Wall clock time and date at job start Mon Mar 30 2020 06:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46893 * 111.00091 * 2 1 4 4 H 1.09000 * 110.02241 * 33.61100 * 3 2 1 5 5 C 1.54268 * 110.07538 * 272.19177 * 3 2 1 6 6 C 1.54897 * 104.19561 * 264.30295 * 5 3 2 7 7 C 1.54892 * 102.74406 * 322.05803 * 6 5 3 8 8 C 1.53882 * 110.02981 * 154.99971 * 3 2 1 9 9 H 1.08997 * 110.03177 * 0.05003 * 8 3 2 10 10 O 1.42903 * 110.02938 * 238.61607 * 8 3 2 11 11 C 1.35678 * 116.99457 * 156.80427 * 10 8 3 12 12 C 1.39311 * 119.81955 * 5.09301 * 11 10 8 13 13 C 1.36433 * 120.18278 * 179.75593 * 12 11 10 14 14 C 1.40830 * 119.81382 * 0.52262 * 13 12 11 15 15 C 1.41219 * 120.18138 * 179.76343 * 14 13 12 16 16 H 1.08003 * 119.99624 * 206.37545 * 15 14 13 17 17 C 1.39888 * 120.00060 * 26.36911 * 15 14 13 18 18 N 1.30881 * 119.99776 * 13.47370 * 17 15 14 19 19 Si 1.86798 * 120.00142 * 193.47269 * 17 15 14 20 20 H 1.48503 * 109.46968 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47205 * 119.99954 * 19 17 15 22 22 H 1.48499 * 109.47082 * 240.00358 * 19 17 15 23 23 C 1.40832 * 119.64285 * 359.73173 * 14 13 12 24 24 C 1.36444 * 119.80836 * 0.02562 * 23 14 13 25 25 H 1.09007 * 109.47164 * 60.00048 * 1 2 3 26 26 H 1.09000 * 109.47699 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47445 * 300.00206 * 1 2 3 28 28 H 1.00898 * 110.99466 * 123.95579 * 2 1 3 29 29 H 1.08990 * 110.48617 * 22.98068 * 5 3 2 30 30 H 1.09004 * 110.48652 * 145.62630 * 5 3 2 31 31 H 1.09002 * 110.75301 * 80.37010 * 6 5 3 32 32 H 1.08993 * 110.75682 * 203.74356 * 6 5 3 33 33 H 1.08997 * 110.48675 * 279.25751 * 7 6 5 34 34 H 1.09004 * 110.48046 * 156.62368 * 7 6 5 35 35 H 1.07996 * 119.90388 * 0.02562 * 12 11 10 36 36 H 1.08004 * 120.09333 * 180.25256 * 13 12 11 37 37 H 0.97004 * 119.99528 * 179.97438 * 18 17 15 38 38 H 1.08002 * 120.09949 * 179.97438 * 23 14 13 39 39 H 1.07996 * 119.90550 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3329 2.0254 0.5669 5 6 2.1335 1.8856 -1.4479 6 6 3.6134 1.6071 -1.8104 7 6 4.3543 1.9210 -0.4869 8 6 3.4076 1.3938 0.6110 9 1 3.7025 0.3870 0.9067 10 8 3.4373 2.2656 1.7429 11 6 4.4102 2.0472 2.6631 12 6 5.3837 1.0795 2.4255 13 6 6.3683 0.8572 3.3435 14 6 6.3922 1.6016 4.5387 15 6 7.4048 1.3744 5.4964 16 1 7.2211 1.5914 6.5384 17 6 8.6458 0.8683 5.0956 18 7 8.9671 0.8521 3.8270 19 14 9.8444 0.2155 6.3710 20 1 9.2462 0.3444 7.7241 21 1 10.1337 -1.2142 6.0924 22 1 11.1058 0.9968 6.3105 23 6 5.4012 2.5743 4.7735 24 6 4.4264 2.7878 3.8429 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8305 -0.5262 0.7814 29 1 1.4678 1.3357 -2.1131 30 1 1.9238 2.9542 -1.4948 31 1 3.7521 0.5634 -2.0927 32 1 3.9476 2.2715 -2.6072 33 1 4.5034 2.9953 -0.3787 34 1 5.3094 1.3969 -0.4509 35 1 5.3614 0.5067 1.5103 36 1 7.1247 0.1094 3.1560 37 1 9.8278 0.5015 3.5491 38 1 5.4123 3.1492 5.6877 39 1 3.6654 3.5330 4.0215 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403458178.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:28 Heat of formation + Delta-G solvation = -41.632041 kcal Electronic energy + Delta-G solvation = -19429.298186 eV Core-core repulsion = 16528.556735 eV Total energy + Delta-G solvation = -2900.741450 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.07545 -39.24207 -37.51636 -35.24853 -34.89858 -31.59415 -31.10599 -29.00431 -28.82709 -26.72292 -25.18282 -23.20511 -22.70539 -21.50606 -20.68991 -19.30643 -18.85135 -17.46622 -17.02384 -16.57103 -16.12128 -15.73035 -15.28220 -15.09426 -15.04273 -14.69970 -14.21552 -14.15643 -13.76810 -13.51205 -13.23557 -13.05177 -12.81515 -12.75813 -12.50675 -12.33048 -12.06585 -11.94409 -11.81176 -11.62244 -11.56234 -11.41598 -11.16404 -10.89610 -9.57558 -9.49981 -8.88268 -8.57319 -6.24974 0.92152 1.03534 1.39688 1.50202 1.54528 2.23152 2.47014 2.73643 3.35095 3.50273 3.63114 3.71599 3.96199 4.24684 4.32037 4.37622 4.41631 4.44747 4.55343 4.58605 4.68830 4.80102 4.85517 4.95754 5.00805 5.01911 5.04619 5.13888 5.16391 5.21219 5.37523 5.39829 5.53224 5.65786 5.96971 6.00529 6.06787 6.22670 6.28748 6.56778 6.79964 6.95516 7.09493 8.39028 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.033166 B = 0.004351 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.044604 B = 6434.494353 C = 6648.845468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.689 5.689 3 C 0.089 3.911 4 H 0.049 0.951 5 C -0.102 4.102 6 C -0.107 4.107 7 C -0.145 4.145 8 C 0.078 3.922 9 H 0.067 0.933 10 O -0.330 6.330 11 C 0.005 3.995 12 C -0.174 4.174 13 C -0.150 4.150 14 C 0.053 3.947 15 C -0.499 4.499 16 H 0.075 0.925 17 C 0.032 3.968 18 N -0.837 5.837 19 Si 0.984 3.016 20 H -0.259 1.259 21 H -0.265 1.265 22 H -0.267 1.267 23 C -0.203 4.203 24 C -0.125 4.125 25 H 0.074 0.926 26 H 0.081 0.919 27 H 0.019 0.981 28 H 0.341 0.659 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.115 0.885 36 H 0.109 0.891 37 H 0.286 0.714 38 H 0.110 0.890 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.336 -1.543 -8.963 13.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.320 5.320 3 C -0.021 4.021 4 H 0.067 0.933 5 C -0.140 4.140 6 C -0.145 4.145 7 C -0.183 4.183 8 C 0.021 3.979 9 H 0.084 0.916 10 O -0.246 6.246 11 C -0.039 4.039 12 C -0.192 4.192 13 C -0.170 4.170 14 C 0.051 3.949 15 C -0.529 4.529 16 H 0.093 0.907 17 C -0.181 4.181 18 N -0.464 5.464 19 Si 0.805 3.195 20 H -0.182 1.182 21 H -0.190 1.190 22 H -0.192 1.192 23 C -0.222 4.222 24 C -0.144 4.144 25 H 0.092 0.908 26 H 0.100 0.900 27 H 0.037 0.963 28 H 0.159 0.841 29 H 0.106 0.894 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.132 0.868 36 H 0.126 0.874 37 H 0.096 0.904 38 H 0.128 0.872 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -10.265 -1.522 -9.793 14.268 hybrid contribution 0.780 -0.077 1.551 1.738 sum -9.485 -1.599 -8.242 12.666 Atomic orbital electron populations 1.22310 0.86382 1.02815 1.00690 1.60666 1.09100 1.12402 1.49869 1.22126 0.92563 0.90266 0.97149 0.93269 1.22322 0.97288 1.00659 0.93750 1.22353 0.94401 1.02252 0.95462 1.22856 0.98349 1.01311 0.95781 1.23246 0.96546 0.93284 0.84834 0.91556 1.85873 1.50422 1.56033 1.32286 1.18681 0.92301 1.01467 0.91480 1.20805 0.97033 1.00900 1.00505 1.20977 0.98532 1.01425 0.96056 1.17962 0.92754 0.90647 0.93513 1.19754 0.97554 1.40200 0.95366 0.90673 1.26714 1.00371 0.93072 0.97956 1.69882 1.22682 1.35704 1.18158 0.85135 0.77221 0.78538 0.78646 1.18217 1.18988 1.19221 1.20817 0.99347 1.01574 1.00501 1.19897 1.00382 1.01373 0.92740 0.90760 0.89986 0.96271 0.84138 0.89443 0.90784 0.90671 0.89852 0.91664 0.92146 0.86751 0.87363 0.90379 0.87224 0.86375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.53 127.69 1.34 1.84 16 2 N -0.69 -15.84 6.62 -510.84 -3.38 -19.22 16 3 C 0.09 2.31 3.06 45.64 0.14 2.45 16 4 H 0.05 1.38 7.62 -2.39 -0.02 1.36 16 5 C -0.10 -2.17 6.50 31.67 0.21 -1.96 16 6 C -0.11 -2.38 6.91 31.89 0.22 -2.16 16 7 C -0.14 -4.31 6.08 31.67 0.19 -4.12 16 8 C 0.08 2.51 2.48 31.32 0.08 2.59 16 9 H 0.07 2.25 5.66 -2.39 -0.01 2.23 16 10 O -0.33 -13.26 9.69 -89.95 -0.87 -14.14 16 11 C 0.00 0.21 6.65 22.79 0.15 0.36 16 12 C -0.17 -8.26 8.70 22.11 0.19 -8.07 16 13 C -0.15 -8.06 8.62 22.48 0.19 -7.87 16 14 C 0.05 2.94 5.57 -21.28 -0.12 2.82 16 15 C -0.50 -27.30 9.05 23.40 0.21 -27.09 16 16 H 0.08 3.96 7.88 -2.91 -0.02 3.94 16 17 C 0.03 1.62 5.21 85.23 0.44 2.07 16 18 N -0.84 -44.47 10.82 21.82 0.24 -44.23 16 19 Si 0.98 38.78 29.58 68.60 2.03 40.81 16 20 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 21 H -0.27 -10.02 7.11 99.48 0.71 -9.32 16 22 H -0.27 -10.12 7.11 99.48 0.71 -9.42 16 23 C -0.20 -10.20 9.74 22.49 0.22 -9.98 16 24 C -0.13 -5.84 9.92 22.11 0.22 -5.62 16 25 H 0.07 1.19 7.96 -2.38 -0.02 1.17 16 26 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.02 0.36 8.07 -2.39 -0.02 0.34 16 28 H 0.34 8.21 8.09 -89.70 -0.73 7.49 16 29 H 0.09 1.62 7.85 -2.39 -0.02 1.61 16 30 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 31 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.06 2.08 8.08 -2.39 -0.02 2.06 16 34 H 0.06 1.91 7.49 -2.39 -0.02 1.89 16 35 H 0.11 4.90 5.29 -2.91 -0.02 4.88 16 36 H 0.11 6.05 6.13 -2.91 -0.02 6.04 16 37 H 0.29 13.71 8.30 -92.71 -0.77 12.95 16 38 H 0.11 5.12 8.06 -2.91 -0.02 5.10 16 39 H 0.12 4.87 8.06 -2.91 -0.02 4.85 16 Total: -1.00 -59.82 314.16 2.03 -57.80 By element: Atomic # 1 Polarization: 33.43 SS G_CDS: 0.32 Total: 33.75 kcal Atomic # 6 Polarization: -58.46 SS G_CDS: 3.69 Total: -54.76 kcal Atomic # 7 Polarization: -60.31 SS G_CDS: -3.14 Total: -63.46 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: -0.87 Total: -14.14 kcal Atomic # 14 Polarization: 38.78 SS G_CDS: 2.03 Total: 40.81 kcal Total: -59.82 2.03 -57.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403458178.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.163 kcal (2) G-P(sol) polarization free energy of solvation -59.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds