Wall clock time and date at job start Mon Mar 30 2020 06:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46896 * 111.00145 * 2 1 4 4 H 1.09002 * 110.01805 * 34.92862 * 3 2 1 5 5 C 1.54270 * 110.03005 * 273.54026 * 3 2 1 6 6 C 1.54888 * 104.19899 * 217.05750 * 5 3 2 7 7 C 1.54892 * 102.74609 * 37.94150 * 6 5 3 8 8 H 1.08998 * 110.48742 * 80.86793 * 7 6 5 9 9 O 1.42900 * 110.48608 * 203.37876 * 7 6 5 10 10 C 1.35667 * 117.00322 * 276.43881 * 9 7 6 11 11 C 1.39314 * 119.81726 * 4.74342 * 10 9 7 12 12 C 1.36442 * 120.18686 * 179.76084 * 11 10 9 13 13 C 1.40833 * 119.80788 * 0.51887 * 12 11 10 14 14 C 1.41214 * 120.17817 * 179.76234 * 13 12 11 15 15 H 1.07999 * 119.99892 * 206.64635 * 14 13 12 16 16 C 1.39891 * 119.99775 * 26.64292 * 14 13 12 17 17 N 1.30882 * 120.00003 * 12.74654 * 16 14 13 18 18 Si 1.86803 * 119.99939 * 192.74460 * 16 14 13 19 19 H 1.48505 * 109.47102 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47309 * 120.00178 * 18 16 14 21 21 H 1.48499 * 109.47121 * 240.00310 * 18 16 14 22 22 C 1.40828 * 119.64415 * 359.73672 * 13 12 11 23 23 C 1.36445 * 119.81163 * 0.02562 * 22 13 12 24 24 C 1.53874 * 110.07664 * 156.35193 * 3 2 1 25 25 H 1.09005 * 109.46715 * 60.00544 * 1 2 3 26 26 H 1.08999 * 109.47875 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47806 * 300.00893 * 1 2 3 28 28 H 1.00906 * 110.99536 * 123.95141 * 2 1 3 29 29 H 1.09002 * 110.48298 * 98.37713 * 5 3 2 30 30 H 1.08999 * 110.60002 * 335.79694 * 5 3 2 31 31 H 1.09000 * 110.75273 * 279.63275 * 6 5 3 32 32 H 1.08996 * 110.75614 * 156.25558 * 6 5 3 33 33 H 1.07999 * 119.90554 * 0.02562 * 11 10 9 34 34 H 1.07993 * 120.09324 * 180.25448 * 12 11 10 35 35 H 0.97004 * 119.99242 * 179.97438 * 17 16 14 36 36 H 1.07998 * 120.09707 * 179.97438 * 22 13 12 37 37 H 1.07996 * 119.90742 * 180.02562 * 23 22 13 38 38 H 1.09009 * 110.02898 * 0.02562 * 24 3 2 39 39 H 1.08995 * 110.03375 * 238.59104 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3453 2.0207 0.5864 5 6 2.1013 1.8967 -1.4466 6 6 3.3976 2.7444 -1.4491 7 6 4.3428 1.9260 -0.5348 8 1 4.7919 1.1025 -1.0900 9 8 5.3573 2.7676 0.0170 10 6 6.4497 3.0015 -0.7528 11 6 6.4969 2.5106 -2.0558 12 6 7.5897 2.7456 -2.8382 13 6 8.6764 3.4773 -2.3215 14 6 9.8134 3.7208 -3.1228 15 1 10.7767 3.8767 -2.6601 16 6 9.6919 3.7599 -4.5159 17 7 8.5069 3.8217 -5.0680 18 14 11.2211 3.7239 -5.5882 19 1 12.4285 3.6542 -4.7263 20 1 11.1760 2.5337 -6.4750 21 1 11.2747 4.9559 -6.4155 22 6 8.6229 3.9654 -1.0016 23 6 7.5206 3.7258 -0.2340 24 6 3.4207 1.3900 0.5797 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3635 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8898 28 1 1.8305 -0.5261 0.7815 29 1 1.2391 2.5174 -1.6911 30 1 2.1856 1.0685 -2.1502 31 1 3.2135 3.7329 -1.0283 32 1 3.8063 2.8221 -2.4565 33 1 5.6644 1.9461 -2.4490 34 1 7.6230 2.3679 -3.8494 35 1 8.4228 3.8492 -6.0340 36 1 9.4522 4.5271 -0.5978 37 1 7.4777 4.0998 0.7783 38 1 3.7226 0.3810 0.8610 39 1 3.4622 2.0483 1.4475 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403401096.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:35 Heat of formation + Delta-G solvation = -42.282474 kcal Electronic energy + Delta-G solvation = -19164.501338 eV Core-core repulsion = 16263.731683 eV Total energy + Delta-G solvation = -2900.769655 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.94069 -39.25055 -37.74895 -35.30180 -34.54573 -31.55011 -31.05248 -29.73096 -28.31049 -26.59732 -25.14538 -23.20758 -22.77349 -21.39732 -20.84040 -19.28669 -18.83616 -17.26793 -16.75314 -16.49066 -16.19682 -15.95416 -15.69601 -15.05608 -14.87940 -14.46515 -14.25892 -14.14583 -13.72762 -13.41651 -13.24810 -13.11799 -12.81856 -12.72486 -12.44296 -12.33109 -12.15049 -12.07754 -11.76556 -11.72102 -11.58131 -11.32907 -11.13844 -10.86046 -9.54602 -9.39872 -8.84938 -8.55061 -6.23157 0.94515 1.06162 1.40127 1.51308 1.55017 2.24117 2.60053 2.75909 3.26485 3.54585 3.58914 3.72309 4.10659 4.24836 4.31423 4.37278 4.42463 4.43673 4.54381 4.59169 4.61532 4.76778 4.86322 4.87955 4.98777 5.02577 5.07834 5.11764 5.17020 5.18885 5.29385 5.40087 5.56525 5.69078 6.00760 6.08400 6.09872 6.25739 6.47515 6.58968 6.82814 6.97478 7.12539 8.41006 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.037459 B = 0.003979 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.305892 B = 7035.674119 C = 7538.223389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.699 5.699 3 C 0.093 3.907 4 H 0.060 0.940 5 C -0.103 4.103 6 C -0.147 4.147 7 C 0.081 3.919 8 H 0.062 0.938 9 O -0.327 6.327 10 C 0.007 3.993 11 C -0.176 4.176 12 C -0.151 4.151 13 C 0.052 3.948 14 C -0.498 4.498 15 H 0.075 0.925 16 C 0.030 3.970 17 N -0.838 5.838 18 Si 0.984 3.016 19 H -0.259 1.259 20 H -0.266 1.266 21 H -0.268 1.268 22 C -0.202 4.202 23 C -0.126 4.126 24 C -0.111 4.111 25 H 0.061 0.939 26 H 0.078 0.922 27 H 0.029 0.971 28 H 0.349 0.651 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.114 0.886 34 H 0.108 0.892 35 H 0.285 0.715 36 H 0.110 0.890 37 H 0.120 0.880 38 H 0.087 0.913 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.784 -5.676 6.589 15.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.331 5.331 3 C -0.017 4.017 4 H 0.078 0.922 5 C -0.142 4.142 6 C -0.185 4.185 7 C 0.024 3.976 8 H 0.080 0.920 9 O -0.243 6.243 10 C -0.037 4.037 11 C -0.195 4.195 12 C -0.170 4.170 13 C 0.050 3.950 14 C -0.528 4.528 15 H 0.093 0.907 16 C -0.183 4.183 17 N -0.466 5.466 18 Si 0.805 3.195 19 H -0.182 1.182 20 H -0.190 1.190 21 H -0.193 1.193 22 C -0.222 4.222 23 C -0.144 4.144 24 C -0.149 4.149 25 H 0.080 0.920 26 H 0.096 0.904 27 H 0.047 0.953 28 H 0.169 0.831 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.132 0.868 34 H 0.126 0.874 35 H 0.095 0.905 36 H 0.128 0.872 37 H 0.138 0.862 38 H 0.105 0.895 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.907 -5.665 5.892 15.278 hybrid contribution 0.510 0.374 -0.038 0.634 sum -12.397 -5.291 5.854 14.696 Atomic orbital electron populations 1.22267 0.86779 1.02599 1.00609 1.60552 1.08861 1.13115 1.50599 1.22031 0.93859 0.89848 0.95982 0.92161 1.22294 0.96203 0.98796 0.96874 1.23007 0.96400 0.99555 0.99509 1.23187 0.86983 0.91905 0.95497 0.91986 1.85835 1.27984 1.66861 1.43640 1.18698 0.88906 1.05274 0.90846 1.20843 0.99750 1.04799 0.94063 1.20990 0.95085 1.01241 0.99721 1.17961 0.93900 0.90766 0.92382 1.19743 0.95612 1.45492 0.91988 0.90692 1.26728 1.00369 0.91494 0.99697 1.69886 1.25973 1.37597 1.13123 0.85124 0.77894 0.78764 0.77673 1.18214 1.19032 1.19265 1.20826 0.98820 1.06333 0.96184 1.19909 0.92652 1.02087 0.99779 1.22283 0.93151 1.02070 0.97347 0.91966 0.90365 0.95284 0.83144 0.90440 0.90789 0.91133 0.92494 0.86779 0.87415 0.90462 0.87183 0.86162 0.89481 0.90098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.52 127.69 1.34 1.72 16 2 N -0.70 -12.48 6.61 -510.85 -3.38 -15.85 16 3 C 0.09 1.89 3.24 45.64 0.15 2.04 16 4 H 0.06 1.13 7.83 -2.39 -0.02 1.11 16 5 C -0.10 -2.39 6.43 31.67 0.20 -2.19 16 6 C -0.15 -4.38 6.16 31.89 0.20 -4.19 16 7 C 0.08 2.61 2.71 31.67 0.09 2.70 16 8 H 0.06 2.14 6.57 -2.39 -0.02 2.12 16 9 O -0.33 -13.13 9.85 -89.83 -0.88 -14.01 16 10 C 0.01 0.31 6.64 22.79 0.15 0.46 16 11 C -0.18 -8.48 8.54 22.11 0.19 -8.29 16 12 C -0.15 -8.19 8.62 22.49 0.19 -7.99 16 13 C 0.05 2.89 5.57 -21.28 -0.12 2.77 16 14 C -0.50 -27.48 9.05 23.40 0.21 -27.26 16 15 H 0.07 3.98 7.88 -2.91 -0.02 3.96 16 16 C 0.03 1.53 5.23 85.23 0.45 1.97 16 17 N -0.84 -44.96 10.80 21.82 0.24 -44.72 16 18 Si 0.98 39.19 29.58 68.60 2.03 41.22 16 19 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 20 H -0.27 -10.14 7.11 99.48 0.71 -9.44 16 21 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16 22 C -0.20 -10.21 9.74 22.48 0.22 -9.99 16 23 C -0.13 -5.87 9.92 22.11 0.22 -5.65 16 24 C -0.11 -2.65 6.24 31.32 0.20 -2.46 16 25 H 0.06 0.91 8.10 -2.38 -0.02 0.89 16 26 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.03 0.36 8.07 -2.39 -0.02 0.34 16 28 H 0.35 5.30 8.13 -89.69 -0.73 4.58 16 29 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.07 1.80 8.06 -2.39 -0.02 1.78 16 31 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.06 1.90 7.08 -2.39 -0.02 1.88 16 33 H 0.11 4.98 5.18 -2.91 -0.02 4.96 16 34 H 0.11 6.10 6.12 -2.91 -0.02 6.09 16 35 H 0.28 13.82 8.30 -92.71 -0.77 13.05 16 36 H 0.11 5.15 8.06 -2.91 -0.02 5.13 16 37 H 0.12 4.93 8.06 -2.91 -0.02 4.91 16 38 H 0.09 1.88 7.50 -2.38 -0.02 1.86 16 39 H 0.08 1.91 8.07 -2.39 -0.02 1.89 16 Total: -1.00 -60.93 314.19 2.00 -58.93 By element: Atomic # 1 Polarization: 30.50 SS G_CDS: 0.31 Total: 30.81 kcal Atomic # 6 Polarization: -60.05 SS G_CDS: 3.68 Total: -56.37 kcal Atomic # 7 Polarization: -57.43 SS G_CDS: -3.14 Total: -60.58 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: -0.88 Total: -14.01 kcal Atomic # 14 Polarization: 39.19 SS G_CDS: 2.03 Total: 41.22 kcal Total: -60.93 2.00 -58.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403401096.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.645 kcal (2) G-P(sol) polarization free energy of solvation -60.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds