Wall clock time and date at job start Mon Mar 30 2020 06:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46909 * 1 3 3 C 1.46905 * 110.99581 * 2 1 4 4 H 1.09000 * 110.05606 * 33.59105 * 3 2 1 5 5 C 1.54267 * 110.03510 * 272.16858 * 3 2 1 6 6 C 1.54892 * 104.19535 * 217.10779 * 5 3 2 7 7 C 1.54890 * 102.74599 * 37.94565 * 6 5 3 8 8 C 1.53873 * 110.02796 * 155.00153 * 3 2 1 9 9 H 1.09001 * 110.07352 * 238.59176 * 8 3 2 10 10 O 1.42899 * 110.03610 * 0.02562 * 8 3 2 11 11 C 1.35676 * 117.00260 * 202.42536 * 10 8 3 12 12 C 1.39314 * 119.81771 * 174.31091 * 11 10 8 13 13 C 1.36442 * 120.18458 * 180.28156 * 12 11 10 14 14 C 1.40829 * 119.80920 * 359.96890 * 13 12 11 15 15 C 1.41217 * 120.17741 * 180.02562 * 14 13 12 16 16 H 1.07996 * 120.00134 * 28.18030 * 15 14 13 17 17 C 1.39890 * 119.99791 * 208.18179 * 15 14 13 18 18 N 1.30884 * 120.00378 * 13.05213 * 17 15 14 19 19 Si 1.86800 * 119.99844 * 193.05165 * 17 15 14 20 20 H 1.48503 * 109.47212 * 60.00019 * 19 17 15 21 21 H 1.48499 * 109.47173 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47110 * 300.00092 * 19 17 15 23 23 C 1.40840 * 119.64281 * 0.02681 * 14 13 12 24 24 C 1.36435 * 119.81148 * 359.97438 * 23 14 13 25 25 H 1.09006 * 109.46687 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46642 * 299.99549 * 1 2 3 27 27 H 1.08998 * 109.46921 * 59.99933 * 1 2 3 28 28 H 1.00906 * 110.99648 * 236.05408 * 2 1 3 29 29 H 1.09002 * 110.48451 * 98.42794 * 5 3 2 30 30 H 1.09005 * 110.59516 * 335.84308 * 5 3 2 31 31 H 1.08998 * 110.75388 * 279.63184 * 6 5 3 32 32 H 1.09001 * 110.91334 * 156.32849 * 6 5 3 33 33 H 1.09003 * 110.48180 * 203.38189 * 7 6 5 34 34 H 1.08998 * 110.60431 * 80.79340 * 7 6 5 35 35 H 1.08000 * 119.91067 * 0.27522 * 12 11 10 36 36 H 1.07998 * 120.09256 * 180.02562 * 13 12 11 37 37 H 0.96991 * 120.00224 * 180.02562 * 18 17 15 38 38 H 1.07999 * 120.09063 * 180.02562 * 23 14 13 39 39 H 1.08000 * 119.90180 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.3331 2.0261 0.5665 5 6 2.1336 1.8846 -1.4483 6 6 3.4304 2.7314 -1.4292 7 6 4.3545 1.9200 -0.4875 8 6 3.4075 1.3940 0.6109 9 1 3.4311 2.0592 1.4742 10 8 3.7942 0.0742 0.9991 11 6 4.7601 -0.0313 1.9459 12 6 5.0984 -1.2836 2.4539 13 6 6.0646 -1.3978 3.4104 14 6 6.7210 -0.2452 3.8835 15 6 7.7227 -0.3544 4.8730 16 1 8.3075 -1.2589 4.9518 17 6 7.9574 0.7090 5.7511 18 7 7.0980 1.6928 5.8319 19 14 9.4973 0.7248 6.8083 20 1 10.6979 0.7095 5.9344 21 1 9.5099 1.9508 7.6462 22 1 9.5081 -0.4736 7.6851 23 6 6.3731 1.0170 3.3646 24 6 5.4046 1.1138 2.4085 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8306 -0.5261 -0.7815 29 1 1.2776 2.5037 -1.7169 30 1 2.2329 1.0503 -2.1428 31 1 3.2379 3.7235 -1.0209 32 1 3.8630 2.8031 -2.4271 33 1 5.1194 2.5650 -0.0549 34 1 4.8152 1.0902 -1.0235 35 1 4.5943 -2.1666 2.0897 36 1 6.3260 -2.3695 3.8029 37 1 7.2609 2.4303 6.4404 38 1 6.8721 1.9057 3.7219 39 1 5.1364 2.0811 2.0098 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403458171.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:25 Heat of formation + Delta-G solvation = -19.956159 kcal Electronic energy + Delta-G solvation = -19498.179394 eV Core-core repulsion = 16598.377880 eV Total energy + Delta-G solvation = -2899.801514 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.49841 -37.63479 -35.74001 -33.99895 -33.13774 -29.59831 -29.15126 -27.82831 -27.53815 -24.66929 -24.08304 -21.30531 -20.94208 -20.71397 -19.25205 -17.33269 -16.99596 -16.23488 -15.22711 -14.90851 -14.61562 -14.29011 -13.87534 -13.71682 -13.29705 -13.25633 -12.83934 -12.44040 -12.23359 -11.97684 -11.77217 -11.68777 -11.33297 -11.08925 -11.01644 -10.94182 -10.86826 -10.80464 -10.46459 -10.33406 -9.71899 -9.63744 -9.22260 -8.92923 -8.18144 -7.54245 -6.82368 -6.59774 -4.16896 2.87374 3.06402 3.12615 3.15948 3.29630 4.02638 4.07325 4.49085 4.59674 4.67061 4.75505 5.02041 5.30952 5.37066 5.47936 5.51321 5.56425 5.62581 5.75446 5.78865 5.86058 5.90363 5.97280 6.09945 6.17586 6.27904 6.40985 6.43560 6.83572 6.99741 7.13038 7.17508 7.39557 7.50626 7.55604 7.67618 8.02207 8.10486 8.27387 8.59626 8.79098 9.00793 9.11390 10.35542 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.034963 B = 0.004436 C = 0.004193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.652463 B = 6310.397975 C = 6676.869487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.667 5.667 3 C 0.089 3.911 4 H 0.083 0.917 5 C -0.151 4.151 6 C -0.120 4.120 7 C -0.149 4.149 8 C 0.097 3.903 9 H 0.069 0.931 10 O -0.294 6.294 11 C 0.005 3.995 12 C -0.118 4.118 13 C -0.191 4.191 14 C 0.084 3.916 15 C -0.467 4.467 16 H 0.074 0.926 17 C 0.074 3.926 18 N -0.810 5.810 19 Si 0.907 3.093 20 H -0.266 1.266 21 H -0.280 1.280 22 H -0.267 1.267 23 C -0.127 4.127 24 C -0.181 4.181 25 H 0.065 0.935 26 H 0.061 0.939 27 H 0.014 0.986 28 H 0.344 0.656 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.277 0.723 38 H 0.119 0.881 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.236 2.634 -11.005 13.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.297 5.297 3 C -0.022 4.022 4 H 0.101 0.899 5 C -0.190 4.190 6 C -0.158 4.158 7 C -0.187 4.187 8 C 0.038 3.962 9 H 0.087 0.913 10 O -0.209 6.209 11 C -0.039 4.039 12 C -0.137 4.137 13 C -0.211 4.211 14 C 0.082 3.918 15 C -0.498 4.498 16 H 0.092 0.908 17 C -0.141 4.141 18 N -0.438 5.438 19 Si 0.733 3.267 20 H -0.191 1.191 21 H -0.205 1.205 22 H -0.192 1.192 23 C -0.147 4.147 24 C -0.200 4.200 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.033 0.967 28 H 0.163 0.837 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.114 0.886 36 H 0.116 0.884 37 H 0.088 0.912 38 H 0.137 0.863 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.340 2.601 -10.256 13.472 hybrid contribution 0.522 0.690 -0.225 0.894 sum -7.818 3.290 -10.480 13.483 Atomic orbital electron populations 1.22233 0.88567 1.01591 0.99748 1.60199 1.06337 1.12605 1.50522 1.22365 0.95157 0.90131 0.94508 0.89864 1.23111 0.98249 1.00144 0.97539 1.22350 0.95360 0.98405 0.99711 1.22995 0.98233 1.00180 0.97311 1.22738 0.92053 0.85497 0.95901 0.91344 1.86001 1.53848 1.26024 1.54994 1.18682 0.94967 0.94204 0.96015 1.19613 1.00585 0.93865 0.99668 1.20646 1.00134 0.98071 1.02268 1.17570 0.91846 0.90843 0.91590 1.19398 1.16583 1.00846 1.12957 0.90791 1.25818 0.96717 0.94669 0.96936 1.69809 1.32786 1.08791 1.32396 0.86389 0.82337 0.78285 0.79738 1.19055 1.20533 1.19186 1.20948 0.98771 0.98801 0.96137 1.20669 1.01456 0.95493 1.02356 0.91652 0.91970 0.96709 0.83662 0.91817 0.91354 0.91428 0.91524 0.91103 0.90498 0.88581 0.88416 0.91190 0.86303 0.88759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.53 60.07 0.63 0.94 16 2 N -0.67 -9.11 5.64 -112.80 -0.64 -9.75 16 3 C 0.09 1.19 3.23 -66.59 -0.22 0.97 16 4 H 0.08 1.06 7.81 -51.93 -0.41 0.65 16 5 C -0.15 -1.62 6.45 -25.07 -0.16 -1.78 16 6 C -0.12 -1.33 6.91 -24.74 -0.17 -1.50 16 7 C -0.15 -2.15 6.03 -25.07 -0.15 -2.30 16 8 C 0.10 1.59 2.81 -25.61 -0.07 1.52 16 9 H 0.07 1.21 6.40 -51.93 -0.33 0.88 16 10 O -0.29 -5.98 8.75 -18.73 -0.16 -6.15 16 11 C 0.01 0.12 6.64 -38.78 -0.26 -0.14 16 12 C -0.12 -2.83 9.92 -39.83 -0.40 -3.22 16 13 C -0.19 -4.85 9.74 -39.25 -0.38 -5.23 16 14 C 0.08 2.28 5.55 -106.80 -0.59 1.69 16 15 C -0.47 -12.72 9.04 -37.83 -0.34 -13.06 16 16 H 0.07 1.93 7.88 -52.49 -0.41 1.52 16 17 C 0.07 1.90 5.21 -17.34 -0.09 1.81 16 18 N -0.81 -21.59 10.92 55.54 0.61 -20.98 16 19 Si 0.91 19.24 29.58 -169.99 -5.03 14.21 16 20 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 21 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 22 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 23 C -0.13 -3.37 8.61 -39.25 -0.34 -3.70 16 24 C -0.18 -4.31 8.67 -39.83 -0.35 -4.65 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.69 8.07 -51.93 -0.42 0.27 16 27 H 0.01 0.14 8.14 -51.93 -0.42 -0.29 16 28 H 0.34 4.45 8.19 -39.29 -0.32 4.13 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.71 7.56 -51.93 -0.39 0.32 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.07 1.05 7.41 -51.93 -0.38 0.66 16 34 H 0.08 1.18 8.08 -51.93 -0.42 0.76 16 35 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 36 H 0.10 2.31 8.06 -52.49 -0.42 1.89 16 37 H 0.28 6.78 8.30 -40.82 -0.34 6.44 16 38 H 0.12 3.24 6.25 -52.49 -0.33 2.91 16 39 H 0.09 2.01 5.23 -52.49 -0.27 1.74 16 LS Contribution 313.56 15.07 4.73 4.73 Total: -1.00 -28.72 313.56 -9.16 -37.88 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -5.79 Total: 8.70 kcal Atomic # 6 Polarization: -25.76 SS G_CDS: -2.88 Total: -28.65 kcal Atomic # 7 Polarization: -30.70 SS G_CDS: -0.03 Total: -30.73 kcal Atomic # 8 Polarization: -5.98 SS G_CDS: -0.16 Total: -6.15 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.03 Total: 14.21 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.72 -9.16 -37.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403458171.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.928 kcal (2) G-P(sol) polarization free energy of solvation -28.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds