Wall clock time and date at job start Mon Mar 30 2020 06:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 110.83040 * 2 1 4 4 C 1.54804 * 110.90948 * 236.35225 * 2 1 3 5 5 H 1.09002 * 110.60033 * 339.64821 * 4 2 1 6 6 N 1.46500 * 110.48908 * 102.24335 * 4 2 1 7 7 C 1.39692 * 119.99822 * 201.21685 * 6 4 2 8 8 C 1.39333 * 119.95244 * 359.73286 * 7 6 4 9 9 C 1.38475 * 120.41999 * 179.76181 * 8 7 6 10 10 C 1.37691 * 120.32792 * 0.50742 * 9 8 7 11 11 C 1.40748 * 119.89194 * 359.74673 * 10 9 8 12 12 C 1.41406 * 120.20788 * 179.97438 * 11 10 9 13 13 H 1.08004 * 119.99584 * 24.46306 * 12 11 10 14 14 C 1.39925 * 120.00042 * 204.46119 * 12 11 10 15 15 N 1.30832 * 120.00371 * 17.87313 * 14 12 11 16 16 Si 1.86806 * 119.99892 * 197.87570 * 14 12 11 17 17 H 1.48498 * 109.46990 * 60.00147 * 16 14 12 18 18 H 1.48501 * 109.46807 * 179.97438 * 16 14 12 19 19 H 1.48493 * 109.47115 * 299.99589 * 16 14 12 20 20 C 1.38277 * 119.94494 * 179.97438 * 7 6 4 21 21 C 1.54105 * 104.19086 * 220.92274 * 4 2 1 22 22 O 1.43748 * 107.28829 * 357.96641 * 21 4 2 23 23 C 1.44378 * 106.97829 * 26.51979 * 22 21 4 24 24 H 1.08996 * 110.62085 * 78.43194 * 23 22 21 25 25 C 1.52999 * 110.62034 * 201.28237 * 23 22 21 26 26 H 1.09006 * 109.47063 * 183.64548 * 1 2 3 27 27 H 1.09004 * 109.47546 * 303.64878 * 1 2 3 28 28 H 1.08997 * 109.47110 * 63.64994 * 1 2 3 29 29 H 0.96993 * 119.99961 * 21.50160 * 6 4 2 30 30 H 1.07999 * 119.78478 * 359.97438 * 8 7 6 31 31 H 1.08003 * 119.83580 * 180.25759 * 9 8 7 32 32 H 1.07997 * 120.04993 * 179.72262 * 10 9 8 33 33 H 0.96994 * 120.00411 * 180.02562 * 15 14 12 34 34 H 1.08000 * 120.16728 * 0.02562 * 20 7 6 35 35 H 1.08995 * 109.88010 * 117.39028 * 21 4 2 36 36 H 1.08998 * 109.87994 * 238.54723 * 21 4 2 37 37 H 1.08997 * 109.47503 * 58.53998 * 25 23 22 38 38 H 1.09002 * 109.47414 * 178.54587 * 25 23 22 39 39 H 1.09001 * 109.46461 * 298.54129 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9176 1.0188 0.0000 4 6 2.0825 -0.8013 -1.2038 5 1 1.3257 -1.4843 -1.5896 6 7 2.5373 0.1073 -2.2592 7 6 2.6533 -0.3514 -3.5736 8 6 2.3415 -1.6747 -3.8786 9 6 2.4483 -2.1383 -5.1791 10 6 2.8742 -1.2986 -6.1838 11 6 3.1978 0.0392 -5.8898 12 6 3.6364 0.9072 -6.9164 13 1 3.3643 0.7103 -7.9429 14 6 4.4228 2.0212 -6.6023 15 7 5.0415 2.0816 -5.4511 16 14 4.5891 3.4222 -7.8266 17 1 3.2486 3.9968 -8.1064 18 1 5.4692 4.4745 -7.2580 19 1 5.1811 2.9095 -9.0882 20 6 3.0823 0.5072 -4.5690 21 6 3.2718 -1.5882 -0.6200 22 8 3.3941 -1.2143 0.7626 23 6 2.0831 -0.8022 1.2054 24 1 1.4562 -1.6704 1.4088 25 6 2.1882 0.0870 2.4460 26 1 -0.3633 -1.0256 0.0653 27 1 -0.3634 0.5694 0.8555 28 1 -0.3633 0.4561 -0.9209 29 1 2.7619 1.0261 -2.0446 30 1 2.0111 -2.3420 -3.0964 31 1 2.2002 -3.1647 -5.4057 32 1 2.9602 -1.6661 -7.1957 33 1 5.5863 2.8539 -5.2332 34 1 3.3284 1.5320 -4.3329 35 1 3.0826 -2.6587 -0.6990 36 1 4.1855 -1.3307 -1.1557 37 1 2.7971 0.9612 2.2159 38 1 1.1914 0.4079 2.7486 39 1 2.6510 -0.4748 3.2574 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405548874.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:48 Heat of formation + Delta-G solvation = -51.128031 kcal Electronic energy + Delta-G solvation = -19522.931275 eV Core-core repulsion = 16621.778047 eV Total energy + Delta-G solvation = -2901.153227 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.01768 -39.34796 -36.43701 -35.17396 -34.25054 -31.83788 -31.35908 -29.55126 -27.94439 -27.09955 -25.38336 -23.20697 -22.76108 -21.41931 -21.33236 -19.06953 -17.67061 -17.49373 -16.88696 -16.62303 -16.39755 -16.16507 -15.35949 -14.92015 -14.57241 -14.32794 -14.16202 -14.01080 -13.82640 -13.50726 -13.19364 -12.98487 -12.78538 -12.74790 -12.59342 -12.44906 -12.33937 -12.07686 -11.82991 -11.63817 -11.43829 -11.31042 -11.09751 -10.76139 -10.38646 -9.26031 -8.62842 -7.94597 -6.32950 1.08592 1.32185 1.37972 1.49179 1.58792 2.22400 2.65052 2.80296 2.93719 3.47437 3.72001 3.84825 3.96069 4.05603 4.23033 4.43285 4.46562 4.53289 4.55181 4.67231 4.74503 4.83468 4.89498 4.97518 4.99772 5.05314 5.08905 5.19080 5.28038 5.31154 5.33337 5.45240 5.57692 5.92441 5.94700 6.09851 6.20579 6.25637 6.57092 6.92341 7.00566 7.05212 7.21878 8.37359 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.025541 B = 0.004909 C = 0.004496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.005990 B = 5702.433415 C = 6225.783963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.121 4.121 3 H 0.082 0.918 4 C 0.132 3.868 5 H 0.092 0.908 6 N -0.742 5.742 7 C 0.220 3.780 8 C -0.301 4.301 9 C -0.062 4.062 10 C -0.284 4.284 11 C 0.109 3.891 12 C -0.506 4.506 13 H 0.072 0.928 14 C 0.038 3.962 15 N -0.823 5.823 16 Si 0.979 3.021 17 H -0.261 1.261 18 H -0.268 1.268 19 H -0.260 1.260 20 C -0.259 4.259 21 C 0.034 3.966 22 O -0.396 6.396 23 C 0.072 3.928 24 H 0.086 0.914 25 C -0.142 4.142 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.050 0.950 29 H 0.391 0.609 30 H 0.114 0.886 31 H 0.119 0.881 32 H 0.090 0.910 33 H 0.285 0.715 34 H 0.099 0.901 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.053 0.947 38 H 0.094 0.906 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.219 -1.745 12.844 14.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.140 4.140 3 H 0.101 0.899 4 C 0.025 3.975 5 H 0.110 0.890 6 N -0.374 5.374 7 C 0.120 3.880 8 C -0.323 4.323 9 C -0.080 4.080 10 C -0.305 4.305 11 C 0.106 3.894 12 C -0.535 4.535 13 H 0.090 0.910 14 C -0.176 4.176 15 N -0.449 5.449 16 Si 0.800 3.200 17 H -0.186 1.186 18 H -0.192 1.192 19 H -0.184 1.184 20 C -0.283 4.283 21 C -0.045 4.045 22 O -0.316 6.316 23 C 0.015 3.985 24 H 0.104 0.896 25 C -0.199 4.199 26 H 0.087 0.913 27 H 0.099 0.901 28 H 0.069 0.931 29 H 0.225 0.775 30 H 0.132 0.868 31 H 0.137 0.863 32 H 0.108 0.892 33 H 0.095 0.905 34 H 0.117 0.883 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.113 0.887 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.929 -1.781 13.213 15.025 hybrid contribution 0.521 0.872 -0.939 1.383 sum -6.408 -0.909 12.273 13.876 Atomic orbital electron populations 1.21688 0.91750 1.03094 1.02639 1.22972 0.98238 0.99724 0.93072 0.89947 1.22268 0.94944 0.92329 0.87959 0.89010 1.44554 1.75867 1.12976 1.04003 1.17741 0.93080 0.92999 0.84200 1.20221 1.20350 0.94833 0.96909 1.20656 0.96583 0.98162 0.92646 1.21029 1.16500 0.94639 0.98344 1.17705 0.87391 0.91480 0.92810 1.19799 1.29951 1.08775 0.94999 0.90964 1.26705 0.92455 1.00731 0.97755 1.69917 1.21690 1.29396 1.23899 0.85314 0.79192 0.76907 0.78631 1.18555 1.19234 1.18425 1.20661 1.15100 0.99193 0.93362 1.23729 0.99619 0.99034 0.82084 1.88860 1.30971 1.86553 1.25180 1.23395 0.83709 0.96929 0.94508 0.89576 1.21791 1.03699 0.98898 0.95495 0.91281 0.90111 0.93133 0.77450 0.86848 0.86293 0.89212 0.90465 0.88323 0.91174 0.91813 0.92767 0.88698 0.91479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 9.19 71.98 0.66 -1.77 16 2 C -0.12 -2.76 2.87 -9.49 -0.03 -2.79 16 3 H 0.08 2.00 7.66 -2.38 -0.02 1.98 16 4 C 0.13 3.88 2.57 45.98 0.12 4.00 16 5 H 0.09 2.67 6.33 -2.39 -0.02 2.65 16 6 N -0.74 -27.78 5.22 -314.45 -1.64 -29.42 16 7 C 0.22 10.17 6.64 38.16 0.25 10.43 16 8 C -0.30 -13.09 9.23 22.59 0.21 -12.88 16 9 C -0.06 -2.79 10.01 22.20 0.22 -2.56 16 10 C -0.28 -14.65 9.79 22.75 0.22 -14.43 16 11 C 0.11 6.15 5.57 -21.31 -0.12 6.03 16 12 C -0.51 -28.44 9.05 23.46 0.21 -28.23 16 13 H 0.07 3.93 7.91 -2.91 -0.02 3.91 16 14 C 0.04 2.00 5.14 85.25 0.44 2.44 16 15 N -0.82 -44.44 10.96 21.82 0.24 -44.20 16 16 Si 0.98 39.40 29.60 68.60 2.03 41.43 16 17 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 18 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 19 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 20 C -0.26 -13.95 8.53 22.86 0.20 -13.75 16 21 C 0.03 1.04 7.50 72.36 0.54 1.58 16 22 O -0.40 -11.66 11.22 -148.98 -1.67 -13.34 16 23 C 0.07 1.54 3.42 31.28 0.11 1.65 16 24 H 0.09 1.57 8.01 -2.39 -0.02 1.55 16 25 C -0.14 -2.40 9.67 71.98 0.70 -1.71 16 26 H 0.07 1.10 8.09 -2.38 -0.02 1.08 16 27 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 28 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.39 14.47 8.36 -92.71 -0.78 13.70 16 30 H 0.11 4.24 6.27 -2.91 -0.02 4.22 16 31 H 0.12 4.48 8.06 -2.91 -0.02 4.46 16 32 H 0.09 4.42 8.06 -2.91 -0.02 4.40 16 33 H 0.28 13.97 8.30 -92.71 -0.77 13.20 16 34 H 0.10 5.57 6.16 -2.91 -0.02 5.55 16 35 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.06 2.32 7.93 -2.39 -0.02 2.30 16 37 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.09 1.12 8.14 -2.39 -0.02 1.11 16 39 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -62.70 317.48 2.95 -59.75 By element: Atomic # 1 Polarization: 37.51 SS G_CDS: 0.26 Total: 37.77 kcal Atomic # 6 Polarization: -55.73 SS G_CDS: 3.73 Total: -52.00 kcal Atomic # 7 Polarization: -72.22 SS G_CDS: -1.40 Total: -73.62 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: -1.67 Total: -13.34 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 2.03 Total: 41.43 kcal Total: -62.70 2.95 -59.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405548874.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.623 kcal (2) G-P(sol) polarization free energy of solvation -62.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds