Wall clock time and date at job start Mon Mar 30 2020 06:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46897 * 111.00028 * 2 1 4 4 H 1.09003 * 109.46894 * 326.68527 * 3 2 1 5 5 C 1.52999 * 109.47241 * 86.68152 * 3 2 1 6 6 O 1.42893 * 109.47219 * 65.00279 * 5 3 2 7 7 C 1.35673 * 117.00056 * 180.02562 * 6 5 3 8 8 C 1.39311 * 119.82142 * 359.72289 * 7 6 5 9 9 C 1.36435 * 120.19040 * 179.71520 * 8 7 6 10 10 C 1.40841 * 119.80780 * 0.55964 * 9 8 7 11 11 C 1.41210 * 120.17703 * 179.69931 * 10 9 8 12 12 H 1.08009 * 119.99918 * 207.09202 * 11 10 9 13 13 C 1.39890 * 120.00451 * 27.09330 * 11 10 9 14 14 N 1.30880 * 119.99946 * 13.10140 * 13 11 10 15 15 Si 1.86797 * 120.00129 * 193.10459 * 13 11 10 16 16 H 1.48505 * 109.47400 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47429 * 119.99965 * 15 13 11 18 18 H 1.48497 * 109.47210 * 239.99838 * 15 13 11 19 19 C 1.40832 * 119.64057 * 359.72066 * 10 9 8 20 20 C 1.36440 * 119.81288 * 359.97438 * 19 10 9 21 21 C 1.53005 * 109.47531 * 206.68322 * 3 2 1 22 22 C 1.53004 * 117.49767 * 132.55289 * 21 3 2 23 23 C 1.52994 * 117.49551 * 63.89452 * 21 3 2 24 24 H 1.08999 * 109.47524 * 304.36772 * 1 2 3 25 25 H 1.08998 * 109.47312 * 64.37025 * 1 2 3 26 26 H 1.09006 * 109.46921 * 184.36997 * 1 2 3 27 27 H 1.00904 * 111.00250 * 123.94896 * 2 1 3 28 28 H 1.09002 * 109.47355 * 304.99845 * 5 3 2 29 29 H 1.09006 * 109.47184 * 185.00326 * 5 3 2 30 30 H 1.08006 * 119.90066 * 359.97438 * 8 7 6 31 31 H 1.08002 * 120.10062 * 180.28416 * 9 8 7 32 32 H 0.96994 * 119.99990 * 179.97438 * 14 13 11 33 33 H 1.08002 * 120.09347 * 179.97438 * 19 10 9 34 34 H 1.08000 * 119.90901 * 179.97438 * 20 19 10 35 35 H 1.08998 * 115.54523 * 278.22687 * 21 3 2 36 36 H 1.08998 * 117.49704 * 0.02562 * 22 21 3 37 37 H 1.09000 * 117.49229 * 145.02117 * 22 21 3 38 38 H 1.09004 * 117.49698 * 214.97936 * 23 21 3 39 39 H 1.08999 * 117.50508 * 359.97438 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3238 2.0183 -0.5645 5 6 2.1002 1.8775 1.4401 6 8 3.0682 1.1010 2.1485 7 6 3.2834 1.4224 3.4490 8 6 2.5762 2.4731 4.0292 9 6 2.7825 2.7989 5.3379 10 6 3.7221 2.0772 6.0994 11 6 3.9463 2.4119 7.4528 12 1 4.9030 2.2042 7.9091 13 6 2.9294 3.0124 8.2026 14 7 1.7035 3.0328 7.7446 15 14 3.3212 3.7852 9.8575 16 1 4.7696 3.6299 10.1460 17 1 2.9746 5.2288 9.8243 18 1 2.5306 3.1107 10.9183 19 6 4.4370 1.0202 5.5036 20 6 4.2143 0.7032 4.1953 21 6 3.3815 1.3857 -0.6478 22 6 3.6572 2.4591 -1.7027 23 6 3.4748 0.9991 -2.1251 24 1 -0.3634 0.5801 0.8482 25 1 -0.3634 0.4445 -0.9265 26 1 -0.3633 -1.0247 0.0783 27 1 1.8306 -0.5261 0.7814 28 1 1.1307 1.7841 1.9295 29 1 2.4059 2.9238 1.4362 30 1 1.8596 3.0286 3.4423 31 1 2.2301 3.6108 5.7875 32 1 0.9984 3.4488 8.2647 33 1 5.1596 0.4621 6.0806 34 1 4.7621 -0.1069 3.7368 35 1 4.2069 1.0946 0.0018 36 1 2.8512 3.1552 -1.9350 37 1 4.6642 2.8738 -1.7474 38 1 4.3619 0.4540 -2.4476 39 1 2.5489 0.7341 -2.6355 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403426644.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:47 Heat of formation + Delta-G solvation = 1.745440 kcal Electronic energy + Delta-G solvation = -19114.585340 eV Core-core repulsion = 16215.724879 eV Total energy + Delta-G solvation = -2898.860462 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.24600 -37.84308 -36.21537 -34.83904 -33.29547 -29.87610 -29.59896 -28.59154 -25.25934 -24.66337 -22.98088 -22.18835 -21.06240 -20.82867 -19.69666 -17.37354 -16.96166 -15.87303 -15.72960 -15.27316 -15.14822 -14.59256 -13.97902 -13.68357 -13.58792 -13.11999 -12.98627 -12.41953 -12.25066 -11.93541 -11.79817 -11.66078 -11.46291 -11.34599 -11.16259 -10.99289 -10.86871 -10.60019 -10.14487 -9.98929 -9.87060 -9.77311 -9.38905 -9.06934 -8.35040 -7.67224 -6.98969 -6.70378 -4.27941 2.74971 2.94915 3.08204 3.13566 3.18894 3.72712 3.95339 4.12853 4.48882 4.62690 4.69090 4.97599 5.15376 5.24650 5.37164 5.46456 5.54208 5.61051 5.65236 5.70534 5.73303 5.84953 5.88975 6.02684 6.10067 6.19843 6.26135 6.45782 6.68865 6.87496 7.03221 7.06550 7.27651 7.39847 7.45761 7.54890 7.89687 7.99645 8.14255 8.42932 8.64279 8.90228 8.97810 10.24423 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.035852 B = 0.003969 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.801158 B = 7052.143487 C = 7278.256353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.685 5.685 3 C 0.123 3.877 4 H 0.085 0.915 5 C 0.041 3.959 6 O -0.322 6.322 7 C -0.005 4.005 8 C -0.176 4.176 9 C -0.129 4.129 10 C 0.086 3.914 11 C -0.463 4.463 12 H 0.077 0.923 13 C 0.072 3.928 14 N -0.807 5.807 15 Si 0.909 3.091 16 H -0.261 1.261 17 H -0.273 1.273 18 H -0.275 1.275 19 C -0.193 4.193 20 C -0.115 4.115 21 C -0.132 4.132 22 C -0.186 4.186 23 C -0.163 4.163 24 H 0.022 0.978 25 H 0.060 0.940 26 H 0.066 0.934 27 H 0.354 0.646 28 H 0.049 0.951 29 H 0.055 0.945 30 H 0.092 0.908 31 H 0.123 0.877 32 H 0.278 0.722 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.112 0.888 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.533 -0.972 -12.492 12.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.315 5.315 3 C 0.013 3.987 4 H 0.103 0.897 5 C -0.036 4.036 6 O -0.238 6.238 7 C -0.048 4.048 8 C -0.195 4.195 9 C -0.149 4.149 10 C 0.084 3.916 11 C -0.493 4.493 12 H 0.095 0.905 13 C -0.143 4.143 14 N -0.434 5.434 15 Si 0.734 3.266 16 H -0.185 1.185 17 H -0.199 1.199 18 H -0.201 1.201 19 C -0.213 4.213 20 C -0.134 4.134 21 C -0.151 4.151 22 C -0.224 4.224 23 C -0.200 4.200 24 H 0.041 0.959 25 H 0.079 0.921 26 H 0.085 0.915 27 H 0.174 0.826 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.110 0.890 31 H 0.140 0.860 32 H 0.088 0.912 33 H 0.118 0.882 34 H 0.115 0.885 35 H 0.130 0.870 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.106 0.894 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.642 -1.132 -13.199 13.349 hybrid contribution -0.420 0.895 1.855 2.102 sum -2.062 -0.237 -11.344 11.533 Atomic orbital electron populations 1.22234 0.88350 1.01676 1.00193 1.60446 1.06994 1.13230 1.50865 1.21255 0.94755 0.90096 0.92633 0.89721 1.23086 0.92115 0.95873 0.92576 1.85754 1.58266 1.57350 1.22467 1.18578 1.02785 1.00712 0.82727 1.20621 1.02277 0.99459 0.97134 1.20996 1.01407 1.00959 0.91509 1.17612 0.91115 0.89685 0.93232 1.19506 0.99406 1.35095 0.95325 0.90527 1.25862 0.94344 0.94076 1.00024 1.69818 1.00658 1.34706 1.38218 0.86252 0.79850 0.79225 0.81304 1.18494 1.19865 1.20081 1.20637 1.05913 1.00426 0.94321 1.19608 0.99204 1.00415 0.94166 1.22124 0.98133 1.03290 0.91531 1.23005 1.02479 0.92251 1.04628 1.22745 1.02711 0.96821 0.97764 0.95898 0.92125 0.91524 0.82636 0.93315 0.92643 0.88971 0.85963 0.91151 0.88210 0.88505 0.86963 0.89287 0.88997 0.89351 0.88913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.48 60.06 0.63 0.91 16 2 N -0.68 -8.91 6.55 -114.01 -0.75 -9.65 16 3 C 0.12 1.62 2.58 -67.71 -0.17 1.44 16 4 H 0.08 1.01 7.62 -51.93 -0.40 0.61 16 5 C 0.04 0.66 4.40 37.16 0.16 0.83 16 6 O -0.32 -6.27 8.53 -18.72 -0.16 -6.42 16 7 C 0.00 -0.11 6.71 -38.78 -0.26 -0.37 16 8 C -0.18 -4.14 8.96 -39.83 -0.36 -4.49 16 9 C -0.13 -3.37 8.62 -39.25 -0.34 -3.70 16 10 C 0.09 2.29 5.56 -106.80 -0.59 1.70 16 11 C -0.46 -12.32 9.05 -37.84 -0.34 -12.67 16 12 H 0.08 1.96 7.88 -52.48 -0.41 1.55 16 13 C 0.07 1.83 5.22 -17.34 -0.09 1.74 16 14 N -0.81 -21.01 10.85 55.54 0.60 -20.41 16 15 Si 0.91 18.81 29.58 -169.99 -5.03 13.78 16 16 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 17 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 18 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 19 C -0.19 -4.75 9.74 -39.25 -0.38 -5.14 16 20 C -0.12 -2.65 9.92 -39.83 -0.40 -3.05 16 21 C -0.13 -1.73 5.18 -90.62 -0.47 -2.20 16 22 C -0.19 -2.06 10.18 -26.69 -0.27 -2.33 16 23 C -0.16 -1.83 10.19 -26.70 -0.27 -2.10 16 24 H 0.02 0.27 7.41 -51.93 -0.38 -0.12 16 25 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.35 5.10 8.00 -39.29 -0.31 4.79 16 28 H 0.05 0.80 6.94 -51.93 -0.36 0.44 16 29 H 0.06 0.89 7.64 -51.93 -0.40 0.50 16 30 H 0.09 1.95 6.27 -52.48 -0.33 1.63 16 31 H 0.12 3.29 6.17 -52.49 -0.32 2.96 16 32 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 33 H 0.10 2.28 8.06 -52.49 -0.42 1.86 16 34 H 0.10 2.00 8.06 -52.49 -0.42 1.58 16 35 H 0.11 1.70 7.43 -51.93 -0.39 1.31 16 36 H 0.09 0.90 8.07 -51.93 -0.42 0.48 16 37 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 322.16 15.07 4.85 4.85 Total: -1.00 -27.24 322.16 -9.45 -36.69 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -5.82 Total: 10.59 kcal Atomic # 6 Polarization: -26.27 SS G_CDS: -3.16 Total: -29.43 kcal Atomic # 7 Polarization: -29.92 SS G_CDS: -0.14 Total: -30.06 kcal Atomic # 8 Polarization: -6.27 SS G_CDS: -0.16 Total: -6.42 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.78 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -27.24 -9.45 -36.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403426644.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.436 kcal (2) G-P(sol) polarization free energy of solvation -27.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds