Wall clock time and date at job start Mon Mar 30 2020 06:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.32159 * 120.00113 * 2 1 4 4 C 1.32122 * 120.00118 * 179.97438 * 3 2 1 5 5 C 1.38378 * 120.00078 * 359.97438 * 4 3 2 6 6 N 1.32130 * 119.99898 * 359.74900 * 5 4 3 7 7 C 1.32158 * 119.99567 * 0.50418 * 6 5 4 8 8 C 1.50700 * 119.99664 * 179.77032 * 7 6 5 9 9 H 1.09003 * 109.46626 * 202.26913 * 8 7 6 10 10 C 1.53000 * 109.47373 * 82.26918 * 8 7 6 11 11 N 1.46899 * 109.47090 * 322.26787 * 8 7 6 12 12 C 1.46905 * 111.00143 * 203.88609 * 11 8 7 13 13 C 1.53000 * 109.47441 * 173.61911 * 12 11 8 14 14 C 1.50701 * 115.54589 * 40.26927 * 13 12 11 15 15 H 1.07999 * 119.99865 * 265.12081 * 14 13 12 16 16 C 1.37874 * 120.00176 * 85.12862 * 14 13 12 17 17 N 1.31519 * 120.00014 * 183.75414 * 16 14 13 18 18 Si 1.86799 * 120.00086 * 3.74613 * 16 14 13 19 19 H 1.48508 * 109.46745 * 92.99704 * 18 16 14 20 20 H 1.48498 * 109.47622 * 212.99837 * 18 16 14 21 21 H 1.48497 * 109.47187 * 333.00015 * 18 16 14 22 22 C 1.52991 * 117.50088 * 254.55948 * 13 12 11 23 23 C 1.52996 * 117.49838 * 185.93440 * 13 12 11 24 24 H 1.09000 * 109.46956 * 263.78008 * 1 2 3 25 25 H 1.08999 * 109.47244 * 23.78188 * 1 2 3 26 26 H 1.09000 * 109.46836 * 143.77955 * 1 2 3 27 27 H 1.08002 * 119.99612 * 180.02562 * 4 3 2 28 28 H 1.07999 * 120.00413 * 179.97438 * 5 4 3 29 29 H 1.08994 * 109.46587 * 304.70028 * 10 8 7 30 30 H 1.08998 * 109.47116 * 64.69971 * 10 8 7 31 31 H 1.08994 * 109.47022 * 184.70313 * 10 8 7 32 32 H 1.00898 * 111.00429 * 79.92604 * 11 8 7 33 33 H 1.09007 * 109.46749 * 293.62216 * 12 11 8 34 34 H 1.09003 * 109.46974 * 53.61726 * 12 11 8 35 35 H 0.96998 * 119.99860 * 180.02562 * 17 16 14 36 36 H 1.09002 * 117.49927 * 0.02562 * 22 13 12 37 37 H 1.09006 * 117.49977 * 145.01852 * 22 13 12 38 38 H 1.08998 * 117.49827 * 214.97901 * 23 13 12 39 39 H 1.09001 * 117.50112 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1678 1.1445 0.0000 4 6 3.4890 1.1445 0.0005 5 6 4.1809 -0.0539 0.0016 6 7 3.5203 -1.1981 0.0071 7 6 2.1987 -1.1981 0.0015 8 6 1.4452 -2.5032 0.0026 9 1 0.4416 -2.3435 -0.3916 10 6 1.3522 -3.0373 1.4333 11 7 2.1525 -3.4776 -0.8388 12 6 1.2351 -4.5162 -1.3265 13 6 1.9679 -5.4175 -2.3223 14 6 3.3887 -5.7656 -1.9601 15 1 4.2057 -5.1808 -2.3563 16 6 3.6456 -6.8307 -1.1232 17 7 4.8793 -7.0895 -0.7480 18 14 2.2415 -7.9061 -0.5221 19 1 2.0798 -9.0656 -1.4359 20 1 2.5428 -8.3938 0.8478 21 1 0.9856 -7.1141 -0.5004 22 6 1.6387 -5.2448 -3.8063 23 6 1.1441 -6.4804 -3.0518 24 1 -0.3633 -0.1113 1.0216 25 1 -0.3634 0.9404 -0.4144 26 1 -0.3633 -0.8291 -0.6073 27 1 4.0289 2.0799 0.0009 28 1 5.2609 -0.0539 0.0016 29 1 2.3533 -3.1178 1.8568 30 1 0.7558 -2.3542 2.0381 31 1 0.8813 -4.0202 1.4243 32 1 2.9305 -3.8862 -0.3430 33 1 0.8834 -5.1142 -0.4857 34 1 0.3839 -4.0466 -1.8196 35 1 5.0601 -7.8391 -0.1595 36 1 0.9003 -4.4887 -4.0734 37 1 2.4499 -5.3828 -4.5212 38 1 1.6299 -7.4314 -3.2703 39 1 0.0801 -6.5380 -2.8221 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430762644.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:34 Heat of formation + Delta-G solvation = 74.249642 kcal Electronic energy + Delta-G solvation = -19789.097714 eV Core-core repulsion = 16925.674022 eV Total energy + Delta-G solvation = -2863.423692 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.04495 -37.55320 -35.82910 -34.28354 -32.41035 -32.02834 -29.38869 -27.96157 -25.83129 -25.06797 -24.04619 -22.64718 -21.54487 -20.77181 -18.95376 -17.59258 -16.51439 -16.08811 -15.58159 -15.05371 -14.80838 -14.52419 -14.12608 -13.74677 -13.52792 -12.93276 -12.81145 -12.67097 -12.49382 -12.36579 -12.23934 -11.75417 -11.58298 -11.30060 -11.04526 -10.92148 -10.70403 -10.59851 -10.38843 -10.03999 -9.46396 -8.99486 -8.91661 -8.82434 -8.57181 -8.35730 -7.50805 -6.04568 -4.05068 0.92430 1.34655 3.29749 3.39700 3.43624 3.82812 4.12864 4.35031 4.45687 4.48386 4.72223 4.90827 5.14809 5.22363 5.23662 5.27834 5.39705 5.44267 5.48129 5.54109 5.69860 5.84287 5.88244 5.97248 5.99278 6.14860 6.22428 6.32454 6.39259 6.53671 6.56759 6.60907 6.80526 7.07218 7.20094 7.46934 7.79643 7.88789 8.05738 8.32371 8.62887 9.04276 9.58721 11.07141 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.024200 B = 0.005875 C = 0.005592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.757390 B = 4765.166179 C = 5005.727288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.072 3.928 3 N -0.443 5.443 4 C 0.035 3.965 5 C 0.046 3.954 6 N -0.406 5.406 7 C 0.112 3.888 8 C 0.127 3.873 9 H 0.092 0.908 10 C -0.178 4.178 11 N -0.656 5.656 12 C 0.096 3.904 13 C 0.010 3.990 14 C -0.472 4.472 15 H 0.080 0.920 16 C 0.074 3.926 17 N -0.898 5.898 18 Si 0.873 3.127 19 H -0.281 1.281 20 H -0.297 1.297 21 H -0.257 1.257 22 C -0.176 4.176 23 C -0.207 4.207 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.164 0.836 28 H 0.166 0.834 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.368 0.632 33 H 0.022 0.978 34 H 0.046 0.954 35 H 0.262 0.738 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.079 12.587 3.502 15.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.069 4.069 3 N -0.159 5.159 4 C -0.125 4.125 5 C -0.114 4.114 6 N -0.120 5.120 7 C -0.030 4.030 8 C 0.015 3.985 9 H 0.110 0.890 10 C -0.237 4.237 11 N -0.290 5.290 12 C -0.033 4.033 13 C 0.009 3.991 14 C -0.510 4.510 15 H 0.098 0.902 16 C -0.127 4.127 17 N -0.535 5.535 18 Si 0.702 3.298 19 H -0.207 1.207 20 H -0.224 1.224 21 H -0.181 1.181 22 C -0.213 4.213 23 C -0.245 4.245 24 H 0.097 0.903 25 H 0.096 0.904 26 H 0.101 0.899 27 H 0.181 0.819 28 H 0.183 0.817 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.191 0.809 33 H 0.040 0.960 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.976 12.827 3.049 15.409 hybrid contribution -0.582 -1.175 1.098 1.710 sum -8.558 11.652 4.147 15.040 Atomic orbital electron populations 1.20736 0.88259 1.03858 1.03118 1.21990 0.98146 0.89152 0.97603 1.68230 1.09049 1.29097 1.09500 1.23640 0.90824 0.99752 0.98304 1.23817 1.01979 0.88798 0.96769 1.68359 1.08120 1.29024 1.06502 1.22140 0.90704 0.95783 0.94336 1.20486 0.95998 0.89166 0.92833 0.88998 1.22481 1.02831 1.01441 0.96948 1.60323 1.10607 1.17487 1.40585 1.21638 0.93227 0.91601 0.96816 1.19353 0.95516 0.94923 0.89293 1.20256 0.88900 1.13447 1.28415 0.90197 1.24982 0.95092 0.97121 0.95538 1.69912 1.19014 1.29476 1.35145 0.86962 0.84068 0.81398 0.77419 1.20730 1.22413 1.18093 1.22783 1.02118 0.98812 0.97590 1.22981 0.98109 0.94620 1.08787 0.90251 0.90439 0.89934 0.81873 0.81653 0.91738 0.92718 0.91584 0.80851 0.95974 0.93530 0.92785 0.91220 0.89895 0.89739 0.91301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.07 9.59 36.00 0.35 -0.72 16 2 C 0.07 1.01 6.79 -82.42 -0.56 0.45 16 3 N -0.44 -6.22 10.42 -9.29 -0.10 -6.32 16 4 C 0.03 0.43 11.23 -17.37 -0.20 0.23 16 5 C 0.05 0.63 11.23 -17.37 -0.20 0.43 16 6 N -0.41 -6.93 10.11 -9.29 -0.09 -7.02 16 7 C 0.11 1.78 5.79 -82.41 -0.48 1.31 16 8 C 0.13 2.01 2.58 -68.87 -0.18 1.83 16 9 H 0.09 1.27 5.37 -51.93 -0.28 0.99 16 10 C -0.18 -2.58 9.17 37.16 0.34 -2.24 16 11 N -0.66 -13.00 5.72 -107.94 -0.62 -13.62 16 12 C 0.10 1.94 5.43 -3.82 -0.02 1.92 16 13 C 0.01 0.24 1.19 -155.67 -0.19 0.05 16 14 C -0.47 -12.86 8.11 -34.44 -0.28 -13.14 16 15 H 0.08 2.45 8.06 -52.49 -0.42 2.02 16 16 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 17 N -0.90 -26.88 13.96 55.43 0.77 -26.10 16 18 Si 0.87 21.28 25.14 -169.99 -4.27 17.01 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.30 -7.33 7.11 56.52 0.40 -6.93 16 21 H -0.26 -5.86 5.29 56.52 0.30 -5.56 16 22 C -0.18 -3.66 9.88 -26.74 -0.26 -3.92 16 23 C -0.21 -4.41 7.42 -26.73 -0.20 -4.61 16 24 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.08 0.81 6.19 -51.93 -0.32 0.49 16 27 H 0.16 1.38 8.06 -52.49 -0.42 0.96 16 28 H 0.17 1.76 8.06 -52.49 -0.42 1.33 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.97 7.39 -51.93 -0.38 0.59 16 32 H 0.37 8.29 7.53 -39.29 -0.30 7.99 16 33 H 0.02 0.46 5.86 -51.93 -0.30 0.15 16 34 H 0.05 0.84 7.71 -51.93 -0.40 0.44 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.07 1.30 8.09 -51.93 -0.42 0.88 16 37 H 0.08 1.77 8.14 -51.93 -0.42 1.34 16 38 H 0.08 1.89 7.16 -51.93 -0.37 1.52 16 39 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 315.34 15.07 4.75 4.75 Total: -1.00 -31.19 315.34 -7.34 -38.52 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -5.82 Total: 9.20 kcal Atomic # 6 Polarization: -14.46 SS G_CDS: -1.96 Total: -16.42 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: -0.03 Total: -53.06 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.27 Total: 17.01 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.19 -7.34 -38.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430762644.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.774 kcal (2) G-P(sol) polarization free energy of solvation -31.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds