Wall clock time and date at job start Mon Mar 30 2020 06:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 110.33229 * 2 1 4 4 O 1.44421 * 110.37122 * 237.74559 * 2 1 3 5 5 C 1.44421 * 105.27789 * 200.54755 * 4 2 1 6 6 C 1.54483 * 104.80051 * 40.51261 * 5 4 2 7 7 H 1.08996 * 110.50557 * 94.66888 * 6 5 4 8 8 N 1.46498 * 110.50790 * 217.23770 * 6 5 4 9 9 C 1.38853 * 120.00390 * 271.69608 * 8 6 5 10 10 C 1.39565 * 119.84219 * 359.72500 * 9 8 6 11 11 C 1.36345 * 120.16393 * 179.76461 * 10 9 8 12 12 C 1.40888 * 119.83161 * 0.48793 * 11 10 9 13 13 C 1.41137 * 120.15001 * 179.78970 * 12 11 10 14 14 H 1.08001 * 119.99591 * 154.51634 * 13 12 11 15 15 C 1.39865 * 120.00364 * 334.50907 * 13 12 11 16 16 N 1.30910 * 119.99839 * 343.06331 * 15 13 12 17 17 Si 1.86796 * 120.00288 * 163.06633 * 15 13 12 18 18 H 1.48498 * 109.47216 * 59.99826 * 17 15 13 19 19 H 1.48498 * 109.47317 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46921 * 299.99973 * 17 15 13 21 21 C 1.40885 * 119.69136 * 359.76727 * 12 11 10 22 22 C 1.36337 * 119.83477 * 0.02562 * 21 12 11 23 23 C 1.54508 * 104.18370 * 335.95453 * 6 5 4 24 24 H 1.09005 * 110.51003 * 241.42142 * 23 6 5 25 25 C 1.53004 * 110.50887 * 118.71651 * 23 6 5 26 26 H 1.09002 * 109.47294 * 180.80213 * 1 2 3 27 27 H 1.09004 * 109.46969 * 300.79655 * 1 2 3 28 28 H 1.09004 * 109.47175 * 60.79395 * 1 2 3 29 29 H 1.09000 * 110.37474 * 281.68553 * 5 4 2 30 30 H 1.08996 * 110.47058 * 159.39362 * 5 4 2 31 31 H 0.97001 * 120.00074 * 91.70110 * 8 6 5 32 32 H 1.08000 * 119.91814 * 0.02562 * 10 9 8 33 33 H 1.07994 * 120.08416 * 180.23884 * 11 10 9 34 34 H 0.96993 * 119.99746 * 180.02562 * 16 15 13 35 35 H 1.07999 * 120.07846 * 179.97438 * 21 12 11 36 36 H 1.08006 * 119.92013 * 179.97438 * 22 21 12 37 37 H 1.08998 * 109.47150 * 59.99544 * 25 23 6 38 38 H 1.09002 * 109.46668 * 180.02562 * 25 23 6 39 39 H 1.09000 * 109.46664 * 299.99158 * 25 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0221 0.0000 4 8 2.0327 -0.7225 -1.1450 5 6 3.3882 -1.0841 -0.8017 6 6 3.3206 -1.5032 0.6837 7 1 3.2001 -2.5830 0.7706 8 7 4.5226 -1.0632 1.3963 9 6 5.6449 -1.8799 1.4352 10 6 5.6223 -3.1219 0.7991 11 6 6.7222 -3.9271 0.8291 12 6 7.8800 -3.5068 1.5131 13 6 9.0208 -4.3368 1.5522 14 1 10.0000 -3.9026 1.6905 15 6 8.8834 -5.7216 1.4119 16 7 7.7122 -6.2831 1.5761 17 14 10.3708 -6.7700 0.9905 18 1 11.4003 -6.6171 2.0497 19 1 9.9626 -8.1949 0.8997 20 1 10.9323 -6.3314 -0.3125 21 6 7.8937 -2.2540 2.1575 22 6 6.7880 -1.4576 2.1156 23 6 2.0716 -0.7735 1.2266 24 1 2.3487 -0.0836 2.0236 25 6 1.0357 -1.7829 1.7255 26 1 -0.3634 -1.0276 0.0144 27 1 -0.3633 0.5262 0.8828 28 1 -0.3634 0.5015 -0.8970 29 1 4.0519 -0.2283 -0.9246 30 1 3.7275 -1.9179 -1.4162 31 1 4.5345 -0.2012 1.8411 32 1 4.7328 -3.4443 0.2783 33 1 6.7046 -4.8863 0.3332 34 1 7.6170 -7.2434 1.4792 35 1 8.7777 -1.9258 2.6840 36 1 6.7969 -0.4971 2.6095 37 1 1.4696 -2.3841 2.5245 38 1 0.1628 -1.2508 2.1038 39 1 0.7364 -2.4329 0.9033 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405637719.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:59 Heat of formation + Delta-G solvation = -43.814199 kcal Electronic energy + Delta-G solvation = -19393.683219 eV Core-core repulsion = 16492.847143 eV Total energy + Delta-G solvation = -2900.836076 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.08031 -39.49352 -36.56249 -34.96766 -34.28235 -31.73708 -31.34392 -29.91734 -28.19765 -26.35754 -25.69122 -23.53705 -22.70337 -21.53719 -20.73794 -19.16014 -18.02569 -17.64935 -16.80609 -16.39355 -16.34367 -16.13781 -15.59568 -14.81816 -14.56337 -14.46094 -14.01746 -13.86627 -13.65786 -13.49338 -13.31714 -13.16151 -12.83091 -12.74087 -12.71085 -12.44320 -12.32306 -11.95306 -11.73046 -11.59940 -11.54061 -11.15796 -11.05899 -10.74759 -10.28236 -9.41358 -8.54730 -8.18625 -6.02629 1.10259 1.18333 1.40102 1.50868 1.59172 2.27222 2.64812 2.84119 3.12187 3.50362 3.72152 3.85957 3.93534 4.12929 4.18628 4.42194 4.45150 4.50235 4.52239 4.65430 4.70842 4.84647 4.91736 4.96554 4.97108 5.05310 5.12913 5.17420 5.23690 5.28174 5.39198 5.44606 5.65690 5.79189 5.89221 5.95791 6.18328 6.38158 6.65194 6.84970 7.07975 7.12505 7.28908 8.48184 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.038829 B = 0.004129 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.938610 B = 6780.378506 C = 6999.218753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.069 3.931 3 H 0.075 0.925 4 O -0.389 6.389 5 C 0.033 3.967 6 C 0.133 3.867 7 H 0.071 0.929 8 N -0.737 5.737 9 C 0.111 3.889 10 C -0.173 4.173 11 C -0.143 4.143 12 C 0.037 3.963 13 C -0.508 4.508 14 H 0.068 0.932 15 C 0.032 3.968 16 N -0.842 5.842 17 Si 0.976 3.024 18 H -0.262 1.262 19 H -0.270 1.270 20 H -0.263 1.263 21 C -0.195 4.195 22 C -0.162 4.162 23 C -0.121 4.121 24 H 0.100 0.900 25 C -0.138 4.138 26 H 0.066 0.934 27 H 0.092 0.908 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.081 0.919 31 H 0.399 0.601 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.282 0.718 35 H 0.097 0.903 36 H 0.120 0.880 37 H 0.048 0.952 38 H 0.084 0.916 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.582 9.754 -0.975 15.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.011 3.989 3 H 0.093 0.907 4 O -0.308 6.308 5 C -0.046 4.046 6 C 0.025 3.975 7 H 0.089 0.911 8 N -0.372 5.372 9 C 0.012 3.988 10 C -0.195 4.195 11 C -0.163 4.163 12 C 0.034 3.966 13 C -0.539 4.539 14 H 0.086 0.914 15 C -0.179 4.179 16 N -0.471 5.471 17 Si 0.798 3.202 18 H -0.186 1.186 19 H -0.195 1.195 20 H -0.188 1.188 21 C -0.215 4.215 22 C -0.184 4.184 23 C -0.140 4.140 24 H 0.118 0.882 25 C -0.195 4.195 26 H 0.085 0.915 27 H 0.110 0.890 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.099 0.901 31 H 0.235 0.765 32 H 0.120 0.880 33 H 0.115 0.885 34 H 0.092 0.908 35 H 0.116 0.884 36 H 0.138 0.862 37 H 0.067 0.933 38 H 0.103 0.897 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.936 9.369 -1.260 16.022 hybrid contribution 1.095 -0.508 0.109 1.212 sum -11.841 8.861 -1.151 14.834 Atomic orbital electron populations 1.21910 0.91624 1.03420 1.03273 1.23258 0.96598 0.95104 0.83908 0.90717 1.89106 1.27124 1.75156 1.39449 1.23922 0.84101 1.00040 0.96539 1.22115 0.85339 0.99168 0.90851 0.91119 1.43870 1.10765 1.20777 1.61808 1.17415 0.88290 0.91685 1.01412 1.20243 0.98371 0.95010 1.05868 1.20859 0.94425 0.99461 1.01603 1.17815 0.93919 0.92827 0.91998 1.19592 0.94422 0.92258 1.47624 0.91360 1.26602 0.99811 0.99460 0.92070 1.69909 1.26577 1.12716 1.37862 0.85349 0.78321 0.76811 0.79740 1.18612 1.19496 1.18791 1.20768 0.98471 0.97376 1.04931 1.20105 0.93098 1.00445 1.04732 1.22787 0.94339 0.98317 0.98543 0.88150 1.21831 0.98601 0.98396 1.00694 0.91504 0.88979 0.91997 0.92042 0.90109 0.76543 0.88045 0.88482 0.90781 0.88445 0.86201 0.93270 0.89707 0.92670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 8.47 71.98 0.61 -1.62 16 2 C 0.07 1.39 3.84 31.21 0.12 1.51 16 3 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 4 O -0.39 -10.65 11.34 -148.98 -1.69 -12.34 16 5 C 0.03 0.94 7.35 72.49 0.53 1.47 16 6 C 0.13 3.75 2.75 46.01 0.13 3.88 16 7 H 0.07 2.30 6.05 -2.39 -0.01 2.28 16 8 N -0.74 -23.13 5.24 -313.75 -1.64 -24.77 16 9 C 0.11 4.59 6.67 38.67 0.26 4.85 16 10 C -0.17 -8.07 9.14 22.15 0.20 -7.87 16 11 C -0.14 -7.76 8.63 22.48 0.19 -7.56 16 12 C 0.04 2.07 5.57 -21.27 -0.12 1.95 16 13 C -0.51 -28.63 9.03 23.38 0.21 -28.42 16 14 H 0.07 3.72 7.90 -2.91 -0.02 3.70 16 15 C 0.03 1.72 5.15 85.22 0.44 2.16 16 16 N -0.84 -46.29 10.96 21.82 0.24 -46.05 16 17 Si 0.98 40.31 29.59 68.60 2.03 42.34 16 18 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 19 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 20 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 21 C -0.20 -9.69 9.74 22.47 0.22 -9.47 16 22 C -0.16 -6.93 9.82 22.15 0.22 -6.71 16 23 C -0.12 -2.53 3.41 -9.67 -0.03 -2.56 16 24 H 0.10 1.84 7.68 -2.38 -0.02 1.82 16 25 C -0.14 -2.64 7.72 71.98 0.56 -2.08 16 26 H 0.07 1.07 6.40 -2.39 -0.02 1.06 16 27 H 0.09 0.99 7.93 -2.38 -0.02 0.97 16 28 H 0.06 0.93 8.14 -2.39 -0.02 0.92 16 29 H 0.06 1.77 8.06 -2.39 -0.02 1.75 16 30 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.40 10.53 8.34 -92.71 -0.77 9.76 16 32 H 0.10 4.36 6.20 -2.91 -0.02 4.34 16 33 H 0.10 5.57 6.19 -2.91 -0.02 5.55 16 34 H 0.28 14.16 8.30 -92.71 -0.77 13.39 16 35 H 0.10 4.58 8.06 -2.91 -0.02 4.56 16 36 H 0.12 4.27 8.06 -2.91 -0.02 4.25 16 37 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.08 1.19 7.14 -2.39 -0.02 1.17 16 39 H 0.05 1.13 7.44 -2.39 -0.02 1.11 16 Total: -1.00 -62.15 312.06 2.74 -59.41 By element: Atomic # 1 Polarization: 31.62 SS G_CDS: 0.27 Total: 31.90 kcal Atomic # 6 Polarization: -54.01 SS G_CDS: 3.53 Total: -50.47 kcal Atomic # 7 Polarization: -69.42 SS G_CDS: -1.41 Total: -70.83 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: -1.69 Total: -12.34 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 2.03 Total: 42.34 kcal Total: -62.15 2.74 -59.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405637719.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.591 kcal (2) G-P(sol) polarization free energy of solvation -62.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds