Wall clock time and date at job start Mon Mar 30 2020 06:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46900 * 111.00010 * 2 1 4 4 H 1.08998 * 110.05708 * 326.41138 * 3 2 1 5 5 C 1.54270 * 110.03293 * 87.82697 * 3 2 1 6 6 C 1.54894 * 104.19276 * 142.89387 * 5 3 2 7 7 C 1.54888 * 102.75030 * 322.05954 * 6 5 3 8 8 H 1.08999 * 110.60028 * 279.20947 * 7 6 5 9 9 O 1.42896 * 110.48673 * 156.62231 * 7 6 5 10 10 C 1.35670 * 117.00513 * 88.10622 * 9 7 6 11 11 C 1.39315 * 119.81434 * 354.32508 * 10 9 7 12 12 C 1.36432 * 120.18879 * 180.02562 * 11 10 9 13 13 C 1.40840 * 119.80993 * 359.97430 * 12 11 10 14 14 C 1.41216 * 120.18373 * 180.02562 * 13 12 11 15 15 H 1.07992 * 120.00319 * 153.87249 * 14 13 12 16 16 C 1.39894 * 119.99722 * 333.60011 * 14 13 12 17 17 N 1.30885 * 119.99944 * 346.94641 * 16 14 13 18 18 Si 1.86794 * 120.00009 * 166.94626 * 16 14 13 19 19 H 1.48503 * 109.46988 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47100 * 120.00040 * 18 16 14 21 21 H 1.48499 * 109.47455 * 239.99959 * 18 16 14 22 22 C 1.40839 * 119.64156 * 0.27752 * 13 12 11 23 23 C 1.36443 * 119.80462 * 359.44321 * 22 13 12 24 24 C 1.53878 * 110.03171 * 204.99571 * 3 2 1 25 25 H 1.08998 * 109.47381 * 300.00731 * 1 2 3 26 26 H 1.09004 * 109.46584 * 60.00489 * 1 2 3 27 27 H 1.09002 * 109.47449 * 180.02562 * 1 2 3 28 28 H 1.00895 * 111.00426 * 236.04272 * 2 1 3 29 29 H 1.09000 * 110.48882 * 261.57388 * 5 3 2 30 30 H 1.09004 * 110.48614 * 24.22217 * 5 3 2 31 31 H 1.09004 * 110.75580 * 203.74370 * 6 5 3 32 32 H 1.09002 * 110.75240 * 80.37744 * 6 5 3 33 33 H 1.08004 * 119.90934 * 359.97438 * 11 10 9 34 34 H 1.07998 * 120.10227 * 179.97438 * 12 11 10 35 35 H 0.96998 * 119.99621 * 179.97438 * 17 16 14 36 36 H 1.07993 * 120.09875 * 179.72236 * 22 13 12 37 37 H 1.08001 * 119.89946 * 180.25172 * 23 22 13 38 38 H 1.09000 * 110.02972 * 121.42745 * 24 3 2 39 39 H 1.08998 * 110.07064 * 0.02562 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3331 2.0261 -0.5664 5 6 2.1335 1.8845 1.4483 6 6 3.4304 2.7312 1.4293 7 6 4.3545 1.9199 0.4875 8 1 4.8150 1.0901 1.0236 9 8 5.3573 2.7655 -0.0795 10 6 6.5066 2.9162 0.6255 11 6 6.6182 2.3564 1.8963 12 6 7.7703 2.5037 2.6121 13 6 8.8488 3.2236 2.0626 14 6 10.0451 3.3805 2.7963 15 1 10.9799 3.5357 2.2783 16 6 10.0185 3.3405 4.1944 17 7 8.8765 3.4152 4.8296 18 14 11.6126 3.1806 5.1548 19 1 12.7558 3.1158 4.2092 20 1 11.7739 4.3576 6.0458 21 1 11.5755 1.9418 5.9730 22 6 8.7259 3.7909 0.7794 23 6 7.5688 3.6294 0.0745 24 6 3.4076 1.3939 -0.6109 25 1 -0.3634 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 1.8306 -0.5261 -0.7813 29 1 1.2776 2.5036 1.7170 30 1 2.2337 1.0489 2.1411 31 1 3.8614 2.8002 2.4281 32 1 3.2379 3.7234 1.0210 33 1 5.7900 1.8049 2.3165 34 1 7.8551 2.0695 3.5974 35 1 8.8580 3.3871 5.7990 36 1 9.5466 4.3482 0.3527 37 1 7.4744 4.0603 -0.9113 38 1 3.4305 2.0595 -1.4738 39 1 3.7027 0.3876 -0.9080 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403401092.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:32 Heat of formation + Delta-G solvation = -26.009142 kcal Electronic energy + Delta-G solvation = -19148.361054 eV Core-core repulsion = 16248.297063 eV Total energy + Delta-G solvation = -2900.063991 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.43916 -37.82124 -36.16312 -33.82915 -33.08900 -29.63756 -29.23495 -28.57709 -27.14012 -24.71901 -24.30086 -21.55959 -20.93646 -20.15398 -19.56019 -17.42395 -17.13726 -15.79692 -15.63030 -15.24898 -15.02128 -14.27564 -13.93445 -13.78096 -13.53754 -13.11391 -12.83631 -12.52312 -12.33263 -12.01797 -11.73018 -11.63232 -11.28196 -11.21737 -11.06552 -11.04726 -10.83146 -10.72473 -10.61760 -10.29919 -9.73809 -9.69716 -9.28777 -9.00980 -8.61906 -7.60456 -6.92955 -6.65228 -4.22796 2.79510 3.00851 3.11090 3.16419 3.23154 3.98797 4.04524 4.12243 4.60712 4.66883 4.73087 5.16422 5.20428 5.28594 5.42933 5.48387 5.55187 5.66421 5.70732 5.76993 5.81924 5.94503 6.03576 6.10338 6.17925 6.28763 6.37713 6.44283 6.81238 6.90476 6.94820 7.11571 7.19429 7.34007 7.47466 7.60790 7.97023 8.05068 8.20938 8.50887 8.71076 8.95138 9.04086 10.28702 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.037405 B = 0.003957 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.379557 B = 7074.506330 C = 7550.952035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.689 5.689 3 C 0.084 3.916 4 H 0.049 0.951 5 C -0.111 4.111 6 C -0.146 4.146 7 C 0.092 3.908 8 H 0.075 0.925 9 O -0.323 6.323 10 C -0.003 4.003 11 C -0.175 4.175 12 C -0.129 4.129 13 C 0.085 3.915 14 C -0.462 4.462 15 H 0.076 0.924 16 C 0.072 3.928 17 N -0.806 5.806 18 Si 0.909 3.091 19 H -0.262 1.262 20 H -0.276 1.276 21 H -0.273 1.273 22 C -0.194 4.194 23 C -0.118 4.118 24 C -0.121 4.121 25 H 0.064 0.936 26 H 0.020 0.980 27 H 0.065 0.935 28 H 0.341 0.659 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.097 0.903 34 H 0.124 0.876 35 H 0.277 0.723 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.077 0.923 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.174 -4.648 -5.571 14.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.321 5.321 3 C -0.026 4.026 4 H 0.067 0.933 5 C -0.150 4.150 6 C -0.184 4.184 7 C 0.035 3.965 8 H 0.093 0.907 9 O -0.239 6.239 10 C -0.046 4.046 11 C -0.194 4.194 12 C -0.149 4.149 13 C 0.082 3.918 14 C -0.493 4.493 15 H 0.094 0.906 16 C -0.143 4.143 17 N -0.433 5.433 18 Si 0.734 3.266 19 H -0.186 1.186 20 H -0.201 1.201 21 H -0.199 1.199 22 C -0.214 4.214 23 C -0.137 4.137 24 C -0.159 4.159 25 H 0.083 0.917 26 H 0.038 0.962 27 H 0.084 0.916 28 H 0.159 0.841 29 H 0.080 0.920 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.115 0.885 34 H 0.142 0.858 35 H 0.088 0.912 36 H 0.117 0.883 37 H 0.113 0.887 38 H 0.096 0.904 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.265 -4.623 -4.837 13.972 hybrid contribution 0.379 0.177 -0.119 0.435 sum -11.886 -4.446 -4.956 13.624 Atomic orbital electron populations 1.22224 0.88066 1.01634 1.00323 1.60591 1.07587 1.13958 1.49953 1.22161 0.94754 0.88765 0.96905 0.93290 1.22351 0.97282 0.99314 0.96012 1.23022 0.95266 0.99350 1.00758 1.22855 0.87598 0.92647 0.93419 0.90724 1.85839 1.24726 1.65490 1.47818 1.18586 0.86555 1.06876 0.92571 1.20677 0.99373 1.04728 0.94628 1.21038 0.93125 1.00409 1.00318 1.17615 0.93353 0.89661 0.91136 1.19496 0.94800 1.44146 0.90854 0.90608 1.25862 0.97578 0.92496 0.98413 1.69823 1.26594 1.37143 1.09762 0.86257 0.82323 0.78479 0.79586 1.18552 1.20129 1.19874 1.20616 0.96866 1.05995 0.97931 1.19615 0.92606 1.02418 0.99051 1.22338 0.93198 1.01691 0.98662 0.91707 0.96161 0.91592 0.84053 0.92038 0.90283 0.90693 0.90788 0.88487 0.85813 0.91176 0.88311 0.88667 0.90448 0.90692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.53 60.06 0.63 0.86 16 2 N -0.69 -7.12 6.62 -112.81 -0.75 -7.87 16 3 C 0.08 0.96 3.25 -66.59 -0.22 0.75 16 4 H 0.05 0.54 7.81 -51.93 -0.41 0.13 16 5 C -0.11 -1.38 6.49 -25.07 -0.16 -1.55 16 6 C -0.15 -2.22 6.32 -24.74 -0.16 -2.37 16 7 C 0.09 1.53 2.68 -25.07 -0.07 1.47 16 8 H 0.07 1.31 6.33 -51.93 -0.33 0.98 16 9 O -0.32 -6.63 9.84 -18.71 -0.18 -6.82 16 10 C 0.00 -0.06 6.68 -38.78 -0.26 -0.32 16 11 C -0.18 -4.16 8.70 -39.83 -0.35 -4.51 16 12 C -0.13 -3.40 8.63 -39.25 -0.34 -3.74 16 13 C 0.08 2.28 5.57 -106.80 -0.59 1.69 16 14 C -0.46 -12.41 9.05 -37.83 -0.34 -12.76 16 15 H 0.08 1.96 7.88 -52.49 -0.41 1.54 16 16 C 0.07 1.83 5.22 -17.34 -0.09 1.74 16 17 N -0.81 -21.12 10.80 55.55 0.60 -20.52 16 18 Si 0.91 18.97 29.58 -169.99 -5.03 13.94 16 19 H -0.26 -5.41 7.11 56.52 0.40 -5.00 16 20 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 21 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 22 C -0.19 -4.85 9.75 -39.25 -0.38 -5.23 16 23 C -0.12 -2.78 9.92 -39.83 -0.40 -3.18 16 24 C -0.12 -1.59 6.24 -25.61 -0.16 -1.74 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.02 0.16 8.07 -51.93 -0.42 -0.26 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.34 3.10 8.09 -39.29 -0.32 2.79 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.08 1.02 8.05 -51.93 -0.42 0.60 16 31 H 0.07 1.22 7.45 -51.93 -0.39 0.84 16 32 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.10 2.08 5.38 -52.48 -0.28 1.80 16 34 H 0.12 3.35 6.11 -52.49 -0.32 3.03 16 35 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 36 H 0.10 2.29 8.06 -52.49 -0.42 1.87 16 37 H 0.10 2.02 8.06 -52.49 -0.42 1.60 16 38 H 0.08 1.02 8.07 -51.93 -0.42 0.60 16 39 H 0.07 0.91 7.47 -51.93 -0.39 0.52 16 LS Contribution 314.88 15.07 4.75 4.75 Total: -1.00 -28.14 314.88 -9.26 -37.41 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -5.77 Total: 8.00 kcal Atomic # 6 Polarization: -26.02 SS G_CDS: -2.88 Total: -28.90 kcal Atomic # 7 Polarization: -28.24 SS G_CDS: -0.15 Total: -28.39 kcal Atomic # 8 Polarization: -6.63 SS G_CDS: -0.18 Total: -6.82 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.03 Total: 13.94 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.14 -9.26 -37.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403401092.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.396 kcal (2) G-P(sol) polarization free energy of solvation -28.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds