Wall clock time and date at job start Mon Mar 30 2020 06:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.32159 * 120.00113 * 2 1 4 4 C 1.32122 * 120.00118 * 179.97438 * 3 2 1 5 5 C 1.38378 * 120.00078 * 359.97438 * 4 3 2 6 6 N 1.32130 * 119.99898 * 359.74900 * 5 4 3 7 7 C 1.32158 * 119.99567 * 0.50418 * 6 5 4 8 8 C 1.50700 * 119.99664 * 179.77032 * 7 6 5 9 9 H 1.09003 * 109.46626 * 202.26913 * 8 7 6 10 10 C 1.53000 * 109.47373 * 82.26918 * 8 7 6 11 11 N 1.46899 * 109.47090 * 322.26787 * 8 7 6 12 12 C 1.46905 * 111.00143 * 203.88609 * 11 8 7 13 13 C 1.53000 * 109.47441 * 173.61911 * 12 11 8 14 14 C 1.50701 * 115.54589 * 40.26927 * 13 12 11 15 15 H 1.07999 * 119.99865 * 265.12081 * 14 13 12 16 16 C 1.37874 * 120.00176 * 85.12862 * 14 13 12 17 17 N 1.31519 * 120.00014 * 183.75414 * 16 14 13 18 18 Si 1.86799 * 120.00086 * 3.74613 * 16 14 13 19 19 H 1.48508 * 109.46745 * 92.99704 * 18 16 14 20 20 H 1.48498 * 109.47622 * 212.99837 * 18 16 14 21 21 H 1.48497 * 109.47187 * 333.00015 * 18 16 14 22 22 C 1.52991 * 117.50088 * 254.55948 * 13 12 11 23 23 C 1.52996 * 117.49838 * 185.93440 * 13 12 11 24 24 H 1.09000 * 109.46956 * 263.78008 * 1 2 3 25 25 H 1.08999 * 109.47244 * 23.78188 * 1 2 3 26 26 H 1.09000 * 109.46836 * 143.77955 * 1 2 3 27 27 H 1.08002 * 119.99612 * 180.02562 * 4 3 2 28 28 H 1.07999 * 120.00413 * 179.97438 * 5 4 3 29 29 H 1.08994 * 109.46587 * 304.70028 * 10 8 7 30 30 H 1.08998 * 109.47116 * 64.69971 * 10 8 7 31 31 H 1.08994 * 109.47022 * 184.70313 * 10 8 7 32 32 H 1.00898 * 111.00429 * 79.92604 * 11 8 7 33 33 H 1.09007 * 109.46749 * 293.62216 * 12 11 8 34 34 H 1.09003 * 109.46974 * 53.61726 * 12 11 8 35 35 H 0.96998 * 119.99860 * 180.02562 * 17 16 14 36 36 H 1.09002 * 117.49927 * 0.02562 * 22 13 12 37 37 H 1.09006 * 117.49977 * 145.01852 * 22 13 12 38 38 H 1.08998 * 117.49827 * 214.97901 * 23 13 12 39 39 H 1.09001 * 117.50112 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1678 1.1445 0.0000 4 6 3.4890 1.1445 0.0005 5 6 4.1809 -0.0539 0.0016 6 7 3.5203 -1.1981 0.0071 7 6 2.1987 -1.1981 0.0015 8 6 1.4452 -2.5032 0.0026 9 1 0.4416 -2.3435 -0.3916 10 6 1.3522 -3.0373 1.4333 11 7 2.1525 -3.4776 -0.8388 12 6 1.2351 -4.5162 -1.3265 13 6 1.9679 -5.4175 -2.3223 14 6 3.3887 -5.7656 -1.9601 15 1 4.2057 -5.1808 -2.3563 16 6 3.6456 -6.8307 -1.1232 17 7 4.8793 -7.0895 -0.7480 18 14 2.2415 -7.9061 -0.5221 19 1 2.0798 -9.0656 -1.4359 20 1 2.5428 -8.3938 0.8478 21 1 0.9856 -7.1141 -0.5004 22 6 1.6387 -5.2448 -3.8063 23 6 1.1441 -6.4804 -3.0518 24 1 -0.3633 -0.1113 1.0216 25 1 -0.3634 0.9404 -0.4144 26 1 -0.3633 -0.8291 -0.6073 27 1 4.0289 2.0799 0.0009 28 1 5.2609 -0.0539 0.0016 29 1 2.3533 -3.1178 1.8568 30 1 0.7558 -2.3542 2.0381 31 1 0.8813 -4.0202 1.4243 32 1 2.9305 -3.8862 -0.3430 33 1 0.8834 -5.1142 -0.4857 34 1 0.3839 -4.0466 -1.8196 35 1 5.0601 -7.8391 -0.1595 36 1 0.9003 -4.4887 -4.0734 37 1 2.4499 -5.3828 -4.5212 38 1 1.6299 -7.4314 -3.2703 39 1 0.0801 -6.5380 -2.8221 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430762644.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:33 Heat of formation + Delta-G solvation = 51.788799 kcal Electronic energy + Delta-G solvation = -19790.071690 eV Core-core repulsion = 16925.674022 eV Total energy + Delta-G solvation = -2864.397668 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.09813 -39.15240 -37.21724 -35.33334 -34.16755 -33.57253 -30.64192 -28.89474 -27.77786 -26.41112 -25.43362 -23.65850 -23.22508 -21.97140 -20.80614 -18.73748 -18.14044 -17.45338 -16.78800 -16.65901 -16.08412 -15.87942 -15.48084 -15.29836 -14.79849 -14.71873 -13.91032 -13.89688 -13.70926 -13.58878 -13.35541 -13.22544 -13.04054 -12.78573 -12.51907 -12.39316 -12.06828 -12.04341 -11.86341 -11.73956 -11.33544 -10.93551 -10.56000 -10.20705 -9.91045 -9.89115 -8.98111 -8.21307 -6.25271 -0.10261 0.27828 1.36671 1.39506 1.51735 2.41146 2.77252 3.08385 3.16806 3.22723 3.33148 3.47621 3.73668 3.86282 4.11025 4.22855 4.27048 4.36002 4.42693 4.46415 4.49289 4.55441 4.68894 4.76261 4.79831 4.84459 4.89130 4.91363 5.01566 5.12850 5.16934 5.18003 5.39086 5.53819 5.57185 5.80210 6.33412 6.43623 6.55611 6.65277 6.84691 6.99548 7.41422 8.94551 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.024200 B = 0.005875 C = 0.005592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.757390 B = 4765.166179 C = 5005.727288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.071 3.929 3 N -0.458 5.458 4 C 0.046 3.954 5 C 0.031 3.969 6 N -0.452 5.452 7 C 0.087 3.913 8 C 0.129 3.871 9 H 0.118 0.882 10 C -0.170 4.170 11 N -0.673 5.673 12 C 0.104 3.896 13 C -0.019 4.019 14 C -0.463 4.463 15 H 0.024 0.976 16 C 0.019 3.981 17 N -0.951 5.951 18 Si 0.934 3.066 19 H -0.279 1.279 20 H -0.303 1.303 21 H -0.224 1.224 22 C -0.166 4.166 23 C -0.196 4.196 24 H 0.098 0.902 25 H 0.085 0.915 26 H 0.091 0.909 27 H 0.203 0.797 28 H 0.186 0.814 29 H 0.039 0.961 30 H 0.083 0.917 31 H 0.063 0.937 32 H 0.346 0.654 33 H 0.021 0.979 34 H 0.077 0.923 35 H 0.261 0.739 36 H 0.101 0.899 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.427 13.867 3.641 18.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.069 4.069 3 N -0.174 5.174 4 C -0.114 4.114 5 C -0.129 4.129 6 N -0.166 5.166 7 C -0.054 4.054 8 C 0.018 3.982 9 H 0.135 0.865 10 C -0.230 4.230 11 N -0.304 5.304 12 C -0.025 4.025 13 C -0.020 4.020 14 C -0.501 4.501 15 H 0.043 0.957 16 C -0.178 4.178 17 N -0.592 5.592 18 Si 0.760 3.240 19 H -0.205 1.205 20 H -0.231 1.231 21 H -0.146 1.146 22 C -0.203 4.203 23 C -0.234 4.234 24 H 0.116 0.884 25 H 0.104 0.896 26 H 0.110 0.890 27 H 0.219 0.781 28 H 0.203 0.797 29 H 0.058 0.942 30 H 0.101 0.899 31 H 0.082 0.918 32 H 0.166 0.834 33 H 0.039 0.961 34 H 0.095 0.905 35 H 0.070 0.930 36 H 0.120 0.880 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -11.369 14.135 3.165 18.414 hybrid contribution 0.601 -1.429 0.989 1.839 sum -10.768 12.706 4.154 17.165 Atomic orbital electron populations 1.20857 0.85731 1.04704 1.04552 1.22443 0.99789 0.88407 0.96265 1.68360 1.09782 1.29043 1.10223 1.24222 0.90555 1.00704 0.95889 1.24237 1.03087 0.88619 0.96915 1.68263 1.09400 1.31148 1.07796 1.22220 0.90588 0.96468 0.96128 1.20621 0.96633 0.88133 0.92862 0.86489 1.22393 1.01871 1.01997 0.96712 1.60268 1.10573 1.17726 1.41824 1.21559 0.93508 0.91383 0.96044 1.19379 0.93690 0.97419 0.91502 1.20288 0.90284 1.12166 1.27340 0.95739 1.25769 0.97433 0.98643 0.95921 1.70076 1.21658 1.30576 1.36845 0.85979 0.82133 0.79636 0.76278 1.20454 1.23086 1.14645 1.22815 1.02203 0.99548 0.95748 1.23010 0.99435 0.93586 1.07375 0.88352 0.89598 0.89028 0.78078 0.79720 0.94168 0.89854 0.91782 0.83440 0.96135 0.90492 0.92985 0.88031 0.91492 0.91320 0.87872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.78 9.59 71.23 0.68 -1.10 16 2 C 0.07 1.86 6.79 42.53 0.29 2.15 16 3 N -0.46 -11.91 10.42 -183.30 -1.91 -13.82 16 4 C 0.05 1.04 11.23 84.68 0.95 2.00 16 5 C 0.03 0.83 11.23 84.68 0.95 1.79 16 6 N -0.45 -15.60 10.11 -183.30 -1.85 -17.45 16 7 C 0.09 2.70 5.79 42.53 0.25 2.94 16 8 C 0.13 3.86 2.58 44.17 0.11 3.98 16 9 H 0.12 2.84 5.37 -2.39 -0.01 2.83 16 10 C -0.17 -4.72 9.17 71.98 0.66 -4.06 16 11 N -0.67 -26.40 5.72 -495.42 -2.83 -29.23 16 12 C 0.10 3.95 5.43 86.30 0.47 4.42 16 13 C -0.02 -0.84 1.19 -52.93 -0.06 -0.90 16 14 C -0.46 -26.06 8.11 25.60 0.21 -25.85 16 15 H 0.02 1.60 8.06 -2.91 -0.02 1.58 16 16 C 0.02 1.08 5.47 84.65 0.46 1.55 16 17 N -0.95 -59.67 13.96 21.45 0.30 -59.37 16 18 Si 0.93 43.87 25.14 68.60 1.72 45.60 16 19 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 20 H -0.30 -14.47 7.11 99.48 0.71 -13.77 16 21 H -0.22 -9.26 5.29 99.48 0.53 -8.73 16 22 C -0.17 -6.56 9.88 30.59 0.30 -6.26 16 23 C -0.20 -7.77 7.42 30.59 0.23 -7.54 16 24 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.09 1.44 6.19 -2.39 -0.01 1.43 16 27 H 0.20 2.80 8.06 -2.91 -0.02 2.77 16 28 H 0.19 3.88 8.06 -2.91 -0.02 3.86 16 29 H 0.04 1.28 8.14 -2.39 -0.02 1.27 16 30 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.06 1.77 7.39 -2.39 -0.02 1.76 16 32 H 0.35 16.14 7.53 -89.70 -0.68 15.47 16 33 H 0.02 0.78 5.86 -2.38 -0.01 0.77 16 34 H 0.08 2.45 7.71 -2.39 -0.02 2.43 16 35 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 36 H 0.10 3.37 8.09 -2.39 -0.02 3.35 16 37 H 0.07 2.83 8.14 -2.38 -0.02 2.81 16 38 H 0.07 2.94 7.16 -2.39 -0.02 2.92 16 39 H 0.10 3.41 8.14 -2.39 -0.02 3.39 16 Total: -1.00 -71.16 315.34 1.12 -70.04 By element: Atomic # 1 Polarization: 30.96 SS G_CDS: 0.19 Total: 31.16 kcal Atomic # 6 Polarization: -32.41 SS G_CDS: 5.50 Total: -26.91 kcal Atomic # 7 Polarization: -113.59 SS G_CDS: -6.30 Total: -119.89 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.72 Total: 45.60 kcal Total: -71.16 1.12 -70.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430762644.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.829 kcal (2) G-P(sol) polarization free energy of solvation -71.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds