Wall clock time and date at job start Mon Mar 30 2020 06:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46900 * 111.00010 * 2 1 4 4 H 1.08998 * 110.05708 * 326.41138 * 3 2 1 5 5 C 1.54270 * 110.03293 * 87.82697 * 3 2 1 6 6 C 1.54894 * 104.19276 * 142.89387 * 5 3 2 7 7 C 1.54888 * 102.75030 * 322.05954 * 6 5 3 8 8 H 1.08999 * 110.60028 * 279.20947 * 7 6 5 9 9 O 1.42896 * 110.48673 * 156.62231 * 7 6 5 10 10 C 1.35670 * 117.00513 * 88.10622 * 9 7 6 11 11 C 1.39315 * 119.81434 * 354.32508 * 10 9 7 12 12 C 1.36432 * 120.18879 * 180.02562 * 11 10 9 13 13 C 1.40840 * 119.80993 * 359.97430 * 12 11 10 14 14 C 1.41216 * 120.18373 * 180.02562 * 13 12 11 15 15 H 1.07992 * 120.00319 * 153.87249 * 14 13 12 16 16 C 1.39894 * 119.99722 * 333.60011 * 14 13 12 17 17 N 1.30885 * 119.99944 * 346.94641 * 16 14 13 18 18 Si 1.86794 * 120.00009 * 166.94626 * 16 14 13 19 19 H 1.48503 * 109.46988 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47100 * 120.00040 * 18 16 14 21 21 H 1.48499 * 109.47455 * 239.99959 * 18 16 14 22 22 C 1.40839 * 119.64156 * 0.27752 * 13 12 11 23 23 C 1.36443 * 119.80462 * 359.44321 * 22 13 12 24 24 C 1.53878 * 110.03171 * 204.99571 * 3 2 1 25 25 H 1.08998 * 109.47381 * 300.00731 * 1 2 3 26 26 H 1.09004 * 109.46584 * 60.00489 * 1 2 3 27 27 H 1.09002 * 109.47449 * 180.02562 * 1 2 3 28 28 H 1.00895 * 111.00426 * 236.04272 * 2 1 3 29 29 H 1.09000 * 110.48882 * 261.57388 * 5 3 2 30 30 H 1.09004 * 110.48614 * 24.22217 * 5 3 2 31 31 H 1.09004 * 110.75580 * 203.74370 * 6 5 3 32 32 H 1.09002 * 110.75240 * 80.37744 * 6 5 3 33 33 H 1.08004 * 119.90934 * 359.97438 * 11 10 9 34 34 H 1.07998 * 120.10227 * 179.97438 * 12 11 10 35 35 H 0.96998 * 119.99621 * 179.97438 * 17 16 14 36 36 H 1.07993 * 120.09875 * 179.72236 * 22 13 12 37 37 H 1.08001 * 119.89946 * 180.25172 * 23 22 13 38 38 H 1.09000 * 110.02972 * 121.42745 * 24 3 2 39 39 H 1.08998 * 110.07064 * 0.02562 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3331 2.0261 -0.5664 5 6 2.1335 1.8845 1.4483 6 6 3.4304 2.7312 1.4293 7 6 4.3545 1.9199 0.4875 8 1 4.8150 1.0901 1.0236 9 8 5.3573 2.7655 -0.0795 10 6 6.5066 2.9162 0.6255 11 6 6.6182 2.3564 1.8963 12 6 7.7703 2.5037 2.6121 13 6 8.8488 3.2236 2.0626 14 6 10.0451 3.3805 2.7963 15 1 10.9799 3.5357 2.2783 16 6 10.0185 3.3405 4.1944 17 7 8.8765 3.4152 4.8296 18 14 11.6126 3.1806 5.1548 19 1 12.7558 3.1158 4.2092 20 1 11.7739 4.3576 6.0458 21 1 11.5755 1.9418 5.9730 22 6 8.7259 3.7909 0.7794 23 6 7.5688 3.6294 0.0745 24 6 3.4076 1.3939 -0.6109 25 1 -0.3634 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 1.8306 -0.5261 -0.7813 29 1 1.2776 2.5036 1.7170 30 1 2.2337 1.0489 2.1411 31 1 3.8614 2.8002 2.4281 32 1 3.2379 3.7234 1.0210 33 1 5.7900 1.8049 2.3165 34 1 7.8551 2.0695 3.5974 35 1 8.8580 3.3871 5.7990 36 1 9.5466 4.3482 0.3527 37 1 7.4744 4.0603 -0.9113 38 1 3.4305 2.0595 -1.4738 39 1 3.7027 0.3876 -0.9080 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403401092.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:31 Heat of formation + Delta-G solvation = -42.041353 kcal Electronic energy + Delta-G solvation = -19149.056263 eV Core-core repulsion = 16248.297063 eV Total energy + Delta-G solvation = -2900.759199 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.92783 -39.25635 -37.74832 -35.30653 -34.54593 -31.54728 -31.04839 -29.72651 -28.31564 -26.59671 -25.13413 -23.24646 -22.76631 -21.37795 -20.84590 -19.29089 -18.84671 -17.26530 -16.74233 -16.48059 -16.20962 -15.92821 -15.68462 -15.06778 -14.87197 -14.46604 -14.25950 -14.15889 -13.73297 -13.40603 -13.25139 -13.11817 -12.82565 -12.72593 -12.45670 -12.32649 -12.15591 -12.07492 -11.76107 -11.71334 -11.59362 -11.32573 -11.12523 -10.85968 -9.54879 -9.39741 -8.85252 -8.55256 -6.23148 0.94290 1.06057 1.40170 1.51306 1.55102 2.24093 2.60570 2.75609 3.26643 3.54417 3.58861 3.72418 4.10195 4.25316 4.32146 4.37377 4.42230 4.43992 4.54675 4.59153 4.61856 4.76765 4.86010 4.88007 4.98593 5.02685 5.07752 5.11762 5.17019 5.18900 5.29745 5.40099 5.56540 5.68940 6.00642 6.08394 6.10056 6.25646 6.47192 6.58873 6.82826 6.97278 7.12514 8.40668 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.037405 B = 0.003957 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.379557 B = 7074.506330 C = 7550.952035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.699 5.699 3 C 0.092 3.908 4 H 0.061 0.939 5 C -0.103 4.103 6 C -0.145 4.145 7 C 0.079 3.921 8 H 0.063 0.937 9 O -0.327 6.327 10 C 0.006 3.994 11 C -0.176 4.176 12 C -0.151 4.151 13 C 0.052 3.948 14 C -0.498 4.498 15 H 0.075 0.925 16 C 0.030 3.970 17 N -0.838 5.838 18 Si 0.984 3.016 19 H -0.259 1.259 20 H -0.268 1.268 21 H -0.265 1.265 22 C -0.202 4.202 23 C -0.125 4.125 24 C -0.113 4.113 25 H 0.062 0.938 26 H 0.029 0.971 27 H 0.077 0.923 28 H 0.349 0.651 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.114 0.886 34 H 0.108 0.892 35 H 0.285 0.715 36 H 0.110 0.890 37 H 0.120 0.880 38 H 0.080 0.920 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.251 -5.097 -6.164 15.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.332 5.332 3 C -0.017 4.017 4 H 0.079 0.921 5 C -0.141 4.141 6 C -0.183 4.183 7 C 0.023 3.977 8 H 0.081 0.919 9 O -0.243 6.243 10 C -0.038 4.038 11 C -0.195 4.195 12 C -0.171 4.171 13 C 0.050 3.950 14 C -0.528 4.528 15 H 0.093 0.907 16 C -0.183 4.183 17 N -0.465 5.465 18 Si 0.805 3.195 19 H -0.182 1.182 20 H -0.193 1.193 21 H -0.190 1.190 22 C -0.222 4.222 23 C -0.144 4.144 24 C -0.151 4.151 25 H 0.081 0.919 26 H 0.047 0.953 27 H 0.096 0.904 28 H 0.168 0.832 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.132 0.868 34 H 0.126 0.874 35 H 0.096 0.904 36 H 0.128 0.872 37 H 0.138 0.862 38 H 0.099 0.901 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -13.370 -5.080 -5.450 15.306 hybrid contribution 0.566 0.299 -0.017 0.640 sum -12.805 -4.781 -5.468 14.721 Atomic orbital electron populations 1.22271 0.86768 1.02593 1.00616 1.60553 1.08873 1.13128 1.50612 1.22037 0.93905 0.89860 0.95935 0.92083 1.22299 0.96181 0.98845 0.96824 1.22972 0.96409 0.99620 0.99276 1.23211 0.87264 0.92014 0.95246 0.91867 1.85840 1.24355 1.66276 1.47815 1.18702 0.87417 1.05436 0.92222 1.20823 0.99095 1.04669 0.94889 1.20992 0.94273 1.01569 1.00227 1.17966 0.94019 0.90674 0.92345 1.19744 0.94844 1.46154 0.92083 0.90683 1.26731 1.01208 0.91454 0.98883 1.69886 1.28719 1.37457 1.10462 0.85123 0.77636 0.78776 0.77918 1.18208 1.19266 1.19023 1.20828 0.97899 1.05942 0.97520 1.19908 0.92215 1.02251 1.00029 1.22320 0.93190 1.02076 0.97480 0.91929 0.95279 0.90393 0.83177 0.90353 0.90811 0.92510 0.91012 0.86812 0.87390 0.90443 0.87184 0.86171 0.90140 0.89613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.53 127.69 1.34 1.72 16 2 N -0.70 -12.55 6.62 -510.83 -3.38 -15.93 16 3 C 0.09 1.88 3.25 45.64 0.15 2.03 16 4 H 0.06 1.14 7.81 -2.39 -0.02 1.12 16 5 C -0.10 -2.37 6.49 31.67 0.21 -2.16 16 6 C -0.14 -4.28 6.32 31.89 0.20 -4.07 16 7 C 0.08 2.56 2.68 31.67 0.08 2.65 16 8 H 0.06 2.19 6.33 -2.39 -0.02 2.17 16 9 O -0.33 -13.12 9.84 -89.87 -0.88 -14.00 16 10 C 0.01 0.28 6.68 22.79 0.15 0.44 16 11 C -0.18 -8.50 8.70 22.11 0.19 -8.31 16 12 C -0.15 -8.20 8.63 22.48 0.19 -8.00 16 13 C 0.05 2.89 5.57 -21.27 -0.12 2.77 16 14 C -0.50 -27.46 9.05 23.40 0.21 -27.25 16 15 H 0.08 3.98 7.88 -2.91 -0.02 3.96 16 16 C 0.03 1.54 5.22 85.24 0.45 1.98 16 17 N -0.84 -44.90 10.80 21.82 0.24 -44.66 16 18 Si 0.98 39.15 29.58 68.60 2.03 41.18 16 19 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 20 H -0.27 -10.22 7.11 99.48 0.71 -9.52 16 21 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 22 C -0.20 -10.22 9.75 22.49 0.22 -10.01 16 23 C -0.13 -5.86 9.92 22.11 0.22 -5.64 16 24 C -0.11 -2.72 6.24 31.32 0.20 -2.52 16 25 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.03 0.36 8.07 -2.39 -0.02 0.34 16 27 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.35 5.38 8.09 -89.70 -0.73 4.66 16 29 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.07 1.79 8.05 -2.38 -0.02 1.77 16 31 H 0.06 1.86 7.45 -2.38 -0.02 1.84 16 32 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.11 4.97 5.38 -2.91 -0.02 4.95 16 34 H 0.11 6.11 6.11 -2.91 -0.02 6.10 16 35 H 0.29 13.82 8.30 -92.71 -0.77 13.05 16 36 H 0.11 5.15 8.06 -2.91 -0.02 5.13 16 37 H 0.12 4.93 8.06 -2.91 -0.02 4.90 16 38 H 0.08 1.92 8.07 -2.39 -0.02 1.90 16 39 H 0.09 1.88 7.47 -2.39 -0.02 1.86 16 Total: -1.00 -60.88 314.88 2.01 -58.87 By element: Atomic # 1 Polarization: 30.60 SS G_CDS: 0.32 Total: 30.92 kcal Atomic # 6 Polarization: -60.07 SS G_CDS: 3.70 Total: -56.37 kcal Atomic # 7 Polarization: -57.44 SS G_CDS: -3.15 Total: -60.59 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: -0.88 Total: -14.00 kcal Atomic # 14 Polarization: 39.15 SS G_CDS: 2.03 Total: 41.18 kcal Total: -60.88 2.01 -58.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403401092.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.824 kcal (2) G-P(sol) polarization free energy of solvation -60.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds