Wall clock time and date at job start Mon Mar 30 2020 06:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50703 * 120.00089 * 2 1 4 4 N 1.46908 * 109.46698 * 120.11357 * 3 2 1 5 5 C 1.46893 * 111.00210 * 72.77370 * 4 3 2 6 6 C 1.50695 * 109.47356 * 282.97609 * 5 4 3 7 7 H 1.08001 * 120.00207 * 354.32306 * 6 5 4 8 8 C 1.37878 * 120.00164 * 174.33293 * 6 5 4 9 9 N 1.31517 * 119.99827 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00038 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46991 * 59.99740 * 10 8 6 12 12 H 1.48501 * 109.46879 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47405 * 299.99712 * 10 8 6 14 14 C 1.46908 * 110.99461 * 196.73123 * 4 3 2 15 15 H 1.09004 * 109.46340 * 195.22868 * 14 4 3 16 16 C 1.52999 * 109.47022 * 315.22715 * 14 4 3 17 17 C 1.50694 * 109.47206 * 75.23458 * 14 4 3 18 18 C 1.38390 * 120.00268 * 155.68575 * 17 14 4 19 19 N 1.32125 * 119.99791 * 179.97438 * 18 17 14 20 20 C 1.32150 * 119.99956 * 359.97438 * 19 18 17 21 21 C 1.50705 * 119.99558 * 179.97438 * 20 19 18 22 22 C 1.38341 * 120.00502 * 0.02562 * 20 19 18 23 23 N 1.32127 * 120.00376 * 335.40315 * 17 14 4 24 24 H 1.08002 * 119.99839 * 359.97438 * 1 2 3 25 25 H 1.07997 * 120.00026 * 179.97438 * 1 2 3 26 26 H 1.07998 * 120.00326 * 180.02562 * 2 1 3 27 27 H 1.09001 * 109.47003 * 0.11448 * 3 2 1 28 28 H 1.08999 * 109.47366 * 240.10995 * 3 2 1 29 29 H 1.09000 * 109.46955 * 42.97833 * 5 4 3 30 30 H 1.08997 * 109.47117 * 162.96732 * 5 4 3 31 31 H 0.96997 * 119.99976 * 180.02562 * 9 8 6 32 32 H 1.08994 * 109.47353 * 300.00101 * 16 14 4 33 33 H 1.09002 * 109.46637 * 180.02562 * 16 14 4 34 34 H 1.08996 * 109.47106 * 60.00713 * 16 14 4 35 35 H 1.08001 * 119.99655 * 359.97438 * 18 17 14 36 36 H 1.08997 * 109.47098 * 89.99918 * 21 20 19 37 37 H 1.08995 * 109.47051 * 209.99744 * 21 20 19 38 38 H 1.09002 * 109.47000 * 330.00140 * 21 20 19 39 39 H 1.08000 * 119.99672 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9101 1.3816 1.1982 5 6 4.0621 0.4770 1.0874 6 6 3.6161 -0.9386 1.3486 7 1 2.6022 -1.1359 1.6638 8 6 4.5026 -1.9819 1.1853 9 7 5.7373 -1.7417 0.8012 10 14 3.9500 -3.7365 1.5097 11 1 2.8245 -4.0767 0.6026 12 1 5.0820 -4.6656 1.2633 13 1 3.5040 -3.8623 2.9206 14 6 3.3467 2.7621 1.4469 15 1 4.1727 2.7593 2.1581 16 6 3.8073 3.3959 0.1327 17 6 2.1990 3.5576 2.0132 18 6 2.4483 4.6817 2.7810 19 7 1.4419 5.3794 3.2771 20 6 0.1973 5.0041 3.0397 21 6 -0.9506 5.7996 3.6061 22 6 -0.0521 3.8804 2.2722 23 7 0.9544 3.1852 1.7722 24 1 -0.5400 0.9353 0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3552 2.1336 0.0021 28 1 2.6887 1.3637 -0.8909 29 1 4.4833 0.5461 0.0845 30 1 4.8185 0.7606 1.8193 31 1 6.3609 -2.4757 0.6860 32 1 4.6375 2.8206 -0.2768 33 1 4.1316 4.4201 0.3174 34 1 2.9813 3.3987 -0.5784 35 1 3.4656 4.9885 2.9746 36 1 -1.2414 6.5737 2.8961 37 1 -1.7968 5.1372 3.7883 38 1 -0.6436 6.2632 4.5437 39 1 -1.0693 3.5736 2.0787 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428845462.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:37 Heat of formation + Delta-G solvation = 59.574690 kcal Electronic energy + Delta-G solvation = -19784.667419 eV Core-core repulsion = 16920.607373 eV Total energy + Delta-G solvation = -2864.060046 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.13152 -39.30101 -35.64544 -34.71447 -34.61179 -33.46663 -31.41368 -28.81656 -28.36883 -26.58334 -25.50561 -24.71859 -23.22955 -21.32786 -20.35215 -18.62147 -18.51226 -17.11094 -16.70822 -16.52651 -16.36499 -16.00388 -15.79814 -15.21798 -14.60355 -14.34556 -14.05036 -13.91668 -13.59286 -13.33978 -13.24129 -13.19427 -13.03327 -12.87338 -12.54196 -12.50678 -12.21183 -12.13207 -11.99268 -11.79526 -11.42682 -11.18089 -10.53483 -10.00281 -9.89371 -9.80650 -8.90610 -8.14236 -6.20065 -0.11525 0.27258 1.40789 1.42499 1.50262 1.66404 2.42009 2.76152 3.13049 3.17151 3.27955 3.37591 3.70202 3.87237 4.12651 4.17913 4.30472 4.36169 4.37654 4.57725 4.65204 4.73701 4.75205 4.82214 4.84034 4.92292 4.99185 5.12770 5.15345 5.19198 5.28325 5.37658 5.56713 5.73487 6.05325 6.10056 6.24038 6.41114 6.46482 6.69800 6.93570 6.97949 7.46144 8.95395 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.025754 B = 0.005426 C = 0.005058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.931764 B = 5158.786727 C = 5534.097050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.142 4.142 3 C 0.104 3.896 4 N -0.523 5.523 5 C 0.208 3.792 6 C -0.505 4.505 7 H 0.065 0.935 8 C 0.004 3.996 9 N -0.934 5.934 10 Si 0.956 3.044 11 H -0.269 1.269 12 H -0.284 1.284 13 H -0.272 1.272 14 C 0.124 3.876 15 H 0.093 0.907 16 C -0.165 4.165 17 C 0.083 3.917 18 C 0.052 3.948 19 N -0.457 5.457 20 C 0.062 3.938 21 C -0.094 4.094 22 C 0.045 3.955 23 N -0.433 5.433 24 H 0.104 0.896 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.096 0.904 28 H 0.010 0.990 29 H -0.027 1.027 30 H 0.001 0.999 31 H 0.262 0.738 32 H 0.050 0.950 33 H 0.083 0.917 34 H 0.056 0.944 35 H 0.185 0.815 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.076 0.924 39 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.912 14.151 1.813 18.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.160 4.160 3 C -0.023 4.023 4 N -0.246 5.246 5 C 0.082 3.918 6 C -0.544 4.544 7 H 0.083 0.917 8 C -0.194 4.194 9 N -0.576 5.576 10 Si 0.781 3.219 11 H -0.194 1.194 12 H -0.210 1.210 13 H -0.198 1.198 14 C 0.014 3.986 15 H 0.111 0.889 16 C -0.225 4.225 17 C -0.057 4.057 18 C -0.107 4.107 19 N -0.173 5.173 20 C -0.079 4.079 21 C -0.151 4.151 22 C -0.115 4.115 23 N -0.147 5.147 24 H 0.122 0.878 25 H 0.115 0.885 26 H 0.115 0.885 27 H 0.114 0.886 28 H 0.028 0.972 29 H -0.010 1.010 30 H 0.019 0.981 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.102 0.898 34 H 0.075 0.925 35 H 0.202 0.798 36 H 0.113 0.887 37 H 0.119 0.881 38 H 0.095 0.905 39 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -12.009 13.912 2.178 18.507 hybrid contribution 1.007 -1.054 -0.587 1.571 sum -11.002 12.858 1.590 16.998 Atomic orbital electron populations 1.23693 0.94956 1.01591 1.03164 1.23256 0.96395 0.99009 0.97360 1.21148 0.95222 0.96466 0.89435 1.62083 1.20082 1.04370 1.38031 1.19472 0.87405 0.91583 0.93337 1.21494 0.97634 0.91607 1.43636 0.91682 1.25767 0.94937 1.03154 0.95526 1.70062 1.05408 1.33166 1.48932 0.85636 0.77785 0.79557 0.78878 1.19386 1.20994 1.19761 1.20626 0.92729 0.88078 0.97194 0.88880 1.22327 1.01232 1.01872 0.97025 1.22150 0.93284 0.94269 0.95986 1.23685 1.00413 0.92250 0.94366 1.68356 1.00098 1.29873 1.18938 1.22883 0.94095 0.95422 0.95502 1.20752 0.93012 0.99748 1.01614 1.24190 1.00342 0.92287 0.94719 1.68305 0.99758 1.27904 1.18715 0.87816 0.88499 0.88475 0.88564 0.97165 1.00973 0.98062 0.92941 0.93047 0.89791 0.92490 0.79793 0.88742 0.88146 0.90495 0.79063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -6.71 14.32 67.78 0.97 -5.74 16 2 C -0.14 -5.89 8.20 25.65 0.21 -5.68 16 3 C 0.10 4.23 3.60 85.56 0.31 4.54 16 4 N -0.52 -22.73 4.17 -884.46 -3.69 -26.42 16 5 C 0.21 10.93 4.38 85.56 0.37 11.31 16 6 C -0.51 -28.44 7.05 25.60 0.18 -28.26 16 7 H 0.07 3.67 6.20 -2.91 -0.02 3.65 16 8 C 0.00 0.21 5.46 84.65 0.46 0.67 16 9 N -0.93 -56.07 13.29 21.45 0.28 -55.79 16 10 Si 0.96 44.82 29.54 68.60 2.03 46.85 16 11 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 12 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 13 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 14 C 0.12 4.37 2.55 44.17 0.11 4.48 16 15 H 0.09 3.26 7.58 -2.39 -0.02 3.25 16 16 C -0.17 -5.10 8.33 71.98 0.60 -4.50 16 17 C 0.08 2.60 5.80 42.55 0.25 2.85 16 18 C 0.05 1.41 10.91 84.69 0.92 2.33 16 19 N -0.46 -12.00 10.42 -183.29 -1.91 -13.91 16 20 C 0.06 1.38 6.78 42.54 0.29 1.66 16 21 C -0.09 -1.24 10.19 71.24 0.73 -0.51 16 22 C 0.05 1.09 10.88 84.67 0.92 2.01 16 23 N -0.43 -13.56 7.54 -183.30 -1.38 -14.94 16 24 H 0.10 3.13 7.83 -2.91 -0.02 3.11 16 25 H 0.10 3.01 8.06 -2.91 -0.02 2.99 16 26 H 0.10 4.69 5.59 -2.91 -0.02 4.67 16 27 H 0.10 3.54 5.10 -2.39 -0.01 3.52 16 28 H 0.01 0.44 6.99 -2.39 -0.02 0.43 16 29 H -0.03 -1.57 7.47 -2.39 -0.02 -1.59 16 30 H 0.00 0.07 7.58 -2.39 -0.02 0.06 16 31 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 32 H 0.05 1.76 7.63 -2.39 -0.02 1.74 16 33 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.06 1.76 6.49 -2.39 -0.02 1.75 16 35 H 0.19 3.97 8.06 -2.91 -0.02 3.94 16 36 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.10 0.88 8.09 -2.39 -0.02 0.86 16 38 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.19 3.23 8.06 -2.91 -0.02 3.21 16 Total: -1.00 -67.55 318.19 2.68 -64.87 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: 1.03 Total: 14.17 kcal Atomic # 6 Polarization: -21.15 SS G_CDS: 6.32 Total: -14.83 kcal Atomic # 7 Polarization: -104.36 SS G_CDS: -6.70 Total: -111.06 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -67.55 2.68 -64.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428845462.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.446 kcal (2) G-P(sol) polarization free energy of solvation -67.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds