Wall clock time and date at job start Mon Mar 30 2020 06:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46893 * 111.00091 * 2 1 4 4 H 1.09000 * 110.02241 * 33.61100 * 3 2 1 5 5 C 1.54268 * 110.07538 * 272.19177 * 3 2 1 6 6 C 1.54897 * 104.19561 * 264.30295 * 5 3 2 7 7 C 1.54892 * 102.74406 * 322.05803 * 6 5 3 8 8 C 1.53882 * 110.02981 * 154.99971 * 3 2 1 9 9 H 1.08997 * 110.03177 * 0.05003 * 8 3 2 10 10 O 1.42903 * 110.02938 * 238.61607 * 8 3 2 11 11 C 1.35678 * 116.99457 * 156.80427 * 10 8 3 12 12 C 1.39311 * 119.81955 * 5.09301 * 11 10 8 13 13 C 1.36433 * 120.18278 * 179.75593 * 12 11 10 14 14 C 1.40830 * 119.81382 * 0.52262 * 13 12 11 15 15 C 1.41219 * 120.18138 * 179.76343 * 14 13 12 16 16 H 1.08003 * 119.99624 * 206.37545 * 15 14 13 17 17 C 1.39888 * 120.00060 * 26.36911 * 15 14 13 18 18 N 1.30881 * 119.99776 * 13.47370 * 17 15 14 19 19 Si 1.86798 * 120.00142 * 193.47269 * 17 15 14 20 20 H 1.48503 * 109.46968 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47205 * 119.99954 * 19 17 15 22 22 H 1.48499 * 109.47082 * 240.00358 * 19 17 15 23 23 C 1.40832 * 119.64285 * 359.73173 * 14 13 12 24 24 C 1.36444 * 119.80836 * 0.02562 * 23 14 13 25 25 H 1.09007 * 109.47164 * 60.00048 * 1 2 3 26 26 H 1.09000 * 109.47699 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47445 * 300.00206 * 1 2 3 28 28 H 1.00898 * 110.99466 * 123.95579 * 2 1 3 29 29 H 1.08990 * 110.48617 * 22.98068 * 5 3 2 30 30 H 1.09004 * 110.48652 * 145.62630 * 5 3 2 31 31 H 1.09002 * 110.75301 * 80.37010 * 6 5 3 32 32 H 1.08993 * 110.75682 * 203.74356 * 6 5 3 33 33 H 1.08997 * 110.48675 * 279.25751 * 7 6 5 34 34 H 1.09004 * 110.48046 * 156.62368 * 7 6 5 35 35 H 1.07996 * 119.90388 * 0.02562 * 12 11 10 36 36 H 1.08004 * 120.09333 * 180.25256 * 13 12 11 37 37 H 0.97004 * 119.99528 * 179.97438 * 18 17 15 38 38 H 1.08002 * 120.09949 * 179.97438 * 23 14 13 39 39 H 1.07996 * 119.90550 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3329 2.0254 0.5669 5 6 2.1335 1.8856 -1.4479 6 6 3.6134 1.6071 -1.8104 7 6 4.3543 1.9210 -0.4869 8 6 3.4076 1.3938 0.6110 9 1 3.7025 0.3870 0.9067 10 8 3.4373 2.2656 1.7429 11 6 4.4102 2.0472 2.6631 12 6 5.3837 1.0795 2.4255 13 6 6.3683 0.8572 3.3435 14 6 6.3922 1.6016 4.5387 15 6 7.4048 1.3744 5.4964 16 1 7.2211 1.5914 6.5384 17 6 8.6458 0.8683 5.0956 18 7 8.9671 0.8521 3.8270 19 14 9.8444 0.2155 6.3710 20 1 9.2462 0.3444 7.7241 21 1 10.1337 -1.2142 6.0924 22 1 11.1058 0.9968 6.3105 23 6 5.4012 2.5743 4.7735 24 6 4.4264 2.7878 3.8429 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8305 -0.5262 0.7814 29 1 1.4678 1.3357 -2.1131 30 1 1.9238 2.9542 -1.4948 31 1 3.7521 0.5634 -2.0927 32 1 3.9476 2.2715 -2.6072 33 1 4.5034 2.9953 -0.3787 34 1 5.3094 1.3969 -0.4509 35 1 5.3614 0.5067 1.5103 36 1 7.1247 0.1094 3.1560 37 1 9.8278 0.5015 3.5491 38 1 5.4123 3.1492 5.6877 39 1 3.6654 3.5330 4.0215 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403458178.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:28 Heat of formation + Delta-G solvation = -26.044148 kcal Electronic energy + Delta-G solvation = -19428.622244 eV Core-core repulsion = 16528.556735 eV Total energy + Delta-G solvation = -2900.065509 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.58667 -37.68468 -35.91745 -33.98744 -33.23957 -29.70479 -29.25863 -27.80493 -27.65231 -24.94758 -24.10157 -21.43219 -20.99940 -20.20471 -19.43243 -17.45256 -17.16592 -16.18066 -15.58998 -15.08129 -14.60384 -14.12223 -13.95398 -13.85670 -13.65074 -13.14149 -12.92436 -12.53395 -12.18723 -11.91540 -11.84116 -11.65174 -11.30984 -11.09515 -11.08099 -10.91454 -10.84136 -10.64802 -10.59915 -10.34681 -9.79733 -9.75548 -9.33223 -9.04656 -8.50646 -7.64603 -6.97306 -6.68686 -4.26010 2.76439 2.97030 3.09238 3.14473 3.20291 3.85889 3.96486 4.45415 4.63288 4.66578 4.80919 5.13969 5.28522 5.40304 5.48532 5.55815 5.65940 5.67226 5.75367 5.80143 5.94040 6.01552 6.02963 6.10775 6.14612 6.25638 6.35821 6.48818 6.74937 6.90366 6.99504 7.08194 7.28074 7.30217 7.44371 7.56974 7.92681 8.01525 8.17039 8.46675 8.67029 8.91843 9.00166 10.25563 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.033166 B = 0.004351 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.044604 B = 6434.494353 C = 6648.845468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.687 5.687 3 C 0.083 3.917 4 H 0.059 0.941 5 C -0.109 4.109 6 C -0.117 4.117 7 C -0.143 4.143 8 C 0.087 3.913 9 H 0.074 0.926 10 O -0.325 6.325 11 C -0.005 4.005 12 C -0.174 4.174 13 C -0.130 4.130 14 C 0.086 3.914 15 C -0.463 4.463 16 H 0.076 0.924 17 C 0.073 3.927 18 N -0.805 5.805 19 Si 0.908 3.092 20 H -0.262 1.262 21 H -0.273 1.273 22 H -0.275 1.275 23 C -0.195 4.195 24 C -0.117 4.117 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.023 0.977 28 H 0.344 0.656 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.097 0.903 36 H 0.124 0.876 37 H 0.278 0.722 38 H 0.099 0.901 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.520 -1.316 -8.025 12.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.319 5.319 3 C -0.027 4.027 4 H 0.077 0.923 5 C -0.147 4.147 6 C -0.155 4.155 7 C -0.181 4.181 8 C 0.029 3.971 9 H 0.092 0.908 10 O -0.241 6.241 11 C -0.048 4.048 12 C -0.193 4.193 13 C -0.149 4.149 14 C 0.083 3.917 15 C -0.493 4.493 16 H 0.094 0.906 17 C -0.143 4.143 18 N -0.432 5.432 19 Si 0.733 3.267 20 H -0.185 1.185 21 H -0.199 1.199 22 H -0.201 1.201 23 C -0.214 4.214 24 C -0.136 4.136 25 H 0.082 0.918 26 H 0.085 0.915 27 H 0.041 0.959 28 H 0.163 0.837 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.115 0.885 36 H 0.141 0.859 37 H 0.089 0.911 38 H 0.117 0.883 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.421 -1.299 -8.834 12.980 hybrid contribution 0.654 -0.176 1.361 1.520 sum -8.767 -1.475 -7.473 11.614 Atomic orbital electron populations 1.22224 0.87933 1.01638 1.00374 1.60584 1.07684 1.13528 1.50077 1.22152 0.94738 0.89460 0.96307 0.92291 1.22320 0.97325 0.99983 0.95044 1.22383 0.94739 1.01503 0.96838 1.22871 0.98665 1.02312 0.94257 1.22900 0.94070 0.94328 0.85772 0.90794 1.85871 1.51522 1.54995 1.31678 1.18577 0.92411 1.02642 0.91201 1.20666 0.97616 1.00683 1.00365 1.21020 0.97756 1.00970 0.95155 1.17614 0.91679 0.89594 0.92783 1.19505 0.96392 1.38082 0.95328 0.90570 1.25860 0.99019 0.93567 0.95853 1.69824 1.21764 1.35275 1.16353 0.86260 0.79784 0.79050 0.81584 1.18526 1.19854 1.20075 1.20614 0.99379 1.01794 0.99649 1.19613 1.00213 1.00909 0.92847 0.91835 0.91529 0.95875 0.83743 0.91034 0.91582 0.91129 0.91751 0.90569 0.91034 0.88538 0.85850 0.91128 0.88283 0.88690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.53 60.06 0.63 0.92 16 2 N -0.69 -8.56 6.62 -112.82 -0.75 -9.30 16 3 C 0.08 1.15 3.06 -66.59 -0.20 0.95 16 4 H 0.06 0.88 7.62 -51.93 -0.40 0.48 16 5 C -0.11 -1.31 6.50 -25.07 -0.16 -1.47 16 6 C -0.12 -1.45 6.91 -24.73 -0.17 -1.62 16 7 C -0.14 -2.20 6.08 -25.07 -0.15 -2.35 16 8 C 0.09 1.44 2.48 -25.61 -0.06 1.38 16 9 H 0.07 1.27 5.66 -51.93 -0.29 0.98 16 10 O -0.32 -6.63 9.69 -18.74 -0.18 -6.82 16 11 C -0.01 -0.12 6.65 -38.78 -0.26 -0.38 16 12 C -0.17 -4.09 8.70 -39.83 -0.35 -4.44 16 13 C -0.13 -3.37 8.62 -39.25 -0.34 -3.71 16 14 C 0.09 2.29 5.57 -106.80 -0.59 1.70 16 15 C -0.46 -12.34 9.05 -37.83 -0.34 -12.68 16 16 H 0.08 1.95 7.88 -52.48 -0.41 1.54 16 17 C 0.07 1.84 5.21 -17.34 -0.09 1.75 16 18 N -0.81 -20.96 10.82 55.54 0.60 -20.36 16 19 Si 0.91 18.82 29.58 -169.99 -5.03 13.79 16 20 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 21 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 22 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 23 C -0.19 -4.83 9.74 -39.25 -0.38 -5.21 16 24 C -0.12 -2.74 9.92 -39.83 -0.40 -3.13 16 25 H 0.06 0.60 7.96 -51.92 -0.41 0.19 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.02 0.24 8.07 -51.93 -0.42 -0.18 16 28 H 0.34 4.36 8.09 -39.29 -0.32 4.04 16 29 H 0.07 0.80 7.85 -51.93 -0.41 0.39 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.08 1.24 8.08 -51.93 -0.42 0.82 16 34 H 0.07 1.14 7.49 -51.93 -0.39 0.75 16 35 H 0.10 2.04 5.29 -52.49 -0.28 1.77 16 36 H 0.12 3.31 6.13 -52.48 -0.32 2.99 16 37 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 38 H 0.10 2.28 8.06 -52.49 -0.42 1.86 16 39 H 0.09 2.01 8.06 -52.49 -0.42 1.59 16 LS Contribution 314.16 15.07 4.73 4.73 Total: -1.00 -27.68 314.16 -9.23 -36.91 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -5.74 Total: 9.34 kcal Atomic # 6 Polarization: -25.42 SS G_CDS: -2.87 Total: -28.29 kcal Atomic # 7 Polarization: -29.52 SS G_CDS: -0.15 Total: -29.66 kcal Atomic # 8 Polarization: -6.63 SS G_CDS: -0.18 Total: -6.82 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -27.68 -9.23 -36.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403458178.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.864 kcal (2) G-P(sol) polarization free energy of solvation -27.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds