Wall clock time and date at job start Mon Mar 30 2020 06:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46908 * 110.99633 * 2 1 4 4 H 1.08998 * 110.01788 * 326.39475 * 3 2 1 5 5 C 1.54266 * 110.02778 * 87.83259 * 3 2 1 6 6 C 1.54899 * 104.19635 * 142.89501 * 5 3 2 7 7 C 1.54891 * 102.74561 * 322.05638 * 6 5 3 8 8 C 1.53874 * 110.03360 * 204.99566 * 3 2 1 9 9 H 1.09002 * 110.02972 * 121.43192 * 8 3 2 10 10 O 1.42902 * 110.03073 * 0.05404 * 8 3 2 11 11 C 1.35669 * 117.00188 * 155.90495 * 10 8 3 12 12 C 1.39322 * 119.81414 * 5.25823 * 11 10 8 13 13 C 1.36437 * 120.18060 * 179.75750 * 12 11 10 14 14 C 1.40835 * 119.81275 * 0.51868 * 13 12 11 15 15 C 1.41215 * 120.17624 * 179.71946 * 14 13 12 16 16 H 1.08003 * 119.99943 * 156.35620 * 15 14 13 17 17 C 1.39894 * 120.00228 * 336.34608 * 15 14 13 18 18 N 1.30879 * 119.99853 * 341.51021 * 17 15 14 19 19 Si 1.86795 * 119.99973 * 161.50270 * 17 15 14 20 20 H 1.48497 * 109.47059 * 94.78314 * 19 17 15 21 21 H 1.48498 * 109.47398 * 214.78329 * 19 17 15 22 22 H 1.48502 * 109.47306 * 334.78729 * 19 17 15 23 23 C 1.40835 * 119.64193 * 359.73567 * 14 13 12 24 24 C 1.36428 * 119.80955 * 0.02562 * 23 14 13 25 25 H 1.08995 * 109.47171 * 299.99972 * 1 2 3 26 26 H 1.08994 * 109.47026 * 59.99922 * 1 2 3 27 27 H 1.09000 * 109.46422 * 179.97438 * 1 2 3 28 28 H 1.00900 * 111.00146 * 236.04944 * 2 1 3 29 29 H 1.09001 * 110.49170 * 261.56827 * 5 3 2 30 30 H 1.09000 * 110.48926 * 24.21743 * 5 3 2 31 31 H 1.09000 * 110.75585 * 203.74190 * 6 5 3 32 32 H 1.08999 * 110.91419 * 80.44370 * 6 5 3 33 33 H 1.09001 * 110.48865 * 279.26331 * 7 6 5 34 34 H 1.08995 * 110.60043 * 156.67701 * 7 6 5 35 35 H 1.07994 * 119.90808 * 0.02562 * 12 11 10 36 36 H 1.08002 * 120.09212 * 180.24716 * 13 12 11 37 37 H 0.97003 * 119.99894 * 179.97438 * 18 17 15 38 38 H 1.07997 * 120.09090 * 180.02562 * 23 14 13 39 39 H 1.08004 * 119.90520 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.3328 2.0255 -0.5668 5 6 2.1335 1.8844 1.4483 6 6 3.4304 2.7313 1.4294 7 6 4.3545 1.9201 0.4875 8 6 3.4075 1.3942 -0.6109 9 1 3.4304 2.0598 -1.4737 10 8 3.7934 0.0746 -1.0007 11 6 4.7344 -0.0302 -1.9724 12 6 5.3549 1.1170 -2.4624 13 6 6.3057 1.0198 -3.4361 14 6 6.6514 -0.2436 -3.9536 15 6 7.6302 -0.3525 -4.9656 16 1 8.1691 -1.2791 -5.0982 17 6 7.9016 0.7396 -5.7967 18 7 7.0374 1.7175 -5.8953 19 14 9.4975 0.8021 -6.7654 20 1 9.2688 0.2661 -8.1312 21 1 9.9659 2.2083 -6.8575 22 1 10.5266 -0.0184 -6.0776 23 6 6.0154 -1.3977 -3.4565 24 6 5.0703 -1.2836 -2.4792 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3632 -1.0277 -0.0005 28 1 1.8307 -0.5261 -0.7814 29 1 1.2777 2.5035 1.7171 30 1 2.2337 1.0488 2.1411 31 1 3.8614 2.8002 2.4282 32 1 3.2405 3.7246 1.0228 33 1 4.8134 1.0902 1.0250 34 1 5.1208 2.5632 0.0548 35 1 5.0857 2.0853 -2.0673 36 1 6.7887 1.9096 -3.8120 37 1 7.2258 2.4750 -6.4713 38 1 6.2752 -2.3702 -3.8478 39 1 4.5819 -2.1676 -2.0966 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403458175.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:27 Heat of formation + Delta-G solvation = -22.581512 kcal Electronic energy + Delta-G solvation = -19516.714823 eV Core-core repulsion = 16616.799465 eV Total energy + Delta-G solvation = -2899.915357 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.58828 -37.59317 -35.75055 -34.06697 -33.27907 -29.68038 -29.26469 -27.76000 -27.59698 -24.77148 -24.07182 -21.34434 -21.03053 -20.52302 -19.19819 -17.43115 -17.09648 -16.12289 -15.28934 -15.14101 -14.85743 -14.18121 -13.93401 -13.71687 -13.62285 -13.06525 -12.90529 -12.46919 -12.25876 -12.02457 -11.82613 -11.48037 -11.15533 -11.07803 -10.99344 -10.95226 -10.87434 -10.71633 -10.51263 -10.35596 -9.88364 -9.74787 -9.34486 -8.97337 -8.28091 -7.63476 -7.00296 -6.73330 -4.24359 2.77132 2.98054 3.07814 3.12074 3.22012 3.92411 3.95514 4.55125 4.61234 4.67363 4.75631 5.17430 5.38531 5.41802 5.50848 5.53166 5.61502 5.68415 5.76219 5.85687 5.92207 5.98730 6.04762 6.12541 6.17084 6.28995 6.37929 6.44965 6.75379 6.91608 7.07249 7.16925 7.29283 7.44510 7.57254 7.63253 7.93957 8.01246 8.17250 8.47592 8.67550 8.90664 9.01052 10.20930 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.034516 B = 0.004464 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.016669 B = 6271.347836 C = 6649.579675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.679 5.679 3 C 0.086 3.914 4 H 0.050 0.950 5 C -0.112 4.112 6 C -0.123 4.123 7 C -0.141 4.141 8 C 0.085 3.915 9 H 0.069 0.931 10 O -0.312 6.312 11 C -0.010 4.010 12 C -0.172 4.172 13 C -0.136 4.136 14 C 0.087 3.913 15 C -0.463 4.463 16 H 0.077 0.923 17 C 0.076 3.924 18 N -0.800 5.800 19 Si 0.905 3.095 20 H -0.271 1.271 21 H -0.276 1.276 22 H -0.261 1.261 23 C -0.198 4.198 24 C -0.112 4.112 25 H 0.059 0.941 26 H 0.017 0.983 27 H 0.064 0.936 28 H 0.358 0.642 29 H 0.058 0.942 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.095 0.905 36 H 0.121 0.879 37 H 0.279 0.721 38 H 0.099 0.901 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.513 2.652 8.948 11.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.315 5.315 3 C -0.024 4.024 4 H 0.068 0.932 5 C -0.150 4.150 6 C -0.161 4.161 7 C -0.179 4.179 8 C 0.027 3.973 9 H 0.087 0.913 10 O -0.227 6.227 11 C -0.053 4.053 12 C -0.191 4.191 13 C -0.156 4.156 14 C 0.085 3.915 15 C -0.493 4.493 16 H 0.095 0.905 17 C -0.141 4.141 18 N -0.426 5.426 19 Si 0.730 3.270 20 H -0.197 1.197 21 H -0.201 1.201 22 H -0.185 1.185 23 C -0.218 4.218 24 C -0.131 4.131 25 H 0.078 0.922 26 H 0.035 0.965 27 H 0.083 0.917 28 H 0.181 0.819 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.113 0.887 36 H 0.138 0.862 37 H 0.090 0.910 38 H 0.117 0.883 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.592 2.626 9.563 12.489 hybrid contribution 0.520 0.706 -1.604 1.828 sum -7.072 3.332 7.959 11.156 Atomic orbital electron populations 1.22241 0.88816 1.01501 0.99733 1.60429 1.06412 1.12985 1.51625 1.22286 0.93632 0.90261 0.96224 0.93219 1.22431 0.96987 0.99216 0.96352 1.22395 0.95855 0.98227 0.99655 1.22864 0.97912 1.00148 0.96954 1.22891 0.92990 0.85063 0.96333 0.91314 1.85785 1.56263 1.26810 1.53886 1.18582 0.96774 0.94295 0.95636 1.20640 1.01428 0.95421 1.01636 1.20959 0.99213 0.98782 0.96610 1.17591 0.91386 0.90895 0.91628 1.19477 1.18196 0.98628 1.12999 0.90529 1.25871 0.97180 0.94773 0.96282 1.69845 1.32816 1.08197 1.31749 0.86350 0.82401 0.78432 0.79840 1.19655 1.20124 1.18453 1.20586 1.00985 0.97970 1.02242 1.19611 1.00661 0.93652 0.99189 0.92228 0.96471 0.91676 0.81907 0.92280 0.90175 0.91355 0.91702 0.90255 0.91314 0.88711 0.86163 0.91043 0.88329 0.88529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.53 60.07 0.63 0.94 16 2 N -0.68 -9.79 6.39 -112.81 -0.72 -10.51 16 3 C 0.09 1.21 3.25 -66.59 -0.22 0.99 16 4 H 0.05 0.66 7.81 -51.93 -0.41 0.26 16 5 C -0.11 -1.34 6.49 -25.07 -0.16 -1.51 16 6 C -0.12 -1.44 6.91 -24.73 -0.17 -1.62 16 7 C -0.14 -2.09 6.13 -25.07 -0.15 -2.24 16 8 C 0.09 1.40 2.78 -25.61 -0.07 1.33 16 9 H 0.07 1.19 6.28 -51.93 -0.33 0.86 16 10 O -0.31 -6.15 7.72 -18.71 -0.14 -6.29 16 11 C -0.01 -0.22 6.66 -38.78 -0.26 -0.48 16 12 C -0.17 -4.01 8.72 -39.83 -0.35 -4.36 16 13 C -0.14 -3.53 8.65 -39.25 -0.34 -3.87 16 14 C 0.09 2.33 5.58 -106.80 -0.60 1.73 16 15 C -0.46 -12.31 9.04 -37.83 -0.34 -12.65 16 16 H 0.08 1.96 7.91 -52.48 -0.42 1.54 16 17 C 0.08 1.90 5.13 -17.34 -0.09 1.81 16 18 N -0.80 -20.70 10.93 55.54 0.61 -20.09 16 19 Si 0.91 18.69 29.60 -169.99 -5.03 13.65 16 20 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 21 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 22 H -0.26 -5.35 7.11 56.52 0.40 -4.94 16 23 C -0.20 -4.88 9.74 -39.25 -0.38 -5.26 16 24 C -0.11 -2.59 9.92 -39.83 -0.40 -2.98 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.02 0.19 8.07 -51.93 -0.42 -0.23 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.36 5.75 6.96 -39.29 -0.27 5.47 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 1.03 8.05 -51.93 -0.42 0.61 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 1.27 8.08 -51.93 -0.42 0.85 16 34 H 0.07 1.03 7.54 -51.93 -0.39 0.64 16 35 H 0.09 1.99 5.33 -52.49 -0.28 1.71 16 36 H 0.12 3.21 6.11 -52.49 -0.32 2.89 16 37 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 38 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 39 H 0.10 2.00 8.06 -52.48 -0.42 1.58 16 LS Contribution 312.76 15.07 4.71 4.71 Total: -1.00 -27.22 312.76 -9.23 -36.45 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -5.76 Total: 10.24 kcal Atomic # 6 Polarization: -25.26 SS G_CDS: -2.89 Total: -28.16 kcal Atomic # 7 Polarization: -30.49 SS G_CDS: -0.11 Total: -30.60 kcal Atomic # 8 Polarization: -6.15 SS G_CDS: -0.14 Total: -6.29 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.65 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.22 -9.23 -36.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403458175.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.866 kcal (2) G-P(sol) polarization free energy of solvation -27.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds