Wall clock time and date at job start Mon Mar 30 2020 06:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 110.41865 * 2 1 4 4 O 1.44428 * 110.37384 * 237.68990 * 2 1 3 5 5 C 1.44427 * 105.27590 * 200.65843 * 4 2 1 6 6 C 1.54478 * 104.80335 * 40.50937 * 5 4 2 7 7 H 1.09000 * 110.62693 * 94.72262 * 6 5 4 8 8 N 1.46504 * 110.51328 * 217.37903 * 6 5 4 9 9 C 1.39684 * 119.99509 * 269.64572 * 8 6 5 10 10 C 1.39338 * 119.95519 * 359.97258 * 9 8 6 11 11 C 1.38478 * 120.42454 * 179.97438 * 10 9 8 12 12 C 1.37696 * 120.32204 * 359.76698 * 11 10 9 13 13 C 1.40751 * 119.89421 * 0.51396 * 12 11 10 14 14 C 1.41399 * 120.20639 * 179.74269 * 13 12 11 15 15 H 1.07999 * 120.00055 * 155.37157 * 14 13 12 16 16 C 1.39930 * 120.00199 * 335.36940 * 14 13 12 17 17 N 1.30833 * 119.99979 * 342.27861 * 16 14 13 18 18 Si 1.86802 * 120.00311 * 162.27481 * 16 14 13 19 19 H 1.48497 * 109.47587 * 180.02562 * 18 16 14 20 20 H 1.48499 * 109.47131 * 300.00475 * 18 16 14 21 21 H 1.48502 * 109.46945 * 60.00215 * 18 16 14 22 22 C 1.38281 * 119.95015 * 179.97438 * 9 8 6 23 23 C 1.54481 * 110.37439 * 122.30858 * 2 1 3 24 24 H 1.08998 * 110.62756 * 261.51885 * 23 2 1 25 25 C 1.53000 * 110.50889 * 24.16539 * 23 2 1 26 26 H 1.08999 * 109.47214 * 297.69292 * 1 2 3 27 27 H 1.08998 * 109.47133 * 57.69320 * 1 2 3 28 28 H 1.08995 * 109.46802 * 177.69072 * 1 2 3 29 29 H 1.09008 * 110.36769 * 281.68260 * 5 4 2 30 30 H 1.09000 * 110.37353 * 159.34121 * 5 4 2 31 31 H 0.97001 * 119.99937 * 89.64282 * 8 6 5 32 32 H 1.07994 * 119.78808 * 0.02827 * 10 9 8 33 33 H 1.07997 * 119.83485 * 180.02562 * 11 10 9 34 34 H 1.08005 * 120.05094 * 180.27563 * 12 11 10 35 35 H 0.96998 * 119.99775 * 180.02562 * 17 16 14 36 36 H 1.08003 * 120.16097 * 0.02562 * 22 9 8 37 37 H 1.08997 * 109.47629 * 174.64567 * 25 23 2 38 38 H 1.09000 * 109.47344 * 294.64456 * 25 23 2 39 39 H 1.08997 * 109.47268 * 54.64225 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 8 2.0328 -0.7237 -1.1443 5 6 3.3874 -1.0872 -0.7995 6 6 3.3178 -1.5057 0.6859 7 1 3.1965 -2.5852 0.7754 8 7 4.5182 -1.0642 1.4005 9 6 5.6326 -1.9028 1.4782 10 6 5.6013 -3.1591 0.8763 11 6 6.7007 -3.9981 0.9469 12 6 7.8395 -3.5975 1.6092 13 6 7.8837 -2.3337 2.2271 14 6 9.0478 -1.9178 2.9137 15 1 9.2542 -0.8651 3.0382 16 6 9.9324 -2.8702 3.4318 17 7 9.5389 -4.1070 3.5968 18 14 11.6752 -2.3759 3.8877 19 1 12.4051 -3.5593 4.4092 20 1 12.3728 -1.8553 2.6846 21 1 11.6333 -1.3202 4.9312 22 6 6.7653 -1.4850 2.1524 23 6 2.0678 -0.7740 1.2240 24 1 2.3425 -0.0857 2.0232 25 6 1.0288 -1.7817 1.7198 26 1 -0.3633 0.4776 0.9099 27 1 -0.3633 0.5492 -0.8686 28 1 -0.3633 -1.0268 -0.0414 29 1 4.0525 -0.2323 -0.9221 30 1 3.7242 -1.9223 -1.4136 31 1 4.5391 -0.1897 1.8195 32 1 4.7142 -3.4802 0.3507 33 1 6.6662 -4.9697 0.4766 34 1 8.6960 -4.2536 1.6578 35 1 10.1520 -4.7671 3.9563 36 1 6.7906 -0.5116 2.6197 37 1 1.4590 -2.3829 2.5208 38 1 0.1554 -1.2483 2.0951 39 1 0.7316 -2.4318 0.8970 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405548879.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:52 Heat of formation + Delta-G solvation = -31.813413 kcal Electronic energy + Delta-G solvation = -19345.393779 eV Core-core repulsion = 16445.078097 eV Total energy + Delta-G solvation = -2900.315683 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.96565 -37.62334 -34.94910 -33.64639 -32.95545 -30.42683 -29.72470 -27.92880 -26.32722 -25.27106 -24.91291 -21.95894 -20.86612 -20.07793 -19.64215 -17.45352 -16.49686 -15.89210 -15.40142 -15.24716 -14.95317 -14.62586 -14.31681 -13.58759 -13.14060 -12.97425 -12.58669 -12.53917 -12.44171 -12.11841 -12.00349 -11.80967 -11.50333 -11.44853 -11.06871 -10.90256 -10.79595 -10.65187 -10.52100 -10.35723 -9.77709 -9.70660 -9.32168 -9.20308 -8.74957 -7.40160 -6.71932 -6.25591 -4.32113 2.86393 3.08835 3.11684 3.21381 3.34929 3.80944 3.96717 4.27513 4.52946 4.65880 4.73054 4.89542 5.17471 5.21120 5.33226 5.43751 5.52346 5.57014 5.76287 5.80549 5.85600 5.92976 5.97399 6.06842 6.10437 6.21090 6.31555 6.53507 6.82675 7.02359 7.07185 7.10944 7.32860 7.36967 7.76413 7.89338 8.13044 8.23451 8.48801 8.58150 8.77227 8.98756 9.10362 10.24174 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.044777 B = 0.003957 C = 0.003891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.176027 B = 7074.057541 C = 7195.073988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.074 3.926 3 H 0.065 0.935 4 O -0.375 6.375 5 C 0.029 3.971 6 C 0.135 3.865 7 H 0.092 0.908 8 N -0.752 5.752 9 C 0.222 3.778 10 C -0.303 4.303 11 C -0.074 4.074 12 C -0.198 4.198 13 C 0.142 3.858 14 C -0.465 4.465 15 H 0.075 0.925 16 C 0.078 3.922 17 N -0.791 5.791 18 Si 0.906 3.094 19 H -0.279 1.279 20 H -0.264 1.264 21 H -0.266 1.266 22 C -0.288 4.288 23 C -0.131 4.131 24 H 0.086 0.914 25 C -0.140 4.140 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.093 0.907 31 H 0.388 0.612 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.114 0.886 35 H 0.280 0.720 36 H 0.088 0.912 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.163 4.974 -3.554 13.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.016 3.984 3 H 0.083 0.917 4 O -0.294 6.294 5 C -0.049 4.049 6 C 0.028 3.972 7 H 0.110 0.890 8 N -0.385 5.385 9 C 0.124 3.876 10 C -0.326 4.326 11 C -0.093 4.093 12 C -0.219 4.219 13 C 0.139 3.861 14 C -0.495 4.495 15 H 0.093 0.907 16 C -0.140 4.140 17 N -0.417 5.417 18 Si 0.731 3.269 19 H -0.204 1.204 20 H -0.189 1.189 21 H -0.191 1.191 22 C -0.312 4.312 23 C -0.151 4.151 24 H 0.104 0.896 25 C -0.197 4.197 26 H 0.087 0.913 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.111 0.889 31 H 0.222 0.778 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.132 0.868 35 H 0.090 0.910 36 H 0.107 0.893 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.307 4.562 -3.750 13.651 hybrid contribution 0.999 0.518 0.636 1.292 sum -11.309 5.081 -3.115 12.783 Atomic orbital electron populations 1.21871 0.93493 1.03082 1.01937 1.22957 0.95093 0.95143 0.85239 0.91694 1.89109 1.27663 1.74555 1.38045 1.24060 0.83599 1.00493 0.96777 1.22074 0.84710 0.99903 0.90558 0.88964 1.44461 1.12676 1.19045 1.62338 1.17471 0.85907 0.89728 0.94451 1.19875 1.00181 0.96263 1.16234 1.20442 0.93857 0.96786 0.98247 1.21185 0.98146 0.99131 1.03398 1.17326 0.90543 0.90725 0.87521 1.19523 1.04463 0.94076 1.31433 0.90675 1.25892 1.00122 0.94440 0.93533 1.69852 1.36115 1.03365 1.32334 0.86407 0.81932 0.78945 0.79623 1.20390 1.18858 1.19094 1.20391 0.94206 1.02450 1.14167 1.22780 0.95863 0.98281 0.98137 0.89586 1.21830 0.98030 0.98613 1.01217 0.91305 0.92291 0.91297 0.91909 0.88885 0.77814 0.89655 0.89626 0.86774 0.90952 0.89331 0.92246 0.92263 0.92074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 8.42 37.16 0.31 -1.05 16 2 C 0.07 0.86 3.84 -25.95 -0.10 0.76 16 3 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 4 O -0.37 -5.38 11.34 -35.23 -0.40 -5.77 16 5 C 0.03 0.43 7.35 37.93 0.28 0.71 16 6 C 0.14 2.03 2.83 -66.36 -0.19 1.84 16 7 H 0.09 1.50 5.98 -51.93 -0.31 1.19 16 8 N -0.75 -13.14 5.26 -50.70 -0.27 -13.41 16 9 C 0.22 4.92 6.64 -83.86 -0.56 4.36 16 10 C -0.30 -6.82 9.23 -39.08 -0.36 -7.18 16 11 C -0.07 -1.78 10.02 -39.69 -0.40 -2.18 16 12 C -0.20 -5.26 8.69 -38.83 -0.34 -5.60 16 13 C 0.14 3.84 5.57 -106.86 -0.60 3.25 16 14 C -0.47 -12.53 9.05 -37.75 -0.34 -12.87 16 15 H 0.08 1.94 7.91 -52.49 -0.41 1.53 16 16 C 0.08 1.98 5.14 -17.34 -0.09 1.90 16 17 N -0.79 -20.75 10.96 55.55 0.61 -20.14 16 18 Si 0.91 18.84 29.59 -169.99 -5.03 13.81 16 19 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 20 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 21 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 22 C -0.29 -7.12 9.63 -38.68 -0.37 -7.49 16 23 C -0.13 -1.58 3.39 -89.05 -0.30 -1.88 16 24 H 0.09 0.99 7.70 -51.93 -0.40 0.59 16 25 C -0.14 -1.50 7.74 37.16 0.29 -1.22 16 26 H 0.07 0.52 7.78 -51.93 -0.40 0.12 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.64 6.58 -51.93 -0.34 0.30 16 29 H 0.06 0.95 8.06 -51.92 -0.42 0.53 16 30 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 31 H 0.39 6.19 8.39 -40.82 -0.34 5.85 16 32 H 0.09 1.74 6.18 -52.49 -0.32 1.41 16 33 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 34 H 0.11 3.13 6.16 -52.48 -0.32 2.80 16 35 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 36 H 0.09 2.08 8.06 -52.48 -0.42 1.66 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.52 7.05 -51.93 -0.37 0.16 16 39 H 0.06 0.66 7.45 -51.93 -0.39 0.28 16 LS Contribution 312.22 15.07 4.71 4.71 Total: -1.00 -28.14 312.22 -8.85 -36.99 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -5.70 Total: 10.47 kcal Atomic # 6 Polarization: -23.89 SS G_CDS: -2.76 Total: -26.65 kcal Atomic # 7 Polarization: -33.89 SS G_CDS: 0.34 Total: -33.55 kcal Atomic # 8 Polarization: -5.38 SS G_CDS: -0.40 Total: -5.77 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.81 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.14 -8.85 -36.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405548879.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.176 kcal (2) G-P(sol) polarization free energy of solvation -28.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds