Wall clock time and date at job start Mon Mar 30 2020 06:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46897 * 111.00028 * 2 1 4 4 H 1.09003 * 109.46894 * 326.68527 * 3 2 1 5 5 C 1.52999 * 109.47241 * 86.68152 * 3 2 1 6 6 O 1.42893 * 109.47219 * 65.00279 * 5 3 2 7 7 C 1.35673 * 117.00056 * 180.02562 * 6 5 3 8 8 C 1.39311 * 119.82142 * 359.72289 * 7 6 5 9 9 C 1.36435 * 120.19040 * 179.71520 * 8 7 6 10 10 C 1.40841 * 119.80780 * 0.55964 * 9 8 7 11 11 C 1.41210 * 120.17703 * 179.69931 * 10 9 8 12 12 H 1.08009 * 119.99918 * 207.09202 * 11 10 9 13 13 C 1.39890 * 120.00451 * 27.09330 * 11 10 9 14 14 N 1.30880 * 119.99946 * 13.10140 * 13 11 10 15 15 Si 1.86797 * 120.00129 * 193.10459 * 13 11 10 16 16 H 1.48505 * 109.47400 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47429 * 119.99965 * 15 13 11 18 18 H 1.48497 * 109.47210 * 239.99838 * 15 13 11 19 19 C 1.40832 * 119.64057 * 359.72066 * 10 9 8 20 20 C 1.36440 * 119.81288 * 359.97438 * 19 10 9 21 21 C 1.53005 * 109.47531 * 206.68322 * 3 2 1 22 22 C 1.53004 * 117.49767 * 132.55289 * 21 3 2 23 23 C 1.52994 * 117.49551 * 63.89452 * 21 3 2 24 24 H 1.08999 * 109.47524 * 304.36772 * 1 2 3 25 25 H 1.08998 * 109.47312 * 64.37025 * 1 2 3 26 26 H 1.09006 * 109.46921 * 184.36997 * 1 2 3 27 27 H 1.00904 * 111.00250 * 123.94896 * 2 1 3 28 28 H 1.09002 * 109.47355 * 304.99845 * 5 3 2 29 29 H 1.09006 * 109.47184 * 185.00326 * 5 3 2 30 30 H 1.08006 * 119.90066 * 359.97438 * 8 7 6 31 31 H 1.08002 * 120.10062 * 180.28416 * 9 8 7 32 32 H 0.96994 * 119.99990 * 179.97438 * 14 13 11 33 33 H 1.08002 * 120.09347 * 179.97438 * 19 10 9 34 34 H 1.08000 * 119.90901 * 179.97438 * 20 19 10 35 35 H 1.08998 * 115.54523 * 278.22687 * 21 3 2 36 36 H 1.08998 * 117.49704 * 0.02562 * 22 21 3 37 37 H 1.09000 * 117.49229 * 145.02117 * 22 21 3 38 38 H 1.09004 * 117.49698 * 214.97936 * 23 21 3 39 39 H 1.08999 * 117.50508 * 359.97438 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3238 2.0183 -0.5645 5 6 2.1002 1.8775 1.4401 6 8 3.0682 1.1010 2.1485 7 6 3.2834 1.4224 3.4490 8 6 2.5762 2.4731 4.0292 9 6 2.7825 2.7989 5.3379 10 6 3.7221 2.0772 6.0994 11 6 3.9463 2.4119 7.4528 12 1 4.9030 2.2042 7.9091 13 6 2.9294 3.0124 8.2026 14 7 1.7035 3.0328 7.7446 15 14 3.3212 3.7852 9.8575 16 1 4.7696 3.6299 10.1460 17 1 2.9746 5.2288 9.8243 18 1 2.5306 3.1107 10.9183 19 6 4.4370 1.0202 5.5036 20 6 4.2143 0.7032 4.1953 21 6 3.3815 1.3857 -0.6478 22 6 3.6572 2.4591 -1.7027 23 6 3.4748 0.9991 -2.1251 24 1 -0.3634 0.5801 0.8482 25 1 -0.3634 0.4445 -0.9265 26 1 -0.3633 -1.0247 0.0783 27 1 1.8306 -0.5261 0.7814 28 1 1.1307 1.7841 1.9295 29 1 2.4059 2.9238 1.4362 30 1 1.8596 3.0286 3.4423 31 1 2.2301 3.6108 5.7875 32 1 0.9984 3.4488 8.2647 33 1 5.1596 0.4621 6.0806 34 1 4.7621 -0.1069 3.7368 35 1 4.2069 1.0946 0.0018 36 1 2.8512 3.1552 -1.9350 37 1 4.6642 2.8738 -1.7474 38 1 4.3619 0.4540 -2.4476 39 1 2.5489 0.7341 -2.6355 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403426644.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:47 Heat of formation + Delta-G solvation = -12.913599 kcal Electronic energy + Delta-G solvation = -19115.221004 eV Core-core repulsion = 16215.724879 eV Total energy + Delta-G solvation = -2899.496125 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.76555 -39.20462 -37.79001 -35.89068 -35.13863 -31.60421 -31.33686 -30.07838 -26.80169 -26.10980 -24.12448 -23.05640 -22.91315 -22.39740 -20.95671 -19.28261 -18.61980 -17.25928 -16.95274 -16.71669 -16.41136 -15.94219 -15.78236 -14.98113 -14.81251 -14.77746 -14.18430 -14.02944 -13.71709 -13.60267 -13.33284 -12.93362 -12.80676 -12.77190 -12.61379 -12.32606 -12.26958 -12.06129 -11.63036 -11.51768 -11.26075 -11.07157 -10.92240 -10.89625 -9.58674 -9.39485 -8.88378 -8.58195 -6.25796 0.91625 1.03153 1.39011 1.49574 1.53819 2.22559 2.48806 2.73474 2.94932 3.49156 3.62913 3.69042 3.90330 4.15948 4.21617 4.27382 4.33379 4.41241 4.47587 4.50849 4.55443 4.66556 4.80726 4.86656 4.91141 4.99844 5.01939 5.12739 5.13968 5.34331 5.36300 5.44021 5.49893 5.65175 5.95776 6.03363 6.06796 6.22347 6.36286 6.55025 6.77672 6.95039 7.07953 8.38653 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.035852 B = 0.003969 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.801158 B = 7052.143487 C = 7278.256353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.687 5.687 3 C 0.132 3.868 4 H 0.105 0.895 5 C 0.037 3.963 6 O -0.320 6.320 7 C 0.006 3.994 8 C -0.180 4.180 9 C -0.150 4.150 10 C 0.052 3.948 11 C -0.499 4.499 12 H 0.075 0.925 13 C 0.031 3.969 14 N -0.839 5.839 15 Si 0.984 3.016 16 H -0.258 1.258 17 H -0.266 1.266 18 H -0.267 1.267 19 C -0.201 4.201 20 C -0.122 4.122 21 C -0.154 4.154 22 C -0.176 4.176 23 C -0.152 4.152 24 H 0.014 0.986 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.345 0.655 28 H 0.045 0.955 29 H 0.056 0.944 30 H 0.112 0.888 31 H 0.106 0.894 32 H 0.285 0.715 33 H 0.110 0.890 34 H 0.121 0.879 35 H 0.087 0.913 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.777 -0.861 -13.687 13.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.316 5.316 3 C 0.022 3.978 4 H 0.123 0.877 5 C -0.040 4.040 6 O -0.236 6.236 7 C -0.038 4.038 8 C -0.199 4.199 9 C -0.170 4.170 10 C 0.050 3.950 11 C -0.529 4.529 12 H 0.093 0.907 13 C -0.181 4.181 14 N -0.467 5.467 15 Si 0.805 3.195 16 H -0.182 1.182 17 H -0.190 1.190 18 H -0.192 1.192 19 C -0.221 4.221 20 C -0.140 4.140 21 C -0.173 4.173 22 C -0.214 4.214 23 C -0.189 4.189 24 H 0.033 0.967 25 H 0.095 0.905 26 H 0.094 0.906 27 H 0.163 0.837 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.130 0.870 31 H 0.124 0.876 32 H 0.096 0.904 33 H 0.128 0.872 34 H 0.139 0.861 35 H 0.105 0.895 36 H 0.121 0.879 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.892 -1.030 -14.428 14.588 hybrid contribution -0.371 0.795 2.044 2.224 sum -2.263 -0.235 -12.385 12.592 Atomic orbital electron populations 1.22320 0.87150 1.02403 1.00651 1.60510 1.08105 1.12833 1.50182 1.21252 0.95434 0.90458 0.90634 0.87731 1.23361 0.90931 0.95772 0.93956 1.85780 1.59149 1.57837 1.20816 1.18694 1.01562 0.99533 0.83978 1.20797 1.02675 0.99901 0.96488 1.20947 1.02177 1.01263 0.92625 1.17960 0.92237 0.90816 0.93940 1.19753 1.00019 1.37234 0.95943 0.90661 1.26714 0.93788 0.93875 1.03771 1.69877 1.01572 1.35264 1.39951 0.85133 0.79655 0.78358 0.76380 1.18182 1.19031 1.19235 1.20848 1.05901 1.00095 0.95214 1.19888 0.99365 1.00991 0.93790 1.22017 0.97165 1.05836 0.92265 1.23103 1.03270 0.92326 1.02657 1.22780 1.03246 0.97030 0.95860 0.96700 0.90525 0.90577 0.83743 0.93631 0.92589 0.87042 0.87576 0.90438 0.87169 0.86064 0.89454 0.87930 0.88556 0.88812 0.88292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 10.48 127.69 1.34 1.82 16 2 N -0.69 -16.62 6.55 -514.62 -3.37 -20.00 16 3 C 0.13 3.24 2.58 44.92 0.12 3.35 16 4 H 0.10 2.18 7.62 -2.39 -0.02 2.16 16 5 C 0.04 1.15 4.40 71.98 0.32 1.46 16 6 O -0.32 -12.15 8.53 -89.90 -0.77 -12.91 16 7 C 0.01 0.28 6.71 22.79 0.15 0.44 16 8 C -0.18 -8.49 8.96 22.11 0.20 -8.30 16 9 C -0.15 -8.06 8.62 22.49 0.19 -7.86 16 10 C 0.05 2.88 5.56 -21.28 -0.12 2.77 16 11 C -0.50 -27.30 9.05 23.40 0.21 -27.09 16 12 H 0.08 3.96 7.88 -2.91 -0.02 3.94 16 13 C 0.03 1.59 5.22 85.23 0.44 2.03 16 14 N -0.84 -44.60 10.85 21.82 0.24 -44.36 16 15 Si 0.98 38.80 29.58 68.60 2.03 40.83 16 16 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 17 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 18 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 19 C -0.20 -10.01 9.74 22.48 0.22 -9.79 16 20 C -0.12 -5.55 9.92 22.11 0.22 -5.33 16 21 C -0.15 -3.76 5.18 -10.79 -0.06 -3.82 16 22 C -0.18 -3.46 10.18 30.62 0.31 -3.15 16 23 C -0.15 -3.04 10.19 30.62 0.31 -2.73 16 24 H 0.01 0.32 7.41 -2.39 -0.02 0.30 16 25 H 0.08 1.30 8.13 -2.39 -0.02 1.28 16 26 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 27 H 0.34 9.51 8.00 -89.69 -0.72 8.79 16 28 H 0.05 1.44 6.94 -2.39 -0.02 1.43 16 29 H 0.06 1.73 7.64 -2.38 -0.02 1.71 16 30 H 0.11 4.70 6.27 -2.91 -0.02 4.68 16 31 H 0.11 5.94 6.17 -2.91 -0.02 5.92 16 32 H 0.29 13.70 8.30 -92.71 -0.77 12.93 16 33 H 0.11 5.09 8.06 -2.91 -0.02 5.07 16 34 H 0.12 4.85 8.06 -2.91 -0.02 4.83 16 35 H 0.09 2.59 7.43 -2.39 -0.02 2.57 16 36 H 0.10 1.74 8.07 -2.39 -0.02 1.72 16 37 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 39 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -58.86 322.16 2.31 -56.55 By element: Atomic # 1 Polarization: 35.76 SS G_CDS: 0.32 Total: 36.08 kcal Atomic # 6 Polarization: -60.05 SS G_CDS: 3.86 Total: -56.19 kcal Atomic # 7 Polarization: -61.23 SS G_CDS: -3.14 Total: -64.36 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: -0.77 Total: -12.91 kcal Atomic # 14 Polarization: 38.80 SS G_CDS: 2.03 Total: 40.83 kcal Total: -58.86 2.31 -56.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403426644.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.639 kcal (2) G-P(sol) polarization free energy of solvation -58.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds