Wall clock time and date at job start Mon Mar 30 2020 06:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 110.33229 * 2 1 4 4 O 1.44421 * 110.37122 * 237.74559 * 2 1 3 5 5 C 1.44421 * 105.27789 * 200.54755 * 4 2 1 6 6 C 1.54483 * 104.80051 * 40.51261 * 5 4 2 7 7 H 1.08996 * 110.50557 * 94.66888 * 6 5 4 8 8 N 1.46498 * 110.50790 * 217.23770 * 6 5 4 9 9 C 1.38853 * 120.00390 * 271.69608 * 8 6 5 10 10 C 1.39565 * 119.84219 * 359.72500 * 9 8 6 11 11 C 1.36345 * 120.16393 * 179.76461 * 10 9 8 12 12 C 1.40888 * 119.83161 * 0.48793 * 11 10 9 13 13 C 1.41137 * 120.15001 * 179.78970 * 12 11 10 14 14 H 1.08001 * 119.99591 * 154.51634 * 13 12 11 15 15 C 1.39865 * 120.00364 * 334.50907 * 13 12 11 16 16 N 1.30910 * 119.99839 * 343.06331 * 15 13 12 17 17 Si 1.86796 * 120.00288 * 163.06633 * 15 13 12 18 18 H 1.48498 * 109.47216 * 59.99826 * 17 15 13 19 19 H 1.48498 * 109.47317 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46921 * 299.99973 * 17 15 13 21 21 C 1.40885 * 119.69136 * 359.76727 * 12 11 10 22 22 C 1.36337 * 119.83477 * 0.02562 * 21 12 11 23 23 C 1.54508 * 104.18370 * 335.95453 * 6 5 4 24 24 H 1.09005 * 110.51003 * 241.42142 * 23 6 5 25 25 C 1.53004 * 110.50887 * 118.71651 * 23 6 5 26 26 H 1.09002 * 109.47294 * 180.80213 * 1 2 3 27 27 H 1.09004 * 109.46969 * 300.79655 * 1 2 3 28 28 H 1.09004 * 109.47175 * 60.79395 * 1 2 3 29 29 H 1.09000 * 110.37474 * 281.68553 * 5 4 2 30 30 H 1.08996 * 110.47058 * 159.39362 * 5 4 2 31 31 H 0.97001 * 120.00074 * 91.70110 * 8 6 5 32 32 H 1.08000 * 119.91814 * 0.02562 * 10 9 8 33 33 H 1.07994 * 120.08416 * 180.23884 * 11 10 9 34 34 H 0.96993 * 119.99746 * 180.02562 * 16 15 13 35 35 H 1.07999 * 120.07846 * 179.97438 * 21 12 11 36 36 H 1.08006 * 119.92013 * 179.97438 * 22 21 12 37 37 H 1.08998 * 109.47150 * 59.99544 * 25 23 6 38 38 H 1.09002 * 109.46668 * 180.02562 * 25 23 6 39 39 H 1.09000 * 109.46664 * 299.99158 * 25 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0221 0.0000 4 8 2.0327 -0.7225 -1.1450 5 6 3.3882 -1.0841 -0.8017 6 6 3.3206 -1.5032 0.6837 7 1 3.2001 -2.5830 0.7706 8 7 4.5226 -1.0632 1.3963 9 6 5.6449 -1.8799 1.4352 10 6 5.6223 -3.1219 0.7991 11 6 6.7222 -3.9271 0.8291 12 6 7.8800 -3.5068 1.5131 13 6 9.0208 -4.3368 1.5522 14 1 10.0000 -3.9026 1.6905 15 6 8.8834 -5.7216 1.4119 16 7 7.7122 -6.2831 1.5761 17 14 10.3708 -6.7700 0.9905 18 1 11.4003 -6.6171 2.0497 19 1 9.9626 -8.1949 0.8997 20 1 10.9323 -6.3314 -0.3125 21 6 7.8937 -2.2540 2.1575 22 6 6.7880 -1.4576 2.1156 23 6 2.0716 -0.7735 1.2266 24 1 2.3487 -0.0836 2.0236 25 6 1.0357 -1.7829 1.7255 26 1 -0.3634 -1.0276 0.0144 27 1 -0.3633 0.5262 0.8828 28 1 -0.3634 0.5015 -0.8970 29 1 4.0519 -0.2283 -0.9246 30 1 3.7275 -1.9179 -1.4162 31 1 4.5345 -0.2012 1.8411 32 1 4.7328 -3.4443 0.2783 33 1 6.7046 -4.8863 0.3332 34 1 7.6170 -7.2434 1.4792 35 1 8.7777 -1.9258 2.6840 36 1 6.7969 -0.4971 2.6095 37 1 1.4696 -2.3841 2.5245 38 1 0.1628 -1.2508 2.1038 39 1 0.7364 -2.4329 0.9033 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405637719.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:00 Heat of formation + Delta-G solvation = -27.940674 kcal Electronic energy + Delta-G solvation = -19392.994891 eV Core-core repulsion = 16492.847143 eV Total energy + Delta-G solvation = -2900.147748 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.93454 -37.75234 -34.96213 -33.61551 -32.86137 -30.37789 -29.48691 -28.42290 -26.96016 -25.11095 -24.19328 -22.02651 -21.03391 -19.97809 -19.61342 -17.23202 -16.61276 -16.35835 -15.30282 -15.13550 -14.95779 -14.89097 -13.88403 -13.57728 -13.13265 -12.84810 -12.56805 -12.55289 -12.41850 -12.06324 -11.94836 -11.85214 -11.55724 -11.53120 -11.02286 -10.87723 -10.83402 -10.72210 -10.50628 -10.45494 -9.72929 -9.69110 -9.29331 -9.21478 -8.57125 -7.51952 -6.64886 -6.42100 -4.06001 2.91438 3.07986 3.13958 3.17141 3.33640 3.85199 4.04820 4.33905 4.54699 4.67167 4.77137 4.91085 5.19200 5.23785 5.34859 5.45803 5.54351 5.59144 5.76924 5.80433 5.85479 5.94557 5.99745 6.07939 6.12269 6.22427 6.25105 6.33705 6.80140 6.90901 6.99171 7.18177 7.33968 7.53136 7.66787 7.81365 8.13280 8.26182 8.46006 8.65522 8.77011 9.04496 9.12845 10.36740 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.038829 B = 0.004129 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.938610 B = 6780.378506 C = 6999.218753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.074 3.926 3 H 0.064 0.936 4 O -0.375 6.375 5 C 0.028 3.972 6 C 0.138 3.862 7 H 0.089 0.911 8 N -0.750 5.750 9 C 0.088 3.912 10 C -0.163 4.163 11 C -0.123 4.123 12 C 0.077 3.923 13 C -0.468 4.468 14 H 0.072 0.928 15 C 0.075 3.925 16 N -0.808 5.808 17 Si 0.904 3.096 18 H -0.268 1.268 19 H -0.280 1.280 20 H -0.266 1.266 21 C -0.187 4.187 22 C -0.156 4.156 23 C -0.129 4.129 24 H 0.085 0.915 25 C -0.140 4.140 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.092 0.908 31 H 0.384 0.616 32 H 0.088 0.912 33 H 0.118 0.882 34 H 0.277 0.723 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.269 8.191 -1.391 14.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.016 3.984 3 H 0.082 0.918 4 O -0.294 6.294 5 C -0.050 4.050 6 C 0.030 3.970 7 H 0.107 0.893 8 N -0.385 5.385 9 C -0.009 4.009 10 C -0.185 4.185 11 C -0.143 4.143 12 C 0.074 3.926 13 C -0.499 4.499 14 H 0.090 0.910 15 C -0.140 4.140 16 N -0.435 5.435 17 Si 0.729 3.271 18 H -0.193 1.193 19 H -0.206 1.206 20 H -0.191 1.191 21 C -0.207 4.207 22 C -0.178 4.178 23 C -0.149 4.149 24 H 0.103 0.897 25 C -0.197 4.197 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.110 0.890 31 H 0.217 0.783 32 H 0.106 0.894 33 H 0.136 0.864 34 H 0.088 0.912 35 H 0.110 0.890 36 H 0.104 0.896 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.583 7.762 -1.681 14.044 hybrid contribution 0.862 -0.193 0.233 0.913 sum -10.721 7.570 -1.447 13.204 Atomic orbital electron populations 1.21881 0.93545 1.03118 1.01930 1.23004 0.95041 0.95097 0.85290 0.91800 1.89106 1.27645 1.74647 1.37971 1.24091 0.83490 1.00477 0.96987 1.22009 0.84792 0.99689 0.90543 0.89332 1.43891 1.11548 1.20877 1.62221 1.17341 0.87275 0.92276 1.03986 1.20115 0.98693 0.94375 1.05306 1.20943 0.93262 0.99516 1.00623 1.17497 0.93303 0.91411 0.90424 1.19348 0.94369 0.90992 1.45206 0.90971 1.25793 0.96779 0.98687 0.92765 1.69838 1.24586 1.12210 1.36914 0.86448 0.82168 0.78418 0.80065 1.19275 1.20563 1.19070 1.20550 0.97246 0.97732 1.05220 1.19800 0.93838 0.99413 1.04790 1.22806 0.95871 0.98191 0.98002 0.89689 1.21830 0.98029 0.98602 1.01245 0.91251 0.91382 0.92252 0.91972 0.88951 0.78260 0.89389 0.86380 0.91243 0.89037 0.89611 0.92236 0.92319 0.92032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 8.47 37.16 0.31 -1.07 16 2 C 0.07 0.86 3.84 -25.78 -0.10 0.76 16 3 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 4 O -0.37 -5.46 11.34 -35.23 -0.40 -5.86 16 5 C 0.03 0.42 7.35 37.94 0.28 0.70 16 6 C 0.14 2.06 2.75 -66.36 -0.18 1.88 16 7 H 0.09 1.47 6.05 -51.93 -0.31 1.16 16 8 N -0.75 -12.65 5.24 -50.52 -0.26 -12.92 16 9 C 0.09 1.87 6.67 -83.69 -0.56 1.31 16 10 C -0.16 -3.77 9.14 -39.77 -0.36 -4.13 16 11 C -0.12 -3.22 8.63 -39.26 -0.34 -3.56 16 12 C 0.08 2.06 5.57 -106.79 -0.59 1.47 16 13 C -0.47 -12.70 9.03 -37.87 -0.34 -13.04 16 14 H 0.07 1.89 7.90 -52.49 -0.41 1.47 16 15 C 0.07 1.93 5.15 -17.34 -0.09 1.84 16 16 N -0.81 -21.43 10.96 55.54 0.61 -20.83 16 17 Si 0.90 19.23 29.59 -169.99 -5.03 14.20 16 18 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 19 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 20 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 21 C -0.19 -4.61 9.74 -39.27 -0.38 -4.99 16 22 C -0.16 -3.46 9.82 -39.77 -0.39 -3.85 16 23 C -0.13 -1.55 3.41 -88.88 -0.30 -1.85 16 24 H 0.08 0.95 7.68 -51.93 -0.40 0.55 16 25 C -0.14 -1.52 7.72 37.16 0.29 -1.23 16 26 H 0.07 0.66 6.40 -51.93 -0.33 0.33 16 27 H 0.07 0.51 7.93 -51.93 -0.41 0.10 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.94 8.06 -51.93 -0.42 0.52 16 30 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 31 H 0.38 5.76 8.34 -40.82 -0.34 5.42 16 32 H 0.09 1.86 6.20 -52.49 -0.33 1.54 16 33 H 0.12 3.20 6.19 -52.49 -0.32 2.88 16 34 H 0.28 6.75 8.30 -40.82 -0.34 6.41 16 35 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 36 H 0.09 1.67 8.06 -52.48 -0.42 1.24 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.52 7.14 -51.93 -0.37 0.15 16 39 H 0.06 0.69 7.44 -51.93 -0.39 0.30 16 LS Contribution 312.06 15.07 4.70 4.70 Total: -1.00 -28.02 312.06 -8.86 -36.88 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -5.71 Total: 9.59 kcal Atomic # 6 Polarization: -23.00 SS G_CDS: -2.76 Total: -25.77 kcal Atomic # 7 Polarization: -34.09 SS G_CDS: 0.34 Total: -33.74 kcal Atomic # 8 Polarization: -5.46 SS G_CDS: -0.40 Total: -5.86 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.03 Total: 14.20 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.02 -8.86 -36.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405637719.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.936 kcal (2) G-P(sol) polarization free energy of solvation -28.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds