal (2) G-P(sol) polarization free energy of solvation -60.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds