Wall clock time and date at job start Mon Mar 30 2020 06:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46909 * 1 3 3 C 1.46905 * 110.99581 * 2 1 4 4 H 1.09000 * 110.05606 * 33.59105 * 3 2 1 5 5 C 1.54267 * 110.03510 * 272.16858 * 3 2 1 6 6 C 1.54892 * 104.19535 * 217.10779 * 5 3 2 7 7 C 1.54890 * 102.74599 * 37.94565 * 6 5 3 8 8 C 1.53873 * 110.02796 * 155.00153 * 3 2 1 9 9 H 1.09001 * 110.07352 * 238.59176 * 8 3 2 10 10 O 1.42899 * 110.03610 * 0.02562 * 8 3 2 11 11 C 1.35676 * 117.00260 * 202.42536 * 10 8 3 12 12 C 1.39314 * 119.81771 * 174.31091 * 11 10 8 13 13 C 1.36442 * 120.18458 * 180.28156 * 12 11 10 14 14 C 1.40829 * 119.80920 * 359.96890 * 13 12 11 15 15 C 1.41217 * 120.17741 * 180.02562 * 14 13 12 16 16 H 1.07996 * 120.00134 * 28.18030 * 15 14 13 17 17 C 1.39890 * 119.99791 * 208.18179 * 15 14 13 18 18 N 1.30884 * 120.00378 * 13.05213 * 17 15 14 19 19 Si 1.86800 * 119.99844 * 193.05165 * 17 15 14 20 20 H 1.48503 * 109.47212 * 60.00019 * 19 17 15 21 21 H 1.48499 * 109.47173 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47110 * 300.00092 * 19 17 15 23 23 C 1.40840 * 119.64281 * 0.02681 * 14 13 12 24 24 C 1.36435 * 119.81148 * 359.97438 * 23 14 13 25 25 H 1.09006 * 109.46687 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46642 * 299.99549 * 1 2 3 27 27 H 1.08998 * 109.46921 * 59.99933 * 1 2 3 28 28 H 1.00906 * 110.99648 * 236.05408 * 2 1 3 29 29 H 1.09002 * 110.48451 * 98.42794 * 5 3 2 30 30 H 1.09005 * 110.59516 * 335.84308 * 5 3 2 31 31 H 1.08998 * 110.75388 * 279.63184 * 6 5 3 32 32 H 1.09001 * 110.91334 * 156.32849 * 6 5 3 33 33 H 1.09003 * 110.48180 * 203.38189 * 7 6 5 34 34 H 1.08998 * 110.60431 * 80.79340 * 7 6 5 35 35 H 1.08000 * 119.91067 * 0.27522 * 12 11 10 36 36 H 1.07998 * 120.09256 * 180.02562 * 13 12 11 37 37 H 0.96991 * 120.00224 * 180.02562 * 18 17 15 38 38 H 1.07999 * 120.09063 * 180.02562 * 23 14 13 39 39 H 1.08000 * 119.90180 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.3331 2.0261 0.5665 5 6 2.1336 1.8846 -1.4483 6 6 3.4304 2.7314 -1.4292 7 6 4.3545 1.9200 -0.4875 8 6 3.4075 1.3940 0.6109 9 1 3.4311 2.0592 1.4742 10 8 3.7942 0.0742 0.9991 11 6 4.7601 -0.0313 1.9459 12 6 5.0984 -1.2836 2.4539 13 6 6.0646 -1.3978 3.4104 14 6 6.7210 -0.2452 3.8835 15 6 7.7227 -0.3544 4.8730 16 1 8.3075 -1.2589 4.9518 17 6 7.9574 0.7090 5.7511 18 7 7.0980 1.6928 5.8319 19 14 9.4973 0.7248 6.8083 20 1 10.6979 0.7095 5.9344 21 1 9.5099 1.9508 7.6462 22 1 9.5081 -0.4736 7.6851 23 6 6.3731 1.0170 3.3646 24 6 5.4046 1.1138 2.4085 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8306 -0.5261 -0.7815 29 1 1.2776 2.5037 -1.7169 30 1 2.2329 1.0503 -2.1428 31 1 3.2379 3.7235 -1.0209 32 1 3.8630 2.8031 -2.4271 33 1 5.1194 2.5650 -0.0549 34 1 4.8152 1.0902 -1.0235 35 1 4.5943 -2.1666 2.0897 36 1 6.3260 -2.3695 3.8029 37 1 7.2609 2.4303 6.4404 38 1 6.8721 1.9057 3.7219 39 1 5.1364 2.0811 2.0098 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403458171.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:24 Heat of formation + Delta-G solvation = -36.213755 kcal Electronic energy + Delta-G solvation = -19498.884376 eV Core-core repulsion = 16598.377880 eV Total energy + Delta-G solvation = -2900.506496 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.94055 -39.20533 -37.36201 -35.16614 -34.90649 -31.51989 -31.02447 -28.90220 -28.74919 -26.56825 -25.07014 -23.09722 -22.66739 -21.80236 -20.65417 -19.24241 -18.65559 -17.47995 -16.89693 -16.16571 -15.93628 -15.66529 -15.63327 -15.02885 -14.68390 -14.48423 -14.24930 -14.11096 -13.67650 -13.53363 -13.35678 -13.07599 -12.75420 -12.66955 -12.54421 -12.18436 -12.11579 -12.00412 -11.84879 -11.63735 -11.55293 -11.29539 -11.09040 -10.78715 -9.51227 -9.15628 -8.76340 -8.52572 -6.20034 0.99353 1.09655 1.39873 1.51238 1.55212 2.25290 2.67375 2.80830 3.38400 3.58279 3.64659 3.75159 4.07125 4.24619 4.34163 4.38226 4.43008 4.45944 4.58570 4.63880 4.69881 4.74428 4.89350 4.94063 5.02084 5.06469 5.10222 5.11557 5.19794 5.20699 5.34682 5.42472 5.59078 5.72810 6.03755 6.10868 6.15208 6.30821 6.55628 6.63319 6.90407 7.00158 7.21017 8.44270 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.034963 B = 0.004436 C = 0.004193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.652463 B = 6310.397975 C = 6676.869487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.692 5.692 3 C 0.092 3.908 4 H 0.089 0.911 5 C -0.140 4.140 6 C -0.111 4.111 7 C -0.148 4.148 8 C 0.082 3.918 9 H 0.052 0.948 10 O -0.297 6.297 11 C 0.016 3.984 12 C -0.128 4.128 13 C -0.200 4.200 14 C 0.050 3.950 15 C -0.504 4.504 16 H 0.074 0.926 17 C 0.032 3.968 18 N -0.843 5.843 19 Si 0.983 3.017 20 H -0.261 1.261 21 H -0.270 1.270 22 H -0.261 1.261 23 C -0.147 4.147 24 C -0.182 4.182 25 H 0.071 0.929 26 H 0.056 0.944 27 H 0.034 0.966 28 H 0.347 0.653 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.117 0.883 36 H 0.107 0.893 37 H 0.284 0.716 38 H 0.103 0.897 39 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.077 3.107 -12.227 15.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.323 5.323 3 C -0.019 4.019 4 H 0.107 0.893 5 C -0.179 4.179 6 C -0.149 4.149 7 C -0.186 4.186 8 C 0.025 3.975 9 H 0.070 0.930 10 O -0.211 6.211 11 C -0.028 4.028 12 C -0.146 4.146 13 C -0.219 4.219 14 C 0.048 3.952 15 C -0.535 4.535 16 H 0.092 0.908 17 C -0.181 4.181 18 N -0.471 5.471 19 Si 0.804 3.196 20 H -0.185 1.185 21 H -0.194 1.194 22 H -0.185 1.185 23 C -0.167 4.167 24 C -0.201 4.201 25 H 0.090 0.910 26 H 0.075 0.925 27 H 0.053 0.947 28 H 0.166 0.834 29 H 0.105 0.895 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.135 0.865 36 H 0.126 0.874 37 H 0.094 0.906 38 H 0.121 0.879 39 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -9.208 3.073 -11.502 15.051 hybrid contribution 0.642 0.537 0.052 0.839 sum -8.565 3.611 -11.450 14.748 Atomic orbital electron populations 1.22234 0.86860 1.02300 1.00414 1.60147 1.08132 1.12851 1.51125 1.22339 0.92889 0.90503 0.96149 0.89325 1.23039 0.98839 1.00472 0.95520 1.22343 0.94590 0.98307 0.99680 1.22934 0.98272 1.00124 0.97269 1.23151 0.94895 0.83355 0.96141 0.93013 1.86005 1.52581 1.28725 1.53787 1.18802 0.94691 0.93777 0.95555 1.19876 1.00323 0.95040 0.99390 1.20843 1.00366 0.98069 1.02665 1.17918 0.92948 0.91770 0.92581 1.19665 1.17695 1.01912 1.14204 0.90832 1.26686 0.99693 0.93789 0.97888 1.69879 1.34458 1.09456 1.33276 0.85250 0.77820 0.78711 0.77853 1.18548 1.19396 1.18534 1.20909 1.00112 0.98186 0.97497 1.20831 1.00710 0.96849 1.01665 0.91009 0.92474 0.94710 0.83402 0.89457 0.90791 0.90327 0.89738 0.92129 0.91553 0.86455 0.87447 0.90552 0.87888 0.86838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 10.53 127.69 1.34 1.95 16 2 N -0.69 -17.58 5.64 -510.80 -2.88 -20.46 16 3 C 0.09 2.25 3.23 45.64 0.15 2.40 16 4 H 0.09 2.06 7.81 -2.39 -0.02 2.05 16 5 C -0.14 -2.51 6.45 31.67 0.20 -2.30 16 6 C -0.11 -2.13 6.91 31.89 0.22 -1.91 16 7 C -0.15 -4.08 6.03 31.67 0.19 -3.89 16 8 C 0.08 2.64 2.81 31.32 0.09 2.73 16 9 H 0.05 1.82 6.40 -2.39 -0.02 1.80 16 10 O -0.30 -11.88 8.75 -89.93 -0.79 -12.67 16 11 C 0.02 0.76 6.64 22.79 0.15 0.91 16 12 C -0.13 -6.10 9.92 22.11 0.22 -5.88 16 13 C -0.20 -10.32 9.74 22.48 0.22 -10.10 16 14 C 0.05 2.81 5.55 -21.28 -0.12 2.69 16 15 C -0.50 -28.30 9.04 23.40 0.21 -28.09 16 16 H 0.07 3.96 7.88 -2.91 -0.02 3.94 16 17 C 0.03 1.65 5.21 85.23 0.44 2.10 16 18 N -0.84 -45.99 10.92 21.82 0.24 -45.75 16 19 Si 0.98 39.77 29.58 68.60 2.03 41.79 16 20 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 21 H -0.27 -10.32 7.11 99.48 0.71 -9.62 16 22 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 23 C -0.15 -8.09 8.61 22.49 0.19 -7.90 16 24 C -0.18 -8.82 8.67 22.11 0.19 -8.63 16 25 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 26 H 0.06 1.15 8.07 -2.39 -0.02 1.13 16 27 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.35 8.28 8.19 -89.69 -0.73 7.54 16 29 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.07 1.28 7.56 -2.38 -0.02 1.26 16 31 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.06 1.77 7.41 -2.39 -0.02 1.75 16 34 H 0.07 1.97 8.08 -2.39 -0.02 1.95 16 35 H 0.12 5.02 8.06 -2.91 -0.02 4.99 16 36 H 0.11 5.17 8.06 -2.91 -0.02 5.15 16 37 H 0.28 14.10 8.30 -92.71 -0.77 13.33 16 38 H 0.10 5.89 6.25 -2.91 -0.02 5.87 16 39 H 0.11 4.93 5.23 -2.91 -0.02 4.92 16 Total: -1.00 -62.97 313.56 2.62 -60.35 By element: Atomic # 1 Polarization: 32.34 SS G_CDS: 0.31 Total: 32.65 kcal Atomic # 6 Polarization: -59.63 SS G_CDS: 3.71 Total: -55.92 kcal Atomic # 7 Polarization: -63.57 SS G_CDS: -2.64 Total: -66.21 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: -0.79 Total: -12.67 kcal Atomic # 14 Polarization: 39.77 SS G_CDS: 2.03 Total: 41.79 kcal Total: -62.97 2.62 -60.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403458171.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.136 kcal (2) G-P(sol) polarization free energy of solvation -62.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds