Wall clock time and date at job start Mon Mar 30 2020 06:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.32154 * 119.99808 * 2 1 4 4 C 1.32130 * 119.99811 * 180.27643 * 3 2 1 5 5 C 1.38389 * 119.99459 * 359.72859 * 4 3 2 6 6 N 1.32124 * 119.99940 * 359.97438 * 5 4 3 7 7 C 1.32147 * 119.99912 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99618 * 179.97438 * 7 6 5 9 9 H 1.09007 * 109.46541 * 164.99810 * 8 7 6 10 10 C 1.52995 * 109.47391 * 284.99647 * 8 7 6 11 11 N 1.46902 * 109.47068 * 44.99934 * 8 7 6 12 12 C 1.46904 * 110.99812 * 154.99688 * 11 8 7 13 13 C 1.52994 * 109.47099 * 174.73085 * 12 11 8 14 14 C 1.50707 * 115.54696 * 39.57709 * 13 12 11 15 15 H 1.07995 * 120.00411 * 265.27762 * 14 13 12 16 16 C 1.37876 * 119.99907 * 85.28517 * 14 13 12 17 17 N 1.31519 * 119.99770 * 353.43458 * 16 14 13 18 18 Si 1.86803 * 120.00068 * 173.44072 * 16 14 13 19 19 H 1.48500 * 109.47063 * 89.99831 * 18 16 14 20 20 H 1.48507 * 109.46882 * 209.99510 * 18 16 14 21 21 H 1.48494 * 109.46926 * 329.99180 * 18 16 14 22 22 C 1.52999 * 117.50328 * 253.87383 * 13 12 11 23 23 C 1.52994 * 117.50261 * 185.24963 * 13 12 11 24 24 H 1.09003 * 109.46998 * 270.25396 * 1 2 3 25 25 H 1.09003 * 109.46966 * 30.25124 * 1 2 3 26 26 H 1.08993 * 109.46893 * 150.24941 * 1 2 3 27 27 H 1.07996 * 120.00068 * 179.70438 * 4 3 2 28 28 H 1.08005 * 120.00050 * 179.97438 * 5 4 3 29 29 H 1.08991 * 109.47290 * 180.02562 * 10 8 7 30 30 H 1.09003 * 109.47271 * 300.00982 * 10 8 7 31 31 H 1.09008 * 109.46912 * 60.00038 * 10 8 7 32 32 H 1.00901 * 111.00016 * 31.04893 * 11 8 7 33 33 H 1.08997 * 109.47248 * 294.73683 * 12 11 8 34 34 H 1.08998 * 109.46859 * 54.73368 * 12 11 8 35 35 H 0.97008 * 119.99773 * 185.06828 * 17 16 14 36 36 H 1.09001 * 117.49361 * 359.97438 * 22 13 12 37 37 H 1.08995 * 117.50217 * 145.01860 * 22 13 12 38 38 H 1.09001 * 117.49876 * 214.98536 * 23 13 12 39 39 H 1.09003 * 117.49817 * 359.97368 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1678 1.1445 0.0000 4 6 3.4891 1.1445 -0.0055 5 6 4.1809 -0.0540 -0.0056 6 7 3.5202 -1.1982 0.0003 7 6 2.1987 -1.1980 0.0058 8 6 1.4452 -2.5032 0.0120 9 1 0.4049 -2.3207 0.2820 10 6 1.5075 -3.1347 -1.3801 11 7 2.0525 -3.4146 0.9909 12 6 1.0760 -4.4044 1.4652 13 6 1.7749 -5.4129 2.3791 14 6 2.8057 -4.8364 3.3151 15 1 3.8480 -4.8291 3.0324 16 6 2.4182 -4.3183 4.5327 17 7 1.1403 -4.2086 4.8239 18 14 3.7081 -3.7722 5.7686 19 1 4.0344 -2.3410 5.5438 20 1 3.1806 -3.9492 7.1455 21 1 4.9344 -4.5922 5.5991 22 6 2.0332 -6.8131 1.8191 23 6 0.9516 -6.6011 2.8802 24 1 -0.3633 0.0046 1.0277 25 1 -0.3633 0.8877 -0.5177 26 1 -0.3633 -0.8922 -0.5099 27 1 4.0290 2.0798 -0.0103 28 1 5.2610 -0.0541 -0.0106 29 1 0.9622 -4.0784 -1.3757 30 1 1.0570 -2.4583 -2.1065 31 1 2.5478 -3.3171 -1.6501 32 1 2.4520 -2.9022 1.7629 33 1 0.2858 -3.8983 2.0197 34 1 0.6439 -4.9263 0.6115 35 1 0.8661 -3.7772 5.6483 36 1 1.7048 -7.0159 0.7997 37 1 2.9488 -7.3176 2.1276 38 1 1.1557 -6.9660 3.8868 39 1 -0.0882 -6.6641 2.5592 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430762634.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:32 Heat of formation + Delta-G solvation = 50.531781 kcal Electronic energy + Delta-G solvation = -19799.665602 eV Core-core repulsion = 16935.213426 eV Total energy + Delta-G solvation = -2864.452176 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.18112 -38.89262 -37.07279 -35.39793 -33.96114 -33.49945 -30.71772 -28.97127 -27.55653 -26.61278 -25.29047 -23.71956 -22.83693 -21.66592 -20.98300 -18.77365 -17.97425 -17.46319 -16.77636 -16.60283 -16.21125 -15.90167 -15.65370 -15.09110 -14.86330 -14.40195 -13.85915 -13.72166 -13.47717 -13.34618 -13.26207 -13.12463 -12.90284 -12.81326 -12.66471 -12.45721 -12.34233 -12.02250 -11.95824 -11.84556 -11.27601 -10.74251 -10.40099 -10.02306 -9.96115 -9.83792 -8.96395 -8.07319 -6.14707 -0.18882 0.20585 1.36323 1.40014 1.48778 2.42271 2.71399 3.09940 3.16704 3.23238 3.32351 3.58441 3.70018 3.82929 4.17195 4.29002 4.35676 4.44273 4.47806 4.50229 4.64052 4.66352 4.77024 4.79525 4.82264 4.98016 5.01173 5.06923 5.09069 5.15437 5.30685 5.36806 5.51309 5.65848 5.68993 5.81189 6.33277 6.44767 6.59421 6.67321 6.89980 6.93051 7.50755 8.99707 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.017499 B = 0.006883 C = 0.005758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.668569 B = 4066.922036 C = 4861.872879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.070 3.930 3 N -0.460 5.460 4 C 0.050 3.950 5 C 0.035 3.965 6 N -0.439 5.439 7 C 0.067 3.933 8 C 0.129 3.871 9 H 0.065 0.935 10 C -0.123 4.123 11 N -0.659 5.659 12 C 0.120 3.880 13 C 0.024 3.976 14 C -0.485 4.485 15 H 0.045 0.955 16 C 0.028 3.972 17 N -0.906 5.906 18 Si 0.938 3.062 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.272 1.272 22 C -0.186 4.186 23 C -0.165 4.165 24 H 0.079 0.921 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.206 0.794 28 H 0.197 0.803 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.050 0.950 32 H 0.337 0.663 33 H 0.003 0.997 34 H 0.060 0.940 35 H 0.257 0.743 36 H 0.089 0.911 37 H 0.069 0.931 38 H 0.054 0.946 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.009 9.055 -11.302 14.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.070 4.070 3 N -0.175 5.175 4 C -0.111 4.111 5 C -0.125 4.125 6 N -0.154 5.154 7 C -0.073 4.073 8 C 0.018 3.982 9 H 0.083 0.917 10 C -0.181 4.181 11 N -0.290 5.290 12 C -0.009 4.009 13 C 0.023 3.977 14 C -0.524 4.524 15 H 0.064 0.936 16 C -0.172 4.172 17 N -0.544 5.544 18 Si 0.765 3.235 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.197 1.197 22 C -0.224 4.224 23 C -0.203 4.203 24 H 0.098 0.902 25 H 0.112 0.888 26 H 0.112 0.888 27 H 0.223 0.777 28 H 0.214 0.786 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.156 0.844 33 H 0.021 0.979 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.108 0.892 37 H 0.088 0.912 38 H 0.073 0.927 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.138 8.619 -11.603 14.455 hybrid contribution 0.244 0.755 1.764 1.935 sum 0.381 9.374 -9.839 13.595 Atomic orbital electron populations 1.20835 0.86402 1.04979 1.03854 1.22416 0.99569 0.88813 0.96195 1.68346 1.10118 1.28903 1.10175 1.24358 0.90356 1.01166 0.95201 1.24386 1.03402 0.88335 0.96390 1.68284 1.08592 1.31002 1.07506 1.22239 0.91109 0.96351 0.97594 1.20582 0.94913 0.86902 0.95772 0.91740 1.21673 1.02210 1.00663 0.93540 1.60452 1.33232 1.17074 1.18277 1.21244 0.91628 0.93237 0.94783 1.18947 0.96982 0.86032 0.95747 1.20533 0.92711 1.39285 0.99841 0.93638 1.25535 0.96476 0.96208 0.98982 1.70086 1.15382 1.43664 1.25310 0.85866 0.80252 0.78386 0.79007 1.20711 1.21228 1.19696 1.22978 0.99225 1.03189 0.96964 1.22425 0.94553 1.06774 0.96561 0.90199 0.88840 0.88835 0.77745 0.78621 0.91672 0.91200 0.93035 0.84444 0.97862 0.92199 0.93440 0.89230 0.91234 0.92712 0.90763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.34 9.41 71.24 0.67 -1.67 16 2 C 0.07 2.02 6.78 42.54 0.29 2.31 16 3 N -0.46 -12.71 10.42 -183.29 -1.91 -14.62 16 4 C 0.05 1.12 11.23 84.68 0.95 2.07 16 5 C 0.04 0.88 11.23 84.68 0.95 1.84 16 6 N -0.44 -14.59 10.18 -183.29 -1.87 -16.45 16 7 C 0.07 2.18 5.39 42.54 0.23 2.41 16 8 C 0.13 4.25 2.48 44.17 0.11 4.36 16 9 H 0.06 2.00 5.66 -2.38 -0.01 1.99 16 10 C -0.12 -3.47 9.39 71.98 0.68 -2.79 16 11 N -0.66 -27.27 5.91 -495.44 -2.93 -30.20 16 12 C 0.12 5.26 5.58 86.30 0.48 5.74 16 13 C 0.02 1.15 1.76 -52.93 -0.09 1.06 16 14 C -0.49 -26.40 7.47 25.60 0.19 -26.21 16 15 H 0.05 2.57 7.82 -2.91 -0.02 2.54 16 16 C 0.03 1.52 5.39 84.65 0.46 1.97 16 17 N -0.91 -51.15 12.92 21.45 0.28 -50.87 16 18 Si 0.94 44.08 29.55 68.60 2.03 46.10 16 19 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 20 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 21 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 22 C -0.19 -8.11 9.88 30.59 0.30 -7.81 16 23 C -0.17 -7.76 9.45 30.59 0.29 -7.47 16 24 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.09 1.87 6.40 -2.39 -0.02 1.85 16 27 H 0.21 2.76 8.06 -2.91 -0.02 2.74 16 28 H 0.20 3.47 8.06 -2.91 -0.02 3.45 16 29 H 0.06 1.78 7.38 -2.39 -0.02 1.76 16 30 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 32 H 0.34 16.00 7.29 -89.69 -0.65 15.35 16 33 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 34 H 0.06 2.33 7.13 -2.39 -0.02 2.32 16 35 H 0.26 14.00 8.32 -92.70 -0.77 13.23 16 36 H 0.09 3.41 8.08 -2.39 -0.02 3.39 16 37 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 38 H 0.05 2.80 8.14 -2.39 -0.02 2.78 16 39 H 0.07 3.22 8.14 -2.39 -0.02 3.20 16 Total: -1.00 -64.01 325.09 1.49 -62.52 By element: Atomic # 1 Polarization: 27.33 SS G_CDS: 0.39 Total: 27.72 kcal Atomic # 6 Polarization: -29.70 SS G_CDS: 5.50 Total: -24.20 kcal Atomic # 7 Polarization: -105.72 SS G_CDS: -6.43 Total: -112.15 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Total: -64.01 1.49 -62.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430762634.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.054 kcal (2) G-P(sol) polarization free energy of solvation -64.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds