Wall clock time and date at job start Mon Mar 30 2020 06:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46896 * 111.00145 * 2 1 4 4 H 1.09002 * 110.01805 * 34.92862 * 3 2 1 5 5 C 1.54270 * 110.03005 * 273.54026 * 3 2 1 6 6 C 1.54888 * 104.19899 * 217.05750 * 5 3 2 7 7 C 1.54892 * 102.74609 * 37.94150 * 6 5 3 8 8 H 1.08998 * 110.48742 * 80.86793 * 7 6 5 9 9 O 1.42900 * 110.48608 * 203.37876 * 7 6 5 10 10 C 1.35667 * 117.00322 * 276.43881 * 9 7 6 11 11 C 1.39314 * 119.81726 * 4.74342 * 10 9 7 12 12 C 1.36442 * 120.18686 * 179.76084 * 11 10 9 13 13 C 1.40833 * 119.80788 * 0.51887 * 12 11 10 14 14 C 1.41214 * 120.17817 * 179.76234 * 13 12 11 15 15 H 1.07999 * 119.99892 * 206.64635 * 14 13 12 16 16 C 1.39891 * 119.99775 * 26.64292 * 14 13 12 17 17 N 1.30882 * 120.00003 * 12.74654 * 16 14 13 18 18 Si 1.86803 * 119.99939 * 192.74460 * 16 14 13 19 19 H 1.48505 * 109.47102 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47309 * 120.00178 * 18 16 14 21 21 H 1.48499 * 109.47121 * 240.00310 * 18 16 14 22 22 C 1.40828 * 119.64415 * 359.73672 * 13 12 11 23 23 C 1.36445 * 119.81163 * 0.02562 * 22 13 12 24 24 C 1.53874 * 110.07664 * 156.35193 * 3 2 1 25 25 H 1.09005 * 109.46715 * 60.00544 * 1 2 3 26 26 H 1.08999 * 109.47875 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47806 * 300.00893 * 1 2 3 28 28 H 1.00906 * 110.99536 * 123.95141 * 2 1 3 29 29 H 1.09002 * 110.48298 * 98.37713 * 5 3 2 30 30 H 1.08999 * 110.60002 * 335.79694 * 5 3 2 31 31 H 1.09000 * 110.75273 * 279.63275 * 6 5 3 32 32 H 1.08996 * 110.75614 * 156.25558 * 6 5 3 33 33 H 1.07999 * 119.90554 * 0.02562 * 11 10 9 34 34 H 1.07993 * 120.09324 * 180.25448 * 12 11 10 35 35 H 0.97004 * 119.99242 * 179.97438 * 17 16 14 36 36 H 1.07998 * 120.09707 * 179.97438 * 22 13 12 37 37 H 1.07996 * 119.90742 * 180.02562 * 23 22 13 38 38 H 1.09009 * 110.02898 * 0.02562 * 24 3 2 39 39 H 1.08995 * 110.03375 * 238.59104 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3453 2.0207 0.5864 5 6 2.1013 1.8967 -1.4466 6 6 3.3976 2.7444 -1.4491 7 6 4.3428 1.9260 -0.5348 8 1 4.7919 1.1025 -1.0900 9 8 5.3573 2.7676 0.0170 10 6 6.4497 3.0015 -0.7528 11 6 6.4969 2.5106 -2.0558 12 6 7.5897 2.7456 -2.8382 13 6 8.6764 3.4773 -2.3215 14 6 9.8134 3.7208 -3.1228 15 1 10.7767 3.8767 -2.6601 16 6 9.6919 3.7599 -4.5159 17 7 8.5069 3.8217 -5.0680 18 14 11.2211 3.7239 -5.5882 19 1 12.4285 3.6542 -4.7263 20 1 11.1760 2.5337 -6.4750 21 1 11.2747 4.9559 -6.4155 22 6 8.6229 3.9654 -1.0016 23 6 7.5206 3.7258 -0.2340 24 6 3.4207 1.3900 0.5797 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3635 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8898 28 1 1.8305 -0.5261 0.7815 29 1 1.2391 2.5174 -1.6911 30 1 2.1856 1.0685 -2.1502 31 1 3.2135 3.7329 -1.0283 32 1 3.8063 2.8221 -2.4565 33 1 5.6644 1.9461 -2.4490 34 1 7.6230 2.3679 -3.8494 35 1 8.4228 3.8492 -6.0340 36 1 9.4522 4.5271 -0.5978 37 1 7.4777 4.0998 0.7783 38 1 3.7226 0.3810 0.8610 39 1 3.4622 2.0483 1.4475 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403401096.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:36 Heat of formation + Delta-G solvation = -26.205554 kcal Electronic energy + Delta-G solvation = -19163.804191 eV Core-core repulsion = 16263.731683 eV Total energy + Delta-G solvation = -2900.072508 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.45088 -37.81458 -36.16376 -33.82090 -33.08794 -29.64734 -29.24097 -28.56802 -27.13333 -24.71777 -24.31030 -21.51812 -20.95004 -20.14453 -19.57287 -17.41748 -17.13256 -15.80157 -15.63399 -15.24084 -15.02554 -14.30480 -13.94033 -13.78013 -13.54398 -13.10253 -12.81572 -12.52127 -12.32959 -12.01179 -11.73318 -11.62456 -11.28917 -11.20004 -11.06314 -11.04554 -10.81773 -10.72129 -10.62302 -10.30476 -9.73769 -9.69301 -9.29267 -9.00914 -8.62162 -7.60210 -6.92536 -6.64890 -4.22701 2.79775 3.00940 3.11196 3.16513 3.23304 3.98977 4.03678 4.12042 4.61231 4.67563 4.73355 5.16559 5.20488 5.28504 5.42913 5.48343 5.55509 5.66521 5.70588 5.77192 5.81961 5.94314 6.03964 6.10859 6.17114 6.28974 6.38499 6.46061 6.81424 6.90226 6.94778 7.11720 7.19257 7.34117 7.47478 7.61001 7.97117 8.05253 8.21067 8.50991 8.71182 8.95420 9.04213 10.29194 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.037459 B = 0.003979 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.305892 B = 7035.674119 C = 7538.223389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.689 5.689 3 C 0.084 3.916 4 H 0.049 0.951 5 C -0.112 4.112 6 C -0.148 4.148 7 C 0.094 3.906 8 H 0.073 0.927 9 O -0.323 6.323 10 C -0.002 4.002 11 C -0.175 4.175 12 C -0.129 4.129 13 C 0.084 3.916 14 C -0.462 4.462 15 H 0.076 0.924 16 C 0.072 3.928 17 N -0.807 5.807 18 Si 0.909 3.091 19 H -0.262 1.262 20 H -0.274 1.274 21 H -0.276 1.276 22 C -0.194 4.194 23 C -0.118 4.118 24 C -0.119 4.119 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.020 0.980 28 H 0.341 0.659 29 H 0.061 0.939 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.124 0.876 35 H 0.277 0.723 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.075 0.925 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.742 -5.180 5.957 14.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.321 5.321 3 C -0.026 4.026 4 H 0.067 0.933 5 C -0.150 4.150 6 C -0.186 4.186 7 C 0.036 3.964 8 H 0.091 0.909 9 O -0.239 6.239 10 C -0.045 4.045 11 C -0.194 4.194 12 C -0.149 4.149 13 C 0.082 3.918 14 C -0.493 4.493 15 H 0.094 0.906 16 C -0.144 4.144 17 N -0.434 5.434 18 Si 0.734 3.266 19 H -0.186 1.186 20 H -0.199 1.199 21 H -0.201 1.201 22 C -0.214 4.214 23 C -0.137 4.137 24 C -0.157 4.157 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.038 0.962 28 H 0.159 0.841 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.115 0.885 34 H 0.142 0.858 35 H 0.088 0.912 36 H 0.117 0.883 37 H 0.113 0.887 38 H 0.093 0.907 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.840 -5.159 5.238 13.937 hybrid contribution 0.328 0.249 0.069 0.417 sum -11.512 -4.911 5.306 13.594 Atomic orbital electron populations 1.22220 0.88055 1.01631 1.00342 1.60593 1.07596 1.13970 1.49912 1.22159 0.94699 0.88746 0.96970 0.93343 1.22347 0.97355 0.99264 0.96010 1.23064 0.95171 0.99317 1.01025 1.22830 0.87377 0.92534 0.93633 0.90920 1.85833 1.28179 1.66175 1.43740 1.18580 0.88226 1.06657 0.91053 1.20698 0.99987 1.04907 0.93832 1.21037 0.93923 1.00010 0.99888 1.17610 0.93210 0.89771 0.91178 1.19495 0.95561 1.43533 0.90716 0.90616 1.25859 0.97080 0.92547 0.98867 1.69823 1.23910 1.37281 1.12369 0.86258 0.82198 0.78413 0.79776 1.18560 1.19883 1.20128 1.20614 0.97836 1.06331 0.96596 1.19614 0.93029 1.02331 0.98742 1.22298 0.93126 1.01644 0.98627 0.91688 0.91591 0.96167 0.84077 0.92056 0.90299 0.90779 0.90577 0.88457 0.85825 0.91190 0.88311 0.88662 0.90656 0.90423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.52 60.06 0.63 0.86 16 2 N -0.69 -7.10 6.61 -112.82 -0.75 -7.85 16 3 C 0.08 0.97 3.24 -66.60 -0.22 0.75 16 4 H 0.05 0.54 7.83 -51.93 -0.41 0.13 16 5 C -0.11 -1.39 6.43 -25.07 -0.16 -1.56 16 6 C -0.15 -2.26 6.16 -24.74 -0.15 -2.42 16 7 C 0.09 1.56 2.71 -25.07 -0.07 1.49 16 8 H 0.07 1.27 6.57 -51.93 -0.34 0.93 16 9 O -0.32 -6.64 9.85 -18.70 -0.18 -6.83 16 10 C 0.00 -0.05 6.64 -38.78 -0.26 -0.30 16 11 C -0.18 -4.16 8.54 -39.83 -0.34 -4.50 16 12 C -0.13 -3.39 8.62 -39.25 -0.34 -3.73 16 13 C 0.08 2.28 5.57 -106.81 -0.59 1.69 16 14 C -0.46 -12.42 9.05 -37.83 -0.34 -12.76 16 15 H 0.08 1.96 7.88 -52.49 -0.41 1.54 16 16 C 0.07 1.83 5.23 -17.34 -0.09 1.74 16 17 N -0.81 -21.15 10.80 55.54 0.60 -20.55 16 18 Si 0.91 18.99 29.58 -169.99 -5.03 13.96 16 19 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 20 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 21 H -0.28 -5.69 7.11 56.52 0.40 -5.28 16 22 C -0.19 -4.84 9.74 -39.25 -0.38 -5.23 16 23 C -0.12 -2.79 9.92 -39.83 -0.40 -3.18 16 24 C -0.12 -1.56 6.24 -25.61 -0.16 -1.72 16 25 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.02 0.16 8.07 -51.93 -0.42 -0.26 16 28 H 0.34 3.08 8.13 -39.29 -0.32 2.76 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 1.02 8.06 -51.93 -0.42 0.61 16 31 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.08 1.26 7.08 -51.93 -0.37 0.89 16 33 H 0.10 2.08 5.18 -52.49 -0.27 1.81 16 34 H 0.12 3.35 6.12 -52.49 -0.32 3.03 16 35 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 36 H 0.10 2.29 8.06 -52.49 -0.42 1.87 16 37 H 0.10 2.02 8.06 -52.49 -0.42 1.60 16 38 H 0.07 0.90 7.50 -51.92 -0.39 0.52 16 39 H 0.08 1.02 8.07 -51.93 -0.42 0.60 16 LS Contribution 314.19 15.07 4.73 4.73 Total: -1.00 -28.15 314.19 -9.25 -37.39 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -5.76 Total: 8.00 kcal Atomic # 6 Polarization: -26.00 SS G_CDS: -2.87 Total: -28.87 kcal Atomic # 7 Polarization: -28.25 SS G_CDS: -0.15 Total: -28.39 kcal Atomic # 8 Polarization: -6.64 SS G_CDS: -0.18 Total: -6.83 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.03 Total: 13.96 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.15 -9.25 -37.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403401096.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.189 kcal (2) G-P(sol) polarization free energy of solvation -28.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds