Wall clock time and date at job start Mon Mar 30 2020 06:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 110.41865 * 2 1 4 4 O 1.44428 * 110.37384 * 237.68990 * 2 1 3 5 5 C 1.44427 * 105.27590 * 200.65843 * 4 2 1 6 6 C 1.54478 * 104.80335 * 40.50937 * 5 4 2 7 7 H 1.09000 * 110.62693 * 94.72262 * 6 5 4 8 8 N 1.46504 * 110.51328 * 217.37903 * 6 5 4 9 9 C 1.39684 * 119.99509 * 269.64572 * 8 6 5 10 10 C 1.39338 * 119.95519 * 359.97258 * 9 8 6 11 11 C 1.38478 * 120.42454 * 179.97438 * 10 9 8 12 12 C 1.37696 * 120.32204 * 359.76698 * 11 10 9 13 13 C 1.40751 * 119.89421 * 0.51396 * 12 11 10 14 14 C 1.41399 * 120.20639 * 179.74269 * 13 12 11 15 15 H 1.07999 * 120.00055 * 155.37157 * 14 13 12 16 16 C 1.39930 * 120.00199 * 335.36940 * 14 13 12 17 17 N 1.30833 * 119.99979 * 342.27861 * 16 14 13 18 18 Si 1.86802 * 120.00311 * 162.27481 * 16 14 13 19 19 H 1.48497 * 109.47587 * 180.02562 * 18 16 14 20 20 H 1.48499 * 109.47131 * 300.00475 * 18 16 14 21 21 H 1.48502 * 109.46945 * 60.00215 * 18 16 14 22 22 C 1.38281 * 119.95015 * 179.97438 * 9 8 6 23 23 C 1.54481 * 110.37439 * 122.30858 * 2 1 3 24 24 H 1.08998 * 110.62756 * 261.51885 * 23 2 1 25 25 C 1.53000 * 110.50889 * 24.16539 * 23 2 1 26 26 H 1.08999 * 109.47214 * 297.69292 * 1 2 3 27 27 H 1.08998 * 109.47133 * 57.69320 * 1 2 3 28 28 H 1.08995 * 109.46802 * 177.69072 * 1 2 3 29 29 H 1.09008 * 110.36769 * 281.68260 * 5 4 2 30 30 H 1.09000 * 110.37353 * 159.34121 * 5 4 2 31 31 H 0.97001 * 119.99937 * 89.64282 * 8 6 5 32 32 H 1.07994 * 119.78808 * 0.02827 * 10 9 8 33 33 H 1.07997 * 119.83485 * 180.02562 * 11 10 9 34 34 H 1.08005 * 120.05094 * 180.27563 * 12 11 10 35 35 H 0.96998 * 119.99775 * 180.02562 * 17 16 14 36 36 H 1.08003 * 120.16097 * 0.02562 * 22 9 8 37 37 H 1.08997 * 109.47629 * 174.64567 * 25 23 2 38 38 H 1.09000 * 109.47344 * 294.64456 * 25 23 2 39 39 H 1.08997 * 109.47268 * 54.64225 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 8 2.0328 -0.7237 -1.1443 5 6 3.3874 -1.0872 -0.7995 6 6 3.3178 -1.5057 0.6859 7 1 3.1965 -2.5852 0.7754 8 7 4.5182 -1.0642 1.4005 9 6 5.6326 -1.9028 1.4782 10 6 5.6013 -3.1591 0.8763 11 6 6.7007 -3.9981 0.9469 12 6 7.8395 -3.5975 1.6092 13 6 7.8837 -2.3337 2.2271 14 6 9.0478 -1.9178 2.9137 15 1 9.2542 -0.8651 3.0382 16 6 9.9324 -2.8702 3.4318 17 7 9.5389 -4.1070 3.5968 18 14 11.6752 -2.3759 3.8877 19 1 12.4051 -3.5593 4.4092 20 1 12.3728 -1.8553 2.6846 21 1 11.6333 -1.3202 4.9312 22 6 6.7653 -1.4850 2.1524 23 6 2.0678 -0.7740 1.2240 24 1 2.3425 -0.0857 2.0232 25 6 1.0288 -1.7817 1.7198 26 1 -0.3633 0.4776 0.9099 27 1 -0.3633 0.5492 -0.8686 28 1 -0.3633 -1.0268 -0.0414 29 1 4.0525 -0.2323 -0.9221 30 1 3.7242 -1.9223 -1.4136 31 1 4.5391 -0.1897 1.8195 32 1 4.7142 -3.4802 0.3507 33 1 6.6662 -4.9697 0.4766 34 1 8.6960 -4.2536 1.6578 35 1 10.1520 -4.7671 3.9563 36 1 6.7906 -0.5116 2.6197 37 1 1.4590 -2.3829 2.5208 38 1 0.1554 -1.2483 2.0951 39 1 0.7316 -2.4318 0.8970 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405548879.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:52 Heat of formation + Delta-G solvation = -47.717988 kcal Electronic energy + Delta-G solvation = -19346.083453 eV Core-core repulsion = 16445.078097 eV Total energy + Delta-G solvation = -2901.005357 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.09637 -39.38094 -36.55920 -35.04090 -34.34021 -31.83653 -31.49659 -29.20303 -27.72909 -27.13047 -25.91302 -23.37171 -22.62023 -21.69131 -20.75028 -19.23532 -17.69047 -17.47507 -16.94450 -16.44149 -16.35652 -16.09007 -15.87689 -14.86772 -14.61637 -14.51686 -13.98256 -13.87828 -13.76721 -13.37545 -13.23421 -13.10770 -12.83471 -12.75208 -12.61009 -12.52073 -12.18001 -12.00711 -11.75821 -11.60192 -11.54217 -11.19718 -11.05536 -10.78738 -10.41850 -9.34938 -8.61302 -7.98572 -6.33122 1.04835 1.33097 1.39284 1.50594 1.59962 2.22427 2.56600 2.79678 3.07866 3.48407 3.71281 3.86289 3.92227 4.10524 4.17771 4.42091 4.48266 4.51741 4.63072 4.66980 4.72449 4.82610 4.91455 4.96203 4.98649 5.13582 5.15756 5.16362 5.19749 5.26612 5.38615 5.40726 5.57066 5.81811 5.95933 6.01232 6.19421 6.30206 6.60951 6.87455 6.99812 7.01973 7.22301 8.36862 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.044777 B = 0.003957 C = 0.003891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.176027 B = 7074.057541 C = 7195.073988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.069 3.931 3 H 0.072 0.928 4 O -0.386 6.386 5 C 0.034 3.966 6 C 0.131 3.869 7 H 0.082 0.918 8 N -0.740 5.740 9 C 0.234 3.766 10 C -0.304 4.304 11 C -0.075 4.075 12 C -0.231 4.231 13 C 0.113 3.887 14 C -0.504 4.504 15 H 0.073 0.927 16 C 0.037 3.963 17 N -0.823 5.823 18 Si 0.982 3.018 19 H -0.267 1.267 20 H -0.261 1.261 21 H -0.259 1.259 22 C -0.310 4.310 23 C -0.124 4.124 24 H 0.094 0.906 25 C -0.137 4.137 26 H 0.090 0.910 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.089 0.911 31 H 0.397 0.603 32 H 0.110 0.890 33 H 0.107 0.893 34 H 0.096 0.904 35 H 0.287 0.713 36 H 0.092 0.908 37 H 0.048 0.952 38 H 0.083 0.917 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.574 5.819 -3.530 15.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.012 3.988 3 H 0.090 0.910 4 O -0.306 6.306 5 C -0.045 4.045 6 C 0.024 3.976 7 H 0.100 0.900 8 N -0.373 5.373 9 C 0.134 3.866 10 C -0.327 4.327 11 C -0.094 4.094 12 C -0.252 4.252 13 C 0.110 3.890 14 C -0.533 4.533 15 H 0.091 0.909 16 C -0.178 4.178 17 N -0.449 5.449 18 Si 0.802 3.198 19 H -0.191 1.191 20 H -0.186 1.186 21 H -0.183 1.183 22 C -0.334 4.334 23 C -0.144 4.144 24 H 0.113 0.887 25 C -0.194 4.194 26 H 0.109 0.891 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.107 0.893 31 H 0.232 0.768 32 H 0.128 0.872 33 H 0.125 0.875 34 H 0.114 0.886 35 H 0.098 0.902 36 H 0.110 0.890 37 H 0.068 0.932 38 H 0.102 0.898 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.773 5.429 -3.737 15.268 hybrid contribution 1.255 0.280 0.568 1.405 sum -12.518 5.709 -3.169 14.119 Atomic orbital electron populations 1.21895 0.91444 1.03456 1.03284 1.23186 0.96728 0.94996 0.83928 0.91025 1.89110 1.27123 1.74977 1.39340 1.23907 0.84126 1.00165 0.96299 1.22229 0.84796 0.99736 0.90857 0.89971 1.44472 1.12160 1.18761 1.61877 1.17499 0.86417 0.90040 0.92693 1.20163 1.00515 0.96122 1.15863 1.20724 0.93415 0.97894 0.97354 1.21115 0.98838 0.99396 1.05832 1.17689 0.91600 0.91559 0.88110 1.19796 1.05956 0.94463 1.33120 0.90891 1.26759 1.04073 0.94128 0.92884 1.69912 1.37746 1.04439 1.32788 0.85272 0.76189 0.78950 0.79372 1.19130 1.18579 1.18341 1.20516 0.94803 1.02598 1.15468 1.22767 0.94585 0.98454 0.98566 0.88731 1.21828 0.98411 0.98360 1.00832 0.89140 0.91912 0.91317 0.92419 0.89288 0.76755 0.87162 0.87492 0.88622 0.90242 0.88981 0.93243 0.89819 0.92214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 8.42 71.98 0.61 -1.58 16 2 C 0.07 1.41 3.84 31.10 0.12 1.53 16 3 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 4 O -0.39 -10.30 11.34 -148.98 -1.69 -11.99 16 5 C 0.03 0.94 7.35 72.48 0.53 1.47 16 6 C 0.13 3.67 2.83 46.01 0.13 3.80 16 7 H 0.08 2.52 5.98 -2.39 -0.01 2.51 16 8 N -0.74 -24.87 5.26 -314.32 -1.65 -26.52 16 9 C 0.23 10.26 6.64 38.16 0.25 10.52 16 10 C -0.30 -13.45 9.23 22.59 0.21 -13.24 16 11 C -0.07 -3.61 10.02 22.20 0.22 -3.39 16 12 C -0.23 -12.68 8.69 22.76 0.20 -12.48 16 13 C 0.11 6.35 5.57 -21.31 -0.12 6.23 16 14 C -0.50 -28.08 9.05 23.46 0.21 -27.87 16 15 H 0.07 3.92 7.91 -2.91 -0.02 3.89 16 16 C 0.04 1.90 5.14 85.25 0.44 2.34 16 17 N -0.82 -44.32 10.96 21.82 0.24 -44.08 16 18 Si 0.98 39.04 29.59 68.60 2.03 41.07 16 19 H -0.27 -9.99 7.11 99.48 0.71 -9.29 16 20 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 21 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 22 C -0.31 -15.58 9.63 22.86 0.22 -15.36 16 23 C -0.12 -2.67 3.39 -9.78 -0.03 -2.70 16 24 H 0.09 1.90 7.70 -2.39 -0.02 1.88 16 25 C -0.14 -2.57 7.74 71.98 0.56 -2.01 16 26 H 0.09 1.00 7.78 -2.39 -0.02 0.98 16 27 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.07 1.06 6.58 -2.39 -0.02 1.05 16 29 H 0.06 1.67 8.06 -2.38 -0.02 1.65 16 30 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 31 H 0.40 12.05 8.39 -92.71 -0.78 11.27 16 32 H 0.11 4.29 6.18 -2.91 -0.02 4.27 16 33 H 0.11 4.56 8.06 -2.91 -0.02 4.54 16 34 H 0.10 5.49 6.16 -2.91 -0.02 5.48 16 35 H 0.29 13.96 8.30 -92.71 -0.77 13.19 16 36 H 0.09 4.41 8.06 -2.91 -0.02 4.39 16 37 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.08 1.17 7.05 -2.39 -0.02 1.15 16 39 H 0.06 1.14 7.45 -2.39 -0.02 1.12 16 Total: -1.00 -61.81 312.22 2.74 -59.07 By element: Atomic # 1 Polarization: 34.91 SS G_CDS: 0.27 Total: 35.18 kcal Atomic # 6 Polarization: -56.28 SS G_CDS: 3.55 Total: -52.73 kcal Atomic # 7 Polarization: -69.18 SS G_CDS: -1.41 Total: -70.60 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: -1.69 Total: -11.99 kcal Atomic # 14 Polarization: 39.04 SS G_CDS: 2.03 Total: 41.07 kcal Total: -61.81 2.74 -59.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405548879.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.350 kcal (2) G-P(sol) polarization free energy of solvation -61.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds