Wall clock time and date at job start Mon Mar 30 2020 06:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.45504 * 2 1 4 4 C 1.54504 * 110.51444 * 237.39535 * 2 1 3 5 5 H 1.08998 * 110.62889 * 0.05203 * 4 2 1 6 6 N 1.46496 * 110.51696 * 122.70981 * 4 2 1 7 7 C 1.38854 * 120.00239 * 201.09970 * 6 4 2 8 8 C 1.39562 * 119.84446 * 359.71802 * 7 6 4 9 9 C 1.36339 * 120.16562 * 179.76715 * 8 7 6 10 10 C 1.40890 * 119.83248 * 0.52739 * 9 8 7 11 11 C 1.41135 * 120.15469 * 179.74249 * 10 9 8 12 12 H 1.08003 * 120.00232 * 204.59736 * 11 10 9 13 13 C 1.39868 * 120.00049 * 24.59716 * 11 10 9 14 14 N 1.30904 * 120.00112 * 17.96492 * 13 11 10 15 15 Si 1.86795 * 120.00041 * 197.97139 * 13 11 10 16 16 H 1.48497 * 109.47428 * 89.99556 * 15 13 11 17 17 H 1.48503 * 109.47388 * 210.00040 * 15 13 11 18 18 H 1.48503 * 109.47239 * 329.99731 * 15 13 11 19 19 C 1.40882 * 119.69016 * 359.73062 * 10 9 8 20 20 C 1.36345 * 119.83638 * 359.97438 * 19 10 9 21 21 C 1.54485 * 104.06173 * 241.35451 * 4 2 1 22 22 O 1.44433 * 104.80093 * 336.01790 * 21 4 2 23 23 C 1.44420 * 105.27306 * 40.51562 * 22 21 4 24 24 H 1.08998 * 110.37811 * 78.31768 * 23 22 21 25 25 C 1.52999 * 110.37016 * 200.65641 * 23 22 21 26 26 H 1.09007 * 109.46609 * 182.61020 * 1 2 3 27 27 H 1.08994 * 109.47177 * 302.60580 * 1 2 3 28 28 H 1.08995 * 109.47428 * 62.61114 * 1 2 3 29 29 H 0.97006 * 119.99916 * 21.09083 * 6 4 2 30 30 H 1.08001 * 119.91828 * 0.02562 * 8 7 6 31 31 H 1.07992 * 120.08500 * 180.23546 * 9 8 7 32 32 H 0.96990 * 120.00197 * 180.02562 * 14 13 11 33 33 H 1.07995 * 120.08235 * 179.97438 * 19 10 9 34 34 H 1.08000 * 119.91920 * 180.02562 * 20 19 10 35 35 H 1.08995 * 110.37161 * 217.19275 * 21 4 2 36 36 H 1.08993 * 110.47220 * 94.89522 * 21 4 2 37 37 H 1.09000 * 109.47261 * 58.54853 * 25 23 22 38 38 H 1.09000 * 109.47454 * 178.54692 * 25 23 22 39 39 H 1.09000 * 109.46983 * 298.54662 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9109 1.0213 0.0000 4 6 2.0714 -0.7797 -1.2190 5 1 1.2506 -1.1654 -1.8236 6 7 2.9458 0.0737 -2.0273 7 6 3.1882 -0.2427 -3.3574 8 6 2.6020 -1.3777 -3.9194 9 6 2.8318 -1.6918 -5.2260 10 6 3.6724 -0.8735 -6.0063 11 6 3.9193 -1.1953 -7.3581 12 1 4.8215 -0.8482 -7.8398 13 6 2.9956 -1.9639 -8.0739 14 7 1.7690 -2.0901 -7.6346 15 14 3.5124 -2.8102 -9.6569 16 1 4.0273 -4.1682 -9.3469 17 1 2.3422 -2.9198 -10.5646 18 1 4.5787 -2.0156 -10.3179 19 6 4.2651 0.2677 -5.4308 20 6 4.0215 0.5730 -4.1245 21 6 2.8758 -1.9414 -0.5944 22 8 3.2399 -1.4721 0.7221 23 6 2.0713 -0.7827 1.2169 24 1 1.3286 -1.4988 1.5683 25 6 2.4575 0.1808 2.3409 26 1 -0.3633 -1.0267 0.0468 27 1 -0.3633 0.5537 0.8657 28 1 -0.3634 0.4727 -0.9124 29 1 3.3553 0.8599 -1.6333 30 1 1.9614 -2.0065 -3.3189 31 1 2.3745 -2.5683 -5.6606 32 1 1.1286 -2.6233 -8.1308 33 1 4.9108 0.8992 -6.0229 34 1 4.4749 1.4477 -3.6821 35 1 3.7690 -2.1451 -1.1850 36 1 2.2582 -2.8364 -0.5208 37 1 3.1884 0.8987 1.9690 38 1 1.5699 0.7115 2.6856 39 1 2.8891 -0.3814 3.1690 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405637714.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:56 Heat of formation + Delta-G solvation = -47.212830 kcal Electronic energy + Delta-G solvation = -19398.415320 eV Core-core repulsion = 16497.431868 eV Total energy + Delta-G solvation = -2900.983452 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.03610 -39.45803 -36.50307 -34.94627 -34.10089 -31.84235 -31.34018 -30.16291 -28.39711 -26.30279 -25.09702 -23.41046 -22.83472 -21.58552 -21.12843 -19.16086 -17.81815 -17.27521 -16.94004 -16.77948 -16.60624 -15.76344 -15.37681 -14.73129 -14.53867 -14.28527 -14.07296 -13.92970 -13.79000 -13.59364 -13.35005 -13.01144 -12.79994 -12.76907 -12.73797 -12.39723 -12.20972 -12.14389 -11.85688 -11.56883 -11.51067 -11.17180 -11.08291 -10.80178 -10.21948 -9.41099 -8.55474 -8.17381 -6.01420 1.09891 1.18164 1.40399 1.52689 1.58609 2.27449 2.80650 2.83178 2.96310 3.52367 3.74200 3.85333 4.02778 4.09383 4.30307 4.43467 4.45507 4.47627 4.50733 4.57817 4.68217 4.78180 4.91852 5.00010 5.03395 5.06900 5.09208 5.17040 5.27302 5.31438 5.33033 5.44883 5.68354 5.77896 5.91655 5.96042 6.18431 6.39063 6.66759 6.86436 7.08226 7.12185 7.28609 8.47911 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.039929 B = 0.004144 C = 0.004043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.073094 B = 6755.322480 C = 6923.607098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.119 4.119 3 H 0.090 0.910 4 C 0.130 3.870 5 H 0.080 0.920 6 N -0.739 5.739 7 C 0.111 3.889 8 C -0.172 4.172 9 C -0.143 4.143 10 C 0.036 3.964 11 C -0.507 4.507 12 H 0.067 0.933 13 C 0.033 3.967 14 N -0.840 5.840 15 Si 0.976 3.024 16 H -0.265 1.265 17 H -0.270 1.270 18 H -0.262 1.262 19 C -0.196 4.196 20 C -0.165 4.165 21 C 0.030 3.970 22 O -0.392 6.392 23 C 0.068 3.932 24 H 0.081 0.919 25 C -0.142 4.142 26 H 0.063 0.937 27 H 0.080 0.920 28 H 0.052 0.948 29 H 0.395 0.605 30 H 0.106 0.894 31 H 0.100 0.900 32 H 0.282 0.718 33 H 0.096 0.904 34 H 0.115 0.885 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.056 0.944 38 H 0.092 0.908 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.559 2.108 15.549 16.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.138 4.138 3 H 0.108 0.892 4 C 0.023 3.977 5 H 0.097 0.903 6 N -0.373 5.373 7 C 0.012 3.988 8 C -0.194 4.194 9 C -0.163 4.163 10 C 0.033 3.967 11 C -0.538 4.538 12 H 0.085 0.915 13 C -0.179 4.179 14 N -0.468 5.468 15 Si 0.798 3.202 16 H -0.190 1.190 17 H -0.195 1.195 18 H -0.186 1.186 19 C -0.217 4.217 20 C -0.187 4.187 21 C -0.048 4.048 22 O -0.311 6.311 23 C 0.011 3.989 24 H 0.099 0.901 25 C -0.199 4.199 26 H 0.082 0.918 27 H 0.099 0.901 28 H 0.071 0.929 29 H 0.230 0.770 30 H 0.124 0.876 31 H 0.118 0.882 32 H 0.093 0.907 33 H 0.114 0.886 34 H 0.133 0.867 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.110 0.890 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.700 1.856 15.640 16.179 hybrid contribution 0.245 -0.179 -1.104 1.145 sum -3.455 1.677 14.537 15.035 Atomic orbital electron populations 1.21768 0.92143 1.02834 1.02816 1.22801 0.97941 1.00242 0.92864 0.89171 1.22180 0.92234 0.91124 0.92120 0.90252 1.43959 1.55321 1.30662 1.07317 1.17438 0.99700 0.96295 0.85358 1.20240 1.04615 0.98787 0.95717 1.20868 1.02350 1.00174 0.92915 1.17818 0.93495 0.91520 0.93826 1.19605 1.05937 1.31633 0.96639 0.91508 1.26587 0.93673 0.95078 1.02516 1.69910 1.03720 1.32921 1.40292 0.85300 0.78811 0.79026 0.77086 1.18976 1.19478 1.18553 1.20746 1.06684 0.98415 0.95808 1.20094 1.03142 1.00981 0.94492 1.23974 1.00078 0.97025 0.83772 1.89116 1.36826 1.74174 1.31019 1.23287 0.87494 0.93846 0.94295 0.90074 1.21811 1.02934 0.98361 0.96813 0.91795 0.90072 0.92867 0.77036 0.87609 0.88247 0.90730 0.88623 0.86668 0.90760 0.90963 0.92518 0.88959 0.91777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 8.97 71.98 0.65 -1.70 16 2 C -0.12 -2.48 3.02 -9.78 -0.03 -2.51 16 3 H 0.09 1.85 7.38 -2.39 -0.02 1.83 16 4 C 0.13 3.65 2.68 46.01 0.12 3.78 16 5 H 0.08 2.38 6.19 -2.39 -0.01 2.37 16 6 N -0.74 -24.39 5.26 -313.76 -1.65 -26.04 16 7 C 0.11 4.70 6.67 38.67 0.26 4.96 16 8 C -0.17 -7.96 9.14 22.15 0.20 -7.76 16 9 C -0.14 -7.71 8.64 22.48 0.19 -7.52 16 10 C 0.04 2.03 5.57 -21.27 -0.12 1.91 16 11 C -0.51 -28.71 9.03 23.38 0.21 -28.49 16 12 H 0.07 3.69 7.91 -2.91 -0.02 3.66 16 13 C 0.03 1.77 5.13 85.23 0.44 2.21 16 14 N -0.84 -45.86 10.96 21.82 0.24 -45.62 16 15 Si 0.98 40.28 29.60 68.60 2.03 42.31 16 16 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 17 H -0.27 -10.57 7.11 99.48 0.71 -9.87 16 18 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 19 C -0.20 -9.93 9.74 22.48 0.22 -9.71 16 20 C -0.16 -7.30 9.82 22.15 0.22 -7.08 16 21 C 0.03 0.86 7.35 72.49 0.53 1.39 16 22 O -0.39 -10.91 11.34 -148.98 -1.69 -12.60 16 23 C 0.07 1.37 3.48 31.10 0.11 1.48 16 24 H 0.08 1.43 7.83 -2.39 -0.02 1.41 16 25 C -0.14 -2.25 9.53 71.98 0.69 -1.56 16 26 H 0.06 1.02 8.08 -2.38 -0.02 1.00 16 27 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.39 11.70 8.31 -92.70 -0.77 10.93 16 30 H 0.11 4.40 6.25 -2.91 -0.02 4.38 16 31 H 0.10 5.64 6.16 -2.91 -0.02 5.62 16 32 H 0.28 14.00 8.30 -92.72 -0.77 13.24 16 33 H 0.10 4.60 8.06 -2.91 -0.02 4.58 16 34 H 0.12 4.35 8.06 -2.91 -0.02 4.33 16 35 H 0.07 2.48 8.06 -2.39 -0.02 2.46 16 36 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.06 0.98 8.13 -2.39 -0.02 0.96 16 38 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -62.51 316.65 2.88 -59.62 By element: Atomic # 1 Polarization: 32.67 SS G_CDS: 0.27 Total: 32.94 kcal Atomic # 6 Polarization: -54.30 SS G_CDS: 3.69 Total: -50.61 kcal Atomic # 7 Polarization: -70.25 SS G_CDS: -1.41 Total: -71.66 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: -1.69 Total: -12.60 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 2.03 Total: 42.31 kcal Total: -62.51 2.88 -59.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405637714.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.411 kcal (2) G-P(sol) polarization free energy of solvation -62.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds