Wall clock time and date at job start Mon Mar 30 2020 06:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.32154 * 119.99808 * 2 1 4 4 C 1.32130 * 119.99811 * 180.27643 * 3 2 1 5 5 C 1.38389 * 119.99459 * 359.72859 * 4 3 2 6 6 N 1.32124 * 119.99940 * 359.97438 * 5 4 3 7 7 C 1.32147 * 119.99912 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99618 * 179.97438 * 7 6 5 9 9 H 1.09007 * 109.46541 * 164.99810 * 8 7 6 10 10 C 1.52995 * 109.47391 * 284.99647 * 8 7 6 11 11 N 1.46902 * 109.47068 * 44.99934 * 8 7 6 12 12 C 1.46904 * 110.99812 * 154.99688 * 11 8 7 13 13 C 1.52994 * 109.47099 * 174.73085 * 12 11 8 14 14 C 1.50707 * 115.54696 * 39.57709 * 13 12 11 15 15 H 1.07995 * 120.00411 * 265.27762 * 14 13 12 16 16 C 1.37876 * 119.99907 * 85.28517 * 14 13 12 17 17 N 1.31519 * 119.99770 * 353.43458 * 16 14 13 18 18 Si 1.86803 * 120.00068 * 173.44072 * 16 14 13 19 19 H 1.48500 * 109.47063 * 89.99831 * 18 16 14 20 20 H 1.48507 * 109.46882 * 209.99510 * 18 16 14 21 21 H 1.48494 * 109.46926 * 329.99180 * 18 16 14 22 22 C 1.52999 * 117.50328 * 253.87383 * 13 12 11 23 23 C 1.52994 * 117.50261 * 185.24963 * 13 12 11 24 24 H 1.09003 * 109.46998 * 270.25396 * 1 2 3 25 25 H 1.09003 * 109.46966 * 30.25124 * 1 2 3 26 26 H 1.08993 * 109.46893 * 150.24941 * 1 2 3 27 27 H 1.07996 * 120.00068 * 179.70438 * 4 3 2 28 28 H 1.08005 * 120.00050 * 179.97438 * 5 4 3 29 29 H 1.08991 * 109.47290 * 180.02562 * 10 8 7 30 30 H 1.09003 * 109.47271 * 300.00982 * 10 8 7 31 31 H 1.09008 * 109.46912 * 60.00038 * 10 8 7 32 32 H 1.00901 * 111.00016 * 31.04893 * 11 8 7 33 33 H 1.08997 * 109.47248 * 294.73683 * 12 11 8 34 34 H 1.08998 * 109.46859 * 54.73368 * 12 11 8 35 35 H 0.97008 * 119.99773 * 185.06828 * 17 16 14 36 36 H 1.09001 * 117.49361 * 359.97438 * 22 13 12 37 37 H 1.08995 * 117.50217 * 145.01860 * 22 13 12 38 38 H 1.09001 * 117.49876 * 214.98536 * 23 13 12 39 39 H 1.09003 * 117.49817 * 359.97368 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1678 1.1445 0.0000 4 6 3.4891 1.1445 -0.0055 5 6 4.1809 -0.0540 -0.0056 6 7 3.5202 -1.1982 0.0003 7 6 2.1987 -1.1980 0.0058 8 6 1.4452 -2.5032 0.0120 9 1 0.4049 -2.3207 0.2820 10 6 1.5075 -3.1347 -1.3801 11 7 2.0525 -3.4146 0.9909 12 6 1.0760 -4.4044 1.4652 13 6 1.7749 -5.4129 2.3791 14 6 2.8057 -4.8364 3.3151 15 1 3.8480 -4.8291 3.0324 16 6 2.4182 -4.3183 4.5327 17 7 1.1403 -4.2086 4.8239 18 14 3.7081 -3.7722 5.7686 19 1 4.0344 -2.3410 5.5438 20 1 3.1806 -3.9492 7.1455 21 1 4.9344 -4.5922 5.5991 22 6 2.0332 -6.8131 1.8191 23 6 0.9516 -6.6011 2.8802 24 1 -0.3633 0.0046 1.0277 25 1 -0.3633 0.8877 -0.5177 26 1 -0.3633 -0.8922 -0.5099 27 1 4.0290 2.0798 -0.0103 28 1 5.2610 -0.0541 -0.0106 29 1 0.9622 -4.0784 -1.3757 30 1 1.0570 -2.4583 -2.1065 31 1 2.5478 -3.3171 -1.6501 32 1 2.4520 -2.9022 1.7629 33 1 0.2858 -3.8983 2.0197 34 1 0.6439 -4.9263 0.6115 35 1 0.8661 -3.7772 5.6483 36 1 1.7048 -7.0159 0.7997 37 1 2.9488 -7.3176 2.1276 38 1 1.1557 -6.9660 3.8868 39 1 -0.0882 -6.6641 2.5592 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430762634.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:32 Heat of formation + Delta-G solvation = 69.723338 kcal Electronic energy + Delta-G solvation = -19798.833394 eV Core-core repulsion = 16935.213426 eV Total energy + Delta-G solvation = -2863.619968 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.08867 -37.20231 -35.58200 -34.30639 -32.25046 -31.88080 -29.39158 -27.96221 -25.61764 -25.16604 -23.86706 -22.65370 -20.99752 -20.37096 -19.08017 -17.62589 -16.48846 -15.92391 -15.53643 -15.06864 -14.65168 -14.48189 -14.12793 -13.57944 -13.38851 -12.83228 -12.76878 -12.61341 -12.30077 -11.86600 -11.84281 -11.60908 -11.34040 -11.23478 -10.95205 -10.86939 -10.79172 -10.60669 -10.40076 -10.07338 -9.41924 -8.91095 -8.85086 -8.75078 -8.40183 -8.03061 -7.33992 -5.99898 -4.03332 0.87745 1.30559 3.29285 3.36993 3.41841 3.79498 4.11060 4.30075 4.42381 4.51409 4.75370 5.00628 5.24401 5.28485 5.31980 5.40284 5.50814 5.53802 5.66730 5.69397 5.77495 5.93963 6.07393 6.18200 6.23725 6.43159 6.48204 6.60255 6.61803 6.81173 6.85359 6.98676 7.17642 7.42443 7.48128 7.56528 7.92576 7.95294 8.12162 8.41086 8.57695 8.99972 9.60532 11.08050 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.017499 B = 0.006883 C = 0.005758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.668569 B = 4066.922036 C = 4861.872879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.079 3.921 3 N -0.443 5.443 4 C 0.040 3.960 5 C 0.042 3.958 6 N -0.404 5.404 7 C 0.091 3.909 8 C 0.130 3.870 9 H 0.057 0.943 10 C -0.131 4.131 11 N -0.653 5.653 12 C 0.106 3.894 13 C 0.052 3.948 14 C -0.480 4.480 15 H 0.062 0.938 16 C 0.067 3.933 17 N -0.883 5.883 18 Si 0.885 3.115 19 H -0.283 1.283 20 H -0.288 1.288 21 H -0.273 1.273 22 C -0.206 4.206 23 C -0.163 4.163 24 H 0.083 0.917 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.165 0.835 28 H 0.167 0.833 29 H 0.062 0.938 30 H 0.044 0.956 31 H 0.066 0.934 32 H 0.356 0.644 33 H 0.027 0.973 34 H 0.040 0.960 35 H 0.258 0.742 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.303 8.043 -10.201 12.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.062 4.062 3 N -0.159 5.159 4 C -0.120 4.120 5 C -0.118 4.118 6 N -0.118 5.118 7 C -0.050 4.050 8 C 0.019 3.981 9 H 0.075 0.925 10 C -0.190 4.190 11 N -0.287 5.287 12 C -0.023 4.023 13 C 0.051 3.949 14 C -0.518 4.518 15 H 0.080 0.920 16 C -0.135 4.135 17 N -0.520 5.520 18 Si 0.713 3.287 19 H -0.209 1.209 20 H -0.214 1.214 21 H -0.198 1.198 22 C -0.243 4.243 23 C -0.201 4.201 24 H 0.102 0.898 25 H 0.096 0.904 26 H 0.101 0.899 27 H 0.182 0.818 28 H 0.184 0.816 29 H 0.081 0.919 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.177 0.823 33 H 0.045 0.955 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.156 7.623 -10.481 12.961 hybrid contribution 0.255 1.015 1.460 1.796 sum 0.099 8.638 -9.021 12.490 Atomic orbital electron populations 1.20775 0.88025 1.03685 1.03747 1.22104 0.98343 0.89152 0.96612 1.68247 1.09014 1.29130 1.09489 1.23684 0.90856 0.99803 0.97701 1.23823 1.01952 0.88854 0.97193 1.68365 1.08020 1.28948 1.06470 1.22308 0.90888 0.96186 0.95639 1.20495 0.94655 0.86881 0.96091 0.92549 1.21748 1.02957 1.00089 0.94185 1.60474 1.33106 1.16327 1.18815 1.21455 0.92354 0.93541 0.94957 1.18742 0.96575 0.84748 0.94804 1.20421 0.92912 1.39365 0.99079 0.92013 1.24997 0.95019 0.95865 0.97637 1.70000 1.14202 1.42818 1.25020 0.86700 0.82234 0.78844 0.80930 1.20931 1.21370 1.19757 1.22980 1.00025 1.05214 0.96113 1.22522 0.93432 1.06901 0.97245 0.89837 0.90369 0.89879 0.81780 0.81593 0.91917 0.93671 0.91496 0.82282 0.95452 0.94189 0.93266 0.91863 0.90785 0.90306 0.92211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.25 9.41 36.01 0.34 -0.91 16 2 C 0.08 1.19 6.78 -82.41 -0.56 0.63 16 3 N -0.44 -6.53 10.42 -9.29 -0.10 -6.63 16 4 C 0.04 0.50 11.23 -17.37 -0.19 0.30 16 5 C 0.04 0.56 11.23 -17.37 -0.19 0.37 16 6 N -0.40 -6.84 10.18 -9.29 -0.09 -6.93 16 7 C 0.09 1.51 5.39 -82.42 -0.44 1.06 16 8 C 0.13 2.18 2.48 -68.86 -0.17 2.01 16 9 H 0.06 0.90 5.66 -51.93 -0.29 0.60 16 10 C -0.13 -1.95 9.39 37.16 0.35 -1.60 16 11 N -0.65 -13.50 5.91 -107.95 -0.64 -14.14 16 12 C 0.11 2.33 5.58 -3.82 -0.02 2.30 16 13 C 0.05 1.27 1.76 -155.66 -0.27 1.00 16 14 C -0.48 -12.88 7.47 -34.44 -0.26 -13.14 16 15 H 0.06 1.71 7.82 -52.49 -0.41 1.30 16 16 C 0.07 1.81 5.39 -17.82 -0.10 1.72 16 17 N -0.88 -24.61 12.92 55.43 0.72 -23.89 16 18 Si 0.88 21.26 29.55 -169.99 -5.02 16.23 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 21 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 22 C -0.21 -4.60 9.88 -26.73 -0.26 -4.87 16 23 C -0.16 -3.85 9.45 -26.74 -0.25 -4.10 16 24 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.08 0.89 6.40 -51.93 -0.33 0.56 16 27 H 0.17 1.43 8.06 -52.49 -0.42 1.00 16 28 H 0.17 1.68 8.06 -52.48 -0.42 1.25 16 29 H 0.06 0.91 7.38 -51.93 -0.38 0.53 16 30 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 1.07 8.14 -51.92 -0.42 0.65 16 32 H 0.36 8.27 7.29 -39.29 -0.29 7.99 16 33 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.04 0.81 7.13 -51.93 -0.37 0.44 16 35 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 36 H 0.06 1.28 8.08 -51.93 -0.42 0.86 16 37 H 0.07 1.66 8.14 -51.93 -0.42 1.24 16 38 H 0.08 1.99 8.14 -51.93 -0.42 1.57 16 39 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 325.09 15.07 4.90 4.90 Total: -1.00 -29.75 325.09 -8.14 -37.89 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -5.86 Total: 7.80 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: -2.04 Total: -15.24 kcal Atomic # 7 Polarization: -51.48 SS G_CDS: -0.11 Total: -51.59 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.75 -8.14 -37.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430762634.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.616 kcal (2) G-P(sol) polarization free energy of solvation -29.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds