Wall clock time and date at job start Mon Mar 30 2020 06:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50703 * 120.00089 * 2 1 4 4 N 1.46908 * 109.46698 * 120.11357 * 3 2 1 5 5 C 1.46893 * 111.00210 * 72.77370 * 4 3 2 6 6 C 1.50695 * 109.47356 * 282.97609 * 5 4 3 7 7 H 1.08001 * 120.00207 * 354.32306 * 6 5 4 8 8 C 1.37878 * 120.00164 * 174.33293 * 6 5 4 9 9 N 1.31517 * 119.99827 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00038 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46991 * 59.99740 * 10 8 6 12 12 H 1.48501 * 109.46879 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47405 * 299.99712 * 10 8 6 14 14 C 1.46908 * 110.99461 * 196.73123 * 4 3 2 15 15 H 1.09004 * 109.46340 * 195.22868 * 14 4 3 16 16 C 1.52999 * 109.47022 * 315.22715 * 14 4 3 17 17 C 1.50694 * 109.47206 * 75.23458 * 14 4 3 18 18 C 1.38390 * 120.00268 * 155.68575 * 17 14 4 19 19 N 1.32125 * 119.99791 * 179.97438 * 18 17 14 20 20 C 1.32150 * 119.99956 * 359.97438 * 19 18 17 21 21 C 1.50705 * 119.99558 * 179.97438 * 20 19 18 22 22 C 1.38341 * 120.00502 * 0.02562 * 20 19 18 23 23 N 1.32127 * 120.00376 * 335.40315 * 17 14 4 24 24 H 1.08002 * 119.99839 * 359.97438 * 1 2 3 25 25 H 1.07997 * 120.00026 * 179.97438 * 1 2 3 26 26 H 1.07998 * 120.00326 * 180.02562 * 2 1 3 27 27 H 1.09001 * 109.47003 * 0.11448 * 3 2 1 28 28 H 1.08999 * 109.47366 * 240.10995 * 3 2 1 29 29 H 1.09000 * 109.46955 * 42.97833 * 5 4 3 30 30 H 1.08997 * 109.47117 * 162.96732 * 5 4 3 31 31 H 0.96997 * 119.99976 * 180.02562 * 9 8 6 32 32 H 1.08994 * 109.47353 * 300.00101 * 16 14 4 33 33 H 1.09002 * 109.46637 * 180.02562 * 16 14 4 34 34 H 1.08996 * 109.47106 * 60.00713 * 16 14 4 35 35 H 1.08001 * 119.99655 * 359.97438 * 18 17 14 36 36 H 1.08997 * 109.47098 * 89.99918 * 21 20 19 37 37 H 1.08995 * 109.47051 * 209.99744 * 21 20 19 38 38 H 1.09002 * 109.47000 * 330.00140 * 21 20 19 39 39 H 1.08000 * 119.99672 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9101 1.3816 1.1982 5 6 4.0621 0.4770 1.0874 6 6 3.6161 -0.9386 1.3486 7 1 2.6022 -1.1359 1.6638 8 6 4.5026 -1.9819 1.1853 9 7 5.7373 -1.7417 0.8012 10 14 3.9500 -3.7365 1.5097 11 1 2.8245 -4.0767 0.6026 12 1 5.0820 -4.6656 1.2633 13 1 3.5040 -3.8623 2.9206 14 6 3.3467 2.7621 1.4469 15 1 4.1727 2.7593 2.1581 16 6 3.8073 3.3959 0.1327 17 6 2.1990 3.5576 2.0132 18 6 2.4483 4.6817 2.7810 19 7 1.4419 5.3794 3.2771 20 6 0.1973 5.0041 3.0397 21 6 -0.9506 5.7996 3.6061 22 6 -0.0521 3.8804 2.2722 23 7 0.9544 3.1852 1.7722 24 1 -0.5400 0.9353 0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3552 2.1336 0.0021 28 1 2.6887 1.3637 -0.8909 29 1 4.4833 0.5461 0.0845 30 1 4.8185 0.7606 1.8193 31 1 6.3609 -2.4757 0.6860 32 1 4.6375 2.8206 -0.2768 33 1 4.1316 4.4201 0.3174 34 1 2.9813 3.3987 -0.5784 35 1 3.4656 4.9885 2.9746 36 1 -1.2414 6.5737 2.8961 37 1 -1.7968 5.1372 3.7883 38 1 -0.6436 6.2632 4.5437 39 1 -1.0693 3.5736 2.0787 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428845462.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:37 Heat of formation + Delta-G solvation = 79.404147 kcal Electronic energy + Delta-G solvation = -19783.807549 eV Core-core repulsion = 16920.607373 eV Total energy + Delta-G solvation = -2863.200176 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.03979 -37.77976 -34.36275 -33.42149 -32.67002 -32.24772 -29.94252 -27.45283 -26.83975 -25.00848 -24.41729 -23.29836 -21.71964 -19.89748 -18.72031 -17.47542 -16.66640 -15.88807 -15.47221 -15.04233 -14.73339 -14.63901 -14.26336 -13.83178 -13.26762 -12.98411 -12.71932 -12.59382 -12.53330 -12.14370 -11.95229 -11.63169 -11.53443 -11.34330 -10.94309 -10.93153 -10.81586 -10.62528 -10.39057 -10.13253 -9.63218 -9.29628 -8.84938 -8.65858 -8.43065 -8.36158 -7.21012 -6.01114 -3.99952 0.93218 1.35279 3.20850 3.34306 3.38372 3.41966 3.82946 4.12444 4.37188 4.42428 4.58941 4.77966 5.03971 5.23345 5.30624 5.33508 5.40683 5.47628 5.59121 5.60077 5.66683 5.80745 5.86851 6.02529 6.16593 6.22657 6.30789 6.39940 6.53338 6.64130 6.79205 7.21226 7.32931 7.48689 7.63891 7.74098 7.87964 8.01753 8.14794 8.22633 8.56717 9.07026 9.61978 11.09143 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.025754 B = 0.005426 C = 0.005058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.931764 B = 5158.786727 C = 5534.097050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.105 4.105 3 C 0.093 3.907 4 N -0.515 5.515 5 C 0.190 3.810 6 C -0.500 4.500 7 H 0.070 0.930 8 C 0.055 3.945 9 N -0.900 5.900 10 Si 0.893 3.107 11 H -0.277 1.277 12 H -0.289 1.289 13 H -0.277 1.277 14 C 0.127 3.873 15 H 0.098 0.902 16 C -0.176 4.176 17 C 0.104 3.896 18 C 0.051 3.949 19 N -0.441 5.441 20 C 0.055 3.945 21 C -0.096 4.096 22 C 0.051 3.949 23 N -0.403 5.403 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.131 0.869 27 H 0.079 0.921 28 H 0.026 0.974 29 H 0.001 0.999 30 H 0.023 0.977 31 H 0.261 0.739 32 H 0.070 0.930 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.165 0.835 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.340 13.124 1.135 16.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.268 4.268 2 C -0.123 4.123 3 C -0.035 4.035 4 N -0.238 5.238 5 C 0.065 3.935 6 C -0.539 4.539 7 H 0.088 0.912 8 C -0.146 4.146 9 N -0.540 5.540 10 Si 0.721 3.279 11 H -0.202 1.202 12 H -0.214 1.214 13 H -0.202 1.202 14 C 0.016 3.984 15 H 0.116 0.884 16 C -0.236 4.236 17 C -0.037 4.037 18 C -0.110 4.110 19 N -0.157 5.157 20 C -0.085 4.085 21 C -0.154 4.154 22 C -0.109 4.109 23 N -0.117 5.117 24 H 0.101 0.899 25 H 0.100 0.900 26 H 0.148 0.852 27 H 0.097 0.903 28 H 0.043 0.957 29 H 0.019 0.981 30 H 0.041 0.959 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.183 0.817 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -9.438 12.867 1.498 16.028 hybrid contribution 0.354 -0.839 -0.407 0.997 sum -9.084 12.029 1.091 15.113 Atomic orbital electron populations 1.23489 0.96065 0.99965 1.07320 1.23444 0.95320 1.00087 0.93449 1.21227 0.95541 0.96092 0.90603 1.62188 1.21620 1.02585 1.37388 1.19854 0.86613 0.91175 0.95833 1.21239 0.97940 0.90359 1.44322 0.91203 1.24975 0.94921 0.99113 0.95631 1.69940 1.04327 1.32036 1.47652 0.86637 0.78017 0.84353 0.78901 1.20224 1.21424 1.20234 1.20599 0.91717 0.89776 0.96290 0.88446 1.22453 1.02158 1.00674 0.98268 1.22472 0.93721 0.93296 0.94207 1.23467 0.99251 0.93001 0.95269 1.68232 0.99390 1.29603 1.18454 1.22207 0.93579 0.95768 0.96975 1.20608 0.93967 0.99326 1.01481 1.23681 0.99828 0.92371 0.95040 1.68460 0.99108 1.26591 1.17506 0.89891 0.89958 0.85177 0.90321 0.95652 0.98147 0.95897 0.92954 0.91079 0.92794 0.92218 0.81740 0.90515 0.90509 0.90567 0.82034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -4.17 14.32 29.02 0.42 -3.75 16 2 C -0.10 -2.17 8.20 -36.02 -0.30 -2.47 16 3 C 0.09 1.85 3.60 -4.97 -0.02 1.83 16 4 N -0.51 -10.89 4.17 -230.91 -0.96 -11.85 16 5 C 0.19 4.75 4.38 -4.98 -0.02 4.73 16 6 C -0.50 -13.63 7.05 -34.44 -0.24 -13.87 16 7 H 0.07 1.92 6.20 -52.49 -0.33 1.60 16 8 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 9 N -0.90 -26.18 13.29 55.43 0.74 -25.44 16 10 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 14 C 0.13 2.20 2.55 -68.86 -0.18 2.03 16 15 H 0.10 1.65 7.58 -51.93 -0.39 1.25 16 16 C -0.18 -2.68 8.33 37.16 0.31 -2.37 16 17 C 0.10 1.67 5.80 -82.41 -0.48 1.20 16 18 C 0.05 0.72 10.91 -17.37 -0.19 0.53 16 19 N -0.44 -6.28 10.42 -9.29 -0.10 -6.37 16 20 C 0.05 0.69 6.78 -82.41 -0.56 0.13 16 21 C -0.10 -0.82 10.19 36.01 0.37 -0.45 16 22 C 0.05 0.69 10.88 -17.38 -0.19 0.50 16 23 N -0.40 -6.64 7.54 -9.29 -0.07 -6.71 16 24 H 0.08 1.39 7.83 -52.49 -0.41 0.98 16 25 H 0.08 1.39 8.06 -52.49 -0.42 0.97 16 26 H 0.13 3.05 5.59 -52.49 -0.29 2.75 16 27 H 0.08 1.47 5.10 -51.93 -0.26 1.20 16 28 H 0.03 0.52 6.99 -51.93 -0.36 0.16 16 29 H 0.00 0.02 7.47 -51.93 -0.39 -0.37 16 30 H 0.02 0.60 7.58 -51.93 -0.39 0.21 16 31 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 32 H 0.07 1.16 7.63 -51.93 -0.40 0.76 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.92 6.49 -51.93 -0.34 0.59 16 35 H 0.17 1.88 8.06 -52.49 -0.42 1.46 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.51 8.09 -51.93 -0.42 0.09 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.16 1.69 8.06 -52.49 -0.42 1.26 16 LS Contribution 318.19 15.07 4.80 4.80 Total: -1.00 -30.63 318.19 -7.45 -38.08 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -5.66 Total: 1.54 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: -1.17 Total: -10.55 kcal Atomic # 7 Polarization: -49.98 SS G_CDS: -0.39 Total: -50.37 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.63 -7.45 -38.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428845462.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.484 kcal (2) G-P(sol) polarization free energy of solvation -30.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds