Wall clock time and date at job start Mon Mar 30 2020 06:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46908 * 110.99633 * 2 1 4 4 H 1.08998 * 110.01788 * 326.39475 * 3 2 1 5 5 C 1.54266 * 110.02778 * 87.83259 * 3 2 1 6 6 C 1.54899 * 104.19635 * 142.89501 * 5 3 2 7 7 C 1.54891 * 102.74561 * 322.05638 * 6 5 3 8 8 C 1.53874 * 110.03360 * 204.99566 * 3 2 1 9 9 H 1.09002 * 110.02972 * 121.43192 * 8 3 2 10 10 O 1.42902 * 110.03073 * 0.05404 * 8 3 2 11 11 C 1.35669 * 117.00188 * 155.90495 * 10 8 3 12 12 C 1.39322 * 119.81414 * 5.25823 * 11 10 8 13 13 C 1.36437 * 120.18060 * 179.75750 * 12 11 10 14 14 C 1.40835 * 119.81275 * 0.51868 * 13 12 11 15 15 C 1.41215 * 120.17624 * 179.71946 * 14 13 12 16 16 H 1.08003 * 119.99943 * 156.35620 * 15 14 13 17 17 C 1.39894 * 120.00228 * 336.34608 * 15 14 13 18 18 N 1.30879 * 119.99853 * 341.51021 * 17 15 14 19 19 Si 1.86795 * 119.99973 * 161.50270 * 17 15 14 20 20 H 1.48497 * 109.47059 * 94.78314 * 19 17 15 21 21 H 1.48498 * 109.47398 * 214.78329 * 19 17 15 22 22 H 1.48502 * 109.47306 * 334.78729 * 19 17 15 23 23 C 1.40835 * 119.64193 * 359.73567 * 14 13 12 24 24 C 1.36428 * 119.80955 * 0.02562 * 23 14 13 25 25 H 1.08995 * 109.47171 * 299.99972 * 1 2 3 26 26 H 1.08994 * 109.47026 * 59.99922 * 1 2 3 27 27 H 1.09000 * 109.46422 * 179.97438 * 1 2 3 28 28 H 1.00900 * 111.00146 * 236.04944 * 2 1 3 29 29 H 1.09001 * 110.49170 * 261.56827 * 5 3 2 30 30 H 1.09000 * 110.48926 * 24.21743 * 5 3 2 31 31 H 1.09000 * 110.75585 * 203.74190 * 6 5 3 32 32 H 1.08999 * 110.91419 * 80.44370 * 6 5 3 33 33 H 1.09001 * 110.48865 * 279.26331 * 7 6 5 34 34 H 1.08995 * 110.60043 * 156.67701 * 7 6 5 35 35 H 1.07994 * 119.90808 * 0.02562 * 12 11 10 36 36 H 1.08002 * 120.09212 * 180.24716 * 13 12 11 37 37 H 0.97003 * 119.99894 * 179.97438 * 18 17 15 38 38 H 1.07997 * 120.09090 * 180.02562 * 23 14 13 39 39 H 1.08004 * 119.90520 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.3328 2.0255 -0.5668 5 6 2.1335 1.8844 1.4483 6 6 3.4304 2.7313 1.4294 7 6 4.3545 1.9201 0.4875 8 6 3.4075 1.3942 -0.6109 9 1 3.4304 2.0598 -1.4737 10 8 3.7934 0.0746 -1.0007 11 6 4.7344 -0.0302 -1.9724 12 6 5.3549 1.1170 -2.4624 13 6 6.3057 1.0198 -3.4361 14 6 6.6514 -0.2436 -3.9536 15 6 7.6302 -0.3525 -4.9656 16 1 8.1691 -1.2791 -5.0982 17 6 7.9016 0.7396 -5.7967 18 7 7.0374 1.7175 -5.8953 19 14 9.4975 0.8021 -6.7654 20 1 9.2688 0.2661 -8.1312 21 1 9.9659 2.2083 -6.8575 22 1 10.5266 -0.0184 -6.0776 23 6 6.0154 -1.3977 -3.4565 24 6 5.0703 -1.2836 -2.4792 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3632 -1.0277 -0.0005 28 1 1.8307 -0.5261 -0.7814 29 1 1.2777 2.5035 1.7171 30 1 2.2337 1.0488 2.1411 31 1 3.8614 2.8002 2.4282 32 1 3.2405 3.7246 1.0228 33 1 4.8134 1.0902 1.0250 34 1 5.1208 2.5632 0.0548 35 1 5.0857 2.0853 -2.0673 36 1 6.7887 1.9096 -3.8120 37 1 7.2258 2.4750 -6.4713 38 1 6.2752 -2.3702 -3.8478 39 1 4.5819 -2.1676 -2.0966 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403458175.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:26 Heat of formation + Delta-G solvation = -37.418393 kcal Electronic energy + Delta-G solvation = -19517.358198 eV Core-core repulsion = 16616.799465 eV Total energy + Delta-G solvation = -2900.558733 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.05485 -39.17510 -37.32761 -35.20705 -35.05933 -31.55347 -31.09382 -28.93449 -28.78463 -26.62786 -25.10766 -23.10363 -22.76172 -21.67688 -20.55451 -19.29385 -18.73015 -17.47443 -16.85647 -16.45835 -16.10411 -15.78993 -15.54841 -15.07102 -14.81627 -14.69612 -14.17743 -14.10096 -13.70969 -13.56527 -13.36689 -13.07073 -12.76788 -12.58408 -12.37508 -12.20545 -12.03063 -11.95486 -11.87366 -11.66355 -11.52434 -11.38430 -11.16262 -10.80661 -9.54809 -9.35250 -8.89119 -8.60505 -6.21769 0.94846 1.06058 1.39012 1.49137 1.55369 2.22308 2.49026 2.73079 3.43980 3.54478 3.62394 3.74011 4.04659 4.25022 4.32650 4.39137 4.40034 4.48168 4.57081 4.59795 4.68860 4.80243 4.88988 4.99975 5.01572 5.03574 5.09817 5.13786 5.16569 5.22435 5.38395 5.43523 5.55111 5.68137 6.00139 6.07117 6.13012 6.26361 6.43505 6.58469 6.83524 6.95536 7.13671 8.35815 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.034516 B = 0.004464 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.016669 B = 6271.347836 C = 6649.579675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.692 5.692 3 C 0.087 3.913 4 H 0.059 0.941 5 C -0.104 4.104 6 C -0.113 4.113 7 C -0.142 4.142 8 C 0.074 3.926 9 H 0.058 0.942 10 O -0.313 6.313 11 C 0.003 3.997 12 C -0.174 4.174 13 C -0.158 4.158 14 C 0.054 3.946 15 C -0.501 4.501 16 H 0.075 0.925 17 C 0.035 3.965 18 N -0.832 5.832 19 Si 0.980 3.020 20 H -0.263 1.263 21 H -0.267 1.267 22 H -0.259 1.259 23 C -0.207 4.207 24 C -0.120 4.120 25 H 0.073 0.927 26 H 0.019 0.981 27 H 0.073 0.927 28 H 0.346 0.654 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.114 0.886 36 H 0.105 0.895 37 H 0.287 0.713 38 H 0.108 0.892 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.301 3.268 9.990 13.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.326 5.326 3 C -0.023 4.023 4 H 0.077 0.923 5 C -0.143 4.143 6 C -0.151 4.151 7 C -0.180 4.180 8 C 0.017 3.983 9 H 0.076 0.924 10 O -0.228 6.228 11 C -0.041 4.041 12 C -0.193 4.193 13 C -0.177 4.177 14 C 0.052 3.948 15 C -0.530 4.530 16 H 0.093 0.907 17 C -0.178 4.178 18 N -0.458 5.458 19 Si 0.801 3.199 20 H -0.188 1.188 21 H -0.191 1.191 22 H -0.183 1.183 23 C -0.227 4.227 24 C -0.138 4.138 25 H 0.092 0.908 26 H 0.038 0.962 27 H 0.092 0.908 28 H 0.166 0.834 29 H 0.102 0.898 30 H 0.091 0.909 31 H 0.104 0.896 32 H 0.098 0.902 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.131 0.869 36 H 0.123 0.877 37 H 0.097 0.903 38 H 0.126 0.874 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.408 3.246 10.632 13.939 hybrid contribution 0.615 0.506 -1.817 1.984 sum -7.793 3.752 8.815 12.350 Atomic orbital electron populations 1.22310 0.87027 1.02393 1.00478 1.60509 1.08172 1.12948 1.50964 1.22378 0.91861 0.90544 0.97542 0.92328 1.22403 0.98051 0.99267 0.94531 1.22391 0.94758 0.98229 0.99740 1.22841 0.98102 1.00036 0.96997 1.23237 0.95223 0.83287 0.96595 0.92365 1.85806 1.55150 1.29116 1.52679 1.18681 0.96331 0.93884 0.95199 1.20803 1.00716 0.96771 1.00963 1.20921 1.00624 0.98189 0.97996 1.17938 0.92432 0.91835 0.92573 1.19729 1.19444 0.99616 1.14261 0.90681 1.26708 1.00287 0.93919 0.96935 1.69895 1.34487 1.08867 1.32600 0.85229 0.77649 0.78756 0.78297 1.18789 1.19111 1.18314 1.20791 1.01229 0.97951 1.02684 1.19885 1.00282 0.94877 0.98783 0.90819 0.96242 0.90841 0.83359 0.89802 0.90930 0.89643 0.90204 0.91696 0.91910 0.86854 0.87701 0.90295 0.87376 0.86160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 10.53 127.69 1.34 1.91 16 2 N -0.69 -18.73 6.39 -510.83 -3.26 -21.99 16 3 C 0.09 2.26 3.25 45.64 0.15 2.40 16 4 H 0.06 1.42 7.81 -2.39 -0.02 1.40 16 5 C -0.10 -2.19 6.49 31.67 0.21 -1.98 16 6 C -0.11 -2.33 6.91 31.89 0.22 -2.11 16 7 C -0.14 -4.03 6.13 31.67 0.19 -3.83 16 8 C 0.07 2.35 2.78 31.32 0.09 2.44 16 9 H 0.06 1.97 6.28 -2.39 -0.01 1.96 16 10 O -0.31 -12.10 7.72 -89.86 -0.69 -12.79 16 11 C 0.00 0.13 6.66 22.79 0.15 0.29 16 12 C -0.17 -8.20 8.72 22.11 0.19 -8.01 16 13 C -0.16 -8.44 8.65 22.48 0.19 -8.25 16 14 C 0.05 2.99 5.58 -21.28 -0.12 2.87 16 15 C -0.50 -27.44 9.04 23.40 0.21 -27.23 16 16 H 0.08 3.96 7.91 -2.91 -0.02 3.94 16 17 C 0.04 1.80 5.13 85.24 0.44 2.24 16 18 N -0.83 -44.02 10.93 21.82 0.24 -43.78 16 19 Si 0.98 38.62 29.60 68.60 2.03 40.65 16 20 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 21 H -0.27 -9.99 7.11 99.48 0.71 -9.29 16 22 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 23 C -0.21 -10.37 9.74 22.48 0.22 -10.15 16 24 C -0.12 -5.50 9.92 22.11 0.22 -5.28 16 25 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.02 0.39 8.07 -2.39 -0.02 0.37 16 27 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.35 10.73 6.96 -89.69 -0.62 10.11 16 29 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.07 1.66 8.05 -2.39 -0.02 1.64 16 31 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.08 1.43 8.14 -2.39 -0.02 1.42 16 33 H 0.06 2.03 8.08 -2.39 -0.02 2.01 16 34 H 0.06 1.83 7.54 -2.39 -0.02 1.81 16 35 H 0.11 4.79 5.33 -2.91 -0.02 4.78 16 36 H 0.11 5.85 6.11 -2.91 -0.02 5.83 16 37 H 0.29 13.69 8.30 -92.71 -0.77 12.92 16 38 H 0.11 5.05 8.06 -2.91 -0.02 5.02 16 39 H 0.12 4.87 8.06 -2.91 -0.02 4.84 16 Total: -1.00 -59.36 312.76 2.44 -56.92 By element: Atomic # 1 Polarization: 35.26 SS G_CDS: 0.42 Total: 35.68 kcal Atomic # 6 Polarization: -58.39 SS G_CDS: 3.71 Total: -54.68 kcal Atomic # 7 Polarization: -62.75 SS G_CDS: -3.02 Total: -65.77 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: -0.69 Total: -12.79 kcal Atomic # 14 Polarization: 38.62 SS G_CDS: 2.03 Total: 40.65 kcal Total: -59.36 2.44 -56.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403458175.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.505 kcal (2) G-P(sol) polarization free energy of solvation -59.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds