Wall clock time and date at job start Mon Mar 30 2020 07:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47499 * 2 1 4 4 C 1.50707 * 109.47176 * 240.00044 * 2 1 3 5 5 H 1.07999 * 120.00093 * 236.14645 * 4 2 1 6 6 C 1.37874 * 119.99737 * 56.13568 * 4 2 1 7 7 N 1.31521 * 119.99999 * 198.04011 * 6 4 2 8 8 Si 1.86796 * 120.00210 * 18.05296 * 6 4 2 9 9 H 1.48502 * 109.47447 * 84.38011 * 8 6 4 10 10 H 1.48500 * 109.47135 * 204.38125 * 8 6 4 11 11 H 1.48506 * 109.47095 * 324.37885 * 8 6 4 12 12 C 1.52995 * 109.47138 * 120.00309 * 2 1 3 13 13 N 1.46502 * 109.46858 * 299.99811 * 12 2 1 14 14 C 1.31480 * 119.99940 * 116.98300 * 13 12 2 15 15 C 1.41977 * 120.91751 * 6.42644 * 14 13 12 16 16 C 1.35647 * 118.59823 * 180.02562 * 15 14 13 17 17 N 1.33774 * 120.41675 * 359.97438 * 16 15 14 18 18 C 1.30405 * 122.02329 * 0.02562 * 17 16 15 19 19 C 1.50701 * 119.28771 * 180.02562 * 18 17 16 20 20 C 1.53009 * 117.49888 * 163.62590 * 19 18 17 21 21 C 1.52999 * 117.50088 * 95.00406 * 19 18 17 22 22 N 1.35656 * 121.42365 * 359.71144 * 18 17 16 23 23 H 0.97000 * 120.31943 * 180.28992 * 22 18 17 24 24 H 1.08996 * 109.47229 * 307.47418 * 1 2 3 25 25 H 1.09002 * 109.46796 * 67.47303 * 1 2 3 26 26 H 1.09000 * 109.47281 * 187.46893 * 1 2 3 27 27 H 1.08997 * 109.47334 * 180.02562 * 3 2 1 28 28 H 1.09007 * 109.46743 * 299.99928 * 3 2 1 29 29 H 1.08995 * 109.46833 * 59.99601 * 3 2 1 30 30 H 0.96996 * 119.99992 * 180.02562 * 7 6 4 31 31 H 1.09003 * 109.47190 * 59.99544 * 12 2 1 32 32 H 1.08998 * 109.47468 * 180.02562 * 12 2 1 33 33 H 1.08005 * 120.70477 * 0.02562 * 15 14 13 34 34 H 1.08007 * 119.79611 * 180.02562 * 16 15 14 35 35 H 1.09001 * 115.55283 * 309.32323 * 19 18 17 36 36 H 1.08998 * 117.49886 * 359.97438 * 20 19 18 37 37 H 1.08999 * 117.50025 * 145.02385 * 20 19 18 38 38 H 1.09003 * 117.50286 * 214.98140 * 21 19 18 39 39 H 1.08999 * 117.49720 * 359.97224 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.7036 -1.5508 -1.1327 6 6 1.6348 -0.2876 -2.4812 7 7 1.7662 -1.0862 -3.5179 8 14 0.9100 1.4196 -2.7033 9 1 2.0080 2.4070 -2.8605 10 1 0.0501 1.4386 -3.9139 11 1 0.0955 1.7704 -1.5121 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4453 14 6 0.7475 -0.6510 3.2804 15 6 0.4477 -2.0290 3.1165 16 6 -0.3882 -2.6218 4.0052 17 7 -0.9153 -1.9175 5.0130 18 6 -0.6537 -0.6512 5.1827 19 6 -1.2811 0.0825 6.3399 20 6 -0.6724 1.4293 6.7359 21 6 -0.4627 0.2033 7.6270 22 7 0.1758 0.0182 4.3436 23 1 0.3625 0.9592 4.4873 24 1 -0.3633 0.6252 0.8155 25 1 -0.3633 0.3937 -0.9493 26 1 -0.3634 -1.0189 0.1336 27 1 3.1301 1.4425 -0.0005 28 1 1.6768 1.9563 -0.8901 29 1 1.6767 1.9563 0.8899 30 1 1.4869 -0.7886 -4.3978 31 1 1.6766 -1.7490 1.2492 32 1 3.1300 -0.7209 1.2494 33 1 0.8761 -2.5935 2.3014 34 1 -0.6292 -3.6693 3.8991 35 1 -2.3607 -0.0306 6.4386 36 1 0.1820 1.7844 6.1598 37 1 -1.3515 2.2024 7.0953 38 1 -1.0039 0.1698 8.5726 39 1 0.5292 -0.2483 7.6369 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413416656.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:53 Heat of formation + Delta-G solvation = 108.479017 kcal Electronic energy + Delta-G solvation = -19585.598015 eV Core-core repulsion = 16723.658620 eV Total energy + Delta-G solvation = -2861.939395 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.96469 -37.70045 -36.68410 -34.66199 -33.30614 -31.59793 -29.76279 -26.10857 -25.98014 -25.23872 -24.74279 -23.09412 -22.46246 -20.91243 -18.62012 -18.42853 -17.22957 -16.47598 -16.04834 -15.56399 -15.35893 -14.91593 -14.54425 -13.86396 -13.21710 -13.10901 -12.91306 -12.67621 -12.30819 -12.01397 -11.99249 -11.77620 -11.66928 -11.08577 -10.99642 -10.93583 -10.63294 -10.24391 -10.00791 -9.91493 -9.82695 -9.65688 -9.04201 -8.65668 -8.51440 -8.24956 -7.15850 -6.07932 -4.00672 0.88780 2.14692 2.71217 3.22502 3.34330 3.44627 3.45996 3.72065 3.91508 4.31809 4.46708 4.46991 4.72584 4.77225 5.09608 5.18024 5.23909 5.34658 5.42144 5.49018 5.56860 5.62876 6.03661 6.10722 6.16588 6.27586 6.39899 6.59847 6.73307 6.77370 6.84632 6.96495 7.01976 7.08451 7.16936 7.43916 7.64482 7.87772 8.05960 8.47546 8.57556 8.98148 9.60328 11.05335 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.033708 B = 0.004844 C = 0.004551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.454343 B = 5779.410387 C = 6150.387503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.048 3.952 3 C -0.132 4.132 4 C -0.515 4.515 5 H 0.072 0.928 6 C 0.077 3.923 7 N -0.893 5.893 8 Si 0.876 3.124 9 H -0.286 1.286 10 H -0.305 1.305 11 H -0.245 1.245 12 C 0.087 3.913 13 N -0.582 5.582 14 C 0.371 3.629 15 C -0.250 4.250 16 C 0.114 3.886 17 N -0.554 5.554 18 C 0.428 3.572 19 C -0.112 4.112 20 C -0.176 4.176 21 C -0.149 4.149 22 N -0.616 5.616 23 H 0.414 0.586 24 H 0.022 0.978 25 H 0.052 0.948 26 H 0.037 0.963 27 H 0.043 0.957 28 H 0.030 0.970 29 H 0.039 0.961 30 H 0.263 0.737 31 H 0.041 0.959 32 H 0.069 0.931 33 H 0.152 0.848 34 H 0.155 0.845 35 H 0.142 0.858 36 H 0.099 0.901 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.321 2.937 21.452 22.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.047 3.953 3 C -0.189 4.189 4 C -0.553 4.553 5 H 0.090 0.910 6 C -0.125 4.125 7 N -0.530 5.530 8 Si 0.708 3.292 9 H -0.213 1.213 10 H -0.234 1.234 11 H -0.171 1.171 12 C -0.043 4.043 13 N -0.306 5.306 14 C 0.099 3.901 15 C -0.277 4.277 16 C -0.022 4.022 17 N -0.279 5.279 18 C 0.162 3.838 19 C -0.132 4.132 20 C -0.214 4.214 21 C -0.187 4.187 22 N -0.241 5.241 23 H 0.253 0.747 24 H 0.041 0.959 25 H 0.070 0.930 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.087 0.913 33 H 0.170 0.830 34 H 0.173 0.827 35 H 0.160 0.840 36 H 0.117 0.883 37 H 0.130 0.870 38 H 0.128 0.872 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -6.291 3.053 21.353 22.469 hybrid contribution 0.136 0.745 -1.175 1.398 sum -6.154 3.799 20.179 21.436 Atomic orbital electron populations 1.22238 0.98391 0.99127 0.99584 1.18448 0.91926 0.92487 0.92451 1.22117 1.00156 0.98323 0.98335 1.20840 1.29834 1.16000 0.88622 0.91036 1.24925 0.94672 0.96968 0.95939 1.70006 1.47809 1.34974 1.00189 0.87484 0.79357 0.85984 0.76346 1.21323 1.23408 1.17058 1.22089 0.98907 0.95562 0.87701 1.72261 1.15101 1.37060 1.06212 1.18905 0.93500 0.88900 0.88764 1.22619 1.05534 0.95049 1.04471 1.22103 0.91603 0.99571 0.88906 1.67884 1.30485 1.04420 1.25064 1.21885 0.85064 0.88502 0.88385 1.20902 1.00217 0.99107 0.92942 1.23148 1.03494 0.91222 1.03495 1.23029 1.01437 1.00471 0.93760 1.42690 1.41931 1.14319 1.25188 0.74705 0.95889 0.92960 0.94425 0.93760 0.95111 0.94236 0.92758 0.94131 0.91258 0.83042 0.82736 0.84037 0.88309 0.86990 0.87204 0.88229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 7.55 37.16 0.28 -2.94 16 2 C 0.05 1.18 0.57 -155.66 -0.09 1.09 16 3 C -0.13 -3.10 7.67 37.16 0.28 -2.82 16 4 C -0.52 -14.64 8.61 -34.44 -0.30 -14.93 16 5 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 6 C 0.08 2.26 5.27 -17.82 -0.09 2.16 16 7 N -0.89 -27.62 13.96 55.43 0.77 -26.84 16 8 Si 0.88 22.49 22.90 -169.99 -3.89 18.60 16 9 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 10 H -0.31 -7.89 7.11 56.52 0.40 -7.49 16 11 H -0.24 -5.94 4.58 56.52 0.26 -5.69 16 12 C 0.09 1.88 5.07 -4.04 -0.02 1.86 16 13 N -0.58 -11.29 9.29 -60.07 -0.56 -11.85 16 14 C 0.37 6.24 7.72 -155.64 -1.20 5.03 16 15 C -0.25 -3.98 9.29 -39.08 -0.36 -4.34 16 16 C 0.11 1.57 11.16 -17.63 -0.20 1.38 16 17 N -0.55 -7.46 10.26 -10.55 -0.11 -7.57 16 18 C 0.43 5.05 7.38 -154.93 -1.14 3.91 16 19 C -0.11 -0.86 6.24 -91.77 -0.57 -1.43 16 20 C -0.18 -1.00 9.88 -26.73 -0.26 -1.27 16 21 C -0.15 -0.89 10.23 -26.73 -0.27 -1.17 16 22 N -0.62 -8.09 5.36 -9.30 -0.05 -8.14 16 23 H 0.41 4.64 6.88 -40.82 -0.28 4.36 16 24 H 0.02 0.50 7.84 -51.93 -0.41 0.09 16 25 H 0.05 1.29 3.89 -51.93 -0.20 1.08 16 26 H 0.04 0.87 8.13 -51.93 -0.42 0.45 16 27 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.03 0.74 2.65 -51.92 -0.14 0.60 16 29 H 0.04 0.86 7.60 -51.93 -0.39 0.46 16 30 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 31 H 0.04 0.86 5.21 -51.93 -0.27 0.59 16 32 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 33 H 0.15 2.48 5.81 -52.48 -0.30 2.17 16 34 H 0.16 1.72 8.06 -52.48 -0.42 1.30 16 35 H 0.14 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.10 0.59 6.61 -51.93 -0.34 0.24 16 37 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.11 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 305.01 15.07 4.60 4.60 Total: -1.00 -33.16 305.01 -8.61 -41.77 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -5.42 Total: 2.91 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: -3.95 Total: -13.48 kcal Atomic # 7 Polarization: -54.45 SS G_CDS: 0.06 Total: -54.39 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -3.89 Total: 18.60 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.16 -8.61 -41.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413416656.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.250 kcal (2) G-P(sol) polarization free energy of solvation -33.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds