Wall clock time and date at job start Mon Mar 30 2020 07:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38121 * 120.83344 * 2 1 4 4 N 1.32546 * 119.20160 * 179.75027 * 3 2 1 5 5 C 1.31794 * 121.00727 * 0.56137 * 4 3 2 6 6 C 1.50696 * 119.08305 * 179.70958 * 5 4 3 7 7 N 1.31745 * 121.83225 * 359.69520 * 5 4 3 8 8 C 1.32995 * 120.68789 * 0.02562 * 7 5 4 9 9 N 1.38543 * 120.53075 * 179.97438 * 8 7 5 10 10 C 1.46855 * 110.99731 * 62.45382 * 9 8 7 11 11 C 1.53035 * 109.52350 * 174.15788 * 10 9 8 12 12 C 1.53116 * 109.27847 * 59.17966 * 11 10 9 13 13 C 1.50699 * 109.52505 * 182.43916 * 12 11 10 14 14 H 1.08002 * 120.00353 * 119.67724 * 13 12 11 15 15 C 1.37877 * 120.00161 * 299.68610 * 13 12 11 16 16 N 1.31515 * 119.99708 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00092 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47253 * 59.99485 * 17 15 13 19 19 H 1.48499 * 109.46916 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.46948 * 299.99489 * 17 15 13 21 21 C 1.53127 * 109.16023 * 302.34354 * 12 11 10 22 22 C 1.46842 * 111.00712 * 298.24403 * 9 8 7 23 23 H 1.09002 * 109.47109 * 269.71127 * 1 2 3 24 24 H 1.09007 * 109.47397 * 149.71624 * 1 2 3 25 25 H 1.09004 * 109.47574 * 29.71436 * 1 2 3 26 26 H 1.08005 * 120.39474 * 0.03277 * 3 2 1 27 27 H 1.09004 * 109.47311 * 269.98556 * 6 5 4 28 28 H 1.09009 * 109.47072 * 29.98418 * 6 5 4 29 29 H 1.08993 * 109.47273 * 149.98090 * 6 5 4 30 30 H 1.09006 * 109.45886 * 294.17125 * 10 9 8 31 31 H 1.09001 * 109.46425 * 54.13738 * 10 9 8 32 32 H 1.08992 * 109.50135 * 299.23760 * 11 10 9 33 33 H 1.08995 * 109.50109 * 179.11528 * 11 10 9 34 34 H 1.09002 * 109.52840 * 62.24832 * 12 11 10 35 35 H 0.97001 * 119.99894 * 180.02562 * 16 15 13 36 36 H 1.08998 * 109.49906 * 297.71693 * 21 12 11 37 37 H 1.08995 * 109.50268 * 177.59582 * 21 12 11 38 38 H 1.09004 * 109.45974 * 305.85459 * 22 9 8 39 39 H 1.09000 * 109.46674 * 65.81641 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2149 1.1860 0.0000 4 7 3.5398 1.1483 0.0050 5 6 4.1863 -0.0002 -0.0010 6 6 5.6932 0.0075 -0.0016 7 7 3.5518 -1.1548 -0.0064 8 6 2.2226 -1.1988 -0.0063 9 7 1.5587 -2.4148 -0.0124 10 6 1.8633 -3.1868 1.1991 11 6 1.0044 -4.4531 1.2282 12 6 1.2962 -5.2905 -0.0200 13 6 0.4100 -6.5094 -0.0272 14 1 -0.2836 -6.6680 -0.8398 15 6 0.4845 -7.4220 1.0035 16 7 1.3293 -7.2291 1.9928 17 14 -0.6145 -8.9325 0.9949 18 1 -0.3366 -9.7399 -0.2199 19 1 -0.3423 -9.7495 2.2047 20 1 -2.0378 -8.5090 0.9930 21 6 1.0170 -4.4475 -1.2675 22 6 1.8755 -3.1814 -1.2241 23 1 -0.3633 -0.0052 1.0277 24 1 -0.3634 -0.8875 -0.5183 25 1 -0.3634 0.8925 -0.5094 26 1 1.6950 2.1327 0.0005 27 1 6.0562 0.0144 -1.0294 28 1 6.0522 0.8970 0.5164 29 1 6.0613 -0.8829 0.5078 30 1 2.9178 -3.4631 1.1981 31 1 1.6476 -2.5813 2.0794 32 1 -0.0499 -4.1773 1.2431 33 1 1.2421 -5.0336 2.1195 34 1 2.3416 -5.5992 -0.0155 35 1 1.3820 -7.8713 2.7178 36 1 -0.0372 -4.1717 -1.2917 37 1 1.2636 -5.0240 -2.1590 38 1 1.6686 -2.5720 -2.1039 39 1 2.9299 -3.4577 -1.2138 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566485038.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:36 Heat of formation + Delta-G solvation = 41.595087 kcal Electronic energy + Delta-G solvation = -19849.694856 eV Core-core repulsion = 16984.855156 eV Total energy + Delta-G solvation = -2864.839700 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.15472 -38.27473 -34.70997 -34.04202 -32.49667 -30.66069 -30.03565 -29.85372 -26.18704 -25.58521 -23.77250 -22.19568 -21.96915 -21.20071 -18.82615 -17.58751 -16.93476 -16.27335 -15.32505 -14.69387 -14.43501 -14.20667 -14.16077 -13.59371 -13.25226 -13.14862 -12.68076 -12.57208 -12.45482 -12.38274 -12.15829 -12.12034 -11.56730 -11.03257 -10.91300 -10.81740 -10.61730 -10.47272 -10.22890 -10.03501 -9.52263 -9.22090 -9.03024 -8.86811 -8.75141 -8.31001 -8.21384 -5.98416 -4.04027 0.99571 1.14359 3.32555 3.37383 3.39911 3.76437 3.83562 4.07853 4.33386 4.44465 4.96426 4.98344 5.19134 5.31826 5.37157 5.50835 5.54639 5.69307 5.73650 5.79979 5.84203 5.95501 6.03822 6.19192 6.20961 6.28905 6.47113 6.48213 6.55975 6.78748 6.97219 7.05674 7.11790 7.37782 7.42161 7.63041 7.76527 8.00783 8.10825 8.22287 8.45387 8.99332 9.60584 11.07951 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.034805 B = 0.004814 C = 0.004564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.284479 B = 5815.169965 C = 6134.101407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.172 4.172 3 C 0.142 3.858 4 N -0.529 5.529 5 C 0.314 3.686 6 C -0.082 4.082 7 N -0.541 5.541 8 C 0.355 3.645 9 N -0.485 5.485 10 C 0.065 3.935 11 C -0.103 4.103 12 C 0.048 3.952 13 C -0.511 4.511 14 H 0.055 0.945 15 C 0.062 3.938 16 N -0.892 5.892 17 Si 0.891 3.109 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.277 1.277 21 C -0.105 4.105 22 C 0.067 3.933 23 H 0.072 0.928 24 H 0.085 0.915 25 H 0.061 0.939 26 H 0.166 0.834 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.041 0.959 31 H 0.053 0.947 32 H 0.045 0.955 33 H 0.097 0.903 34 H 0.023 0.977 35 H 0.260 0.740 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.237 14.860 -3.207 15.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.178 4.178 3 C -0.023 4.023 4 N -0.244 5.244 5 C 0.045 3.955 6 C -0.141 4.141 7 N -0.259 5.259 8 C 0.118 3.882 9 N -0.209 5.209 10 C -0.060 4.060 11 C -0.141 4.141 12 C 0.029 3.971 13 C -0.550 4.550 14 H 0.073 0.927 15 C -0.139 4.139 16 N -0.531 5.531 17 Si 0.719 3.281 18 H -0.204 1.204 19 H -0.214 1.214 20 H -0.203 1.203 21 C -0.143 4.143 22 C -0.060 4.060 23 H 0.090 0.910 24 H 0.104 0.896 25 H 0.080 0.920 26 H 0.183 0.817 27 H 0.100 0.900 28 H 0.101 0.899 29 H 0.102 0.898 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.115 0.885 34 H 0.042 0.958 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 2.794 14.835 -3.031 15.397 hybrid contribution -0.670 -0.972 0.103 1.185 sum 2.125 13.863 -2.928 14.327 Atomic orbital electron populations 1.20520 0.88724 1.03235 1.02781 1.21476 0.99469 0.93251 1.03602 1.23005 0.89432 0.97868 0.91946 1.68206 1.09880 1.30589 1.15732 1.23018 0.97872 0.83230 0.91374 1.20524 0.86173 1.03863 1.03545 1.68500 1.11139 1.31004 1.15290 1.20426 0.86371 0.92889 0.88546 1.60262 1.53116 1.02083 1.05475 1.22334 0.99750 0.95677 0.88279 1.21709 0.97053 0.91679 1.03672 1.18692 0.96982 0.92300 0.89104 1.21143 1.21323 1.05681 1.06813 0.92717 1.24965 0.95445 0.97937 0.95593 1.69859 1.36342 1.36208 1.10693 0.86684 0.81128 0.83029 0.77299 1.20362 1.21377 1.20299 1.21704 0.98669 0.93328 1.00593 1.22159 0.99262 0.95279 0.89256 0.90984 0.89593 0.91967 0.81712 0.89979 0.89937 0.89795 0.94065 0.92840 0.93579 0.88472 0.95850 0.92984 0.92277 0.92632 0.92622 0.93912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.10 9.84 36.00 0.35 -0.75 16 2 C -0.17 -2.44 5.93 -104.15 -0.62 -3.05 16 3 C 0.14 1.82 10.99 -17.29 -0.19 1.63 16 4 N -0.53 -7.63 10.33 -10.81 -0.11 -7.74 16 5 C 0.31 4.74 7.64 -157.24 -1.20 3.54 16 6 C -0.08 -0.93 10.32 36.00 0.37 -0.56 16 7 N -0.54 -9.39 9.81 -9.97 -0.10 -9.49 16 8 C 0.36 6.06 5.29 -154.77 -0.82 5.24 16 9 N -0.49 -8.89 3.72 -173.05 -0.64 -9.54 16 10 C 0.07 1.32 5.28 -3.83 -0.02 1.30 16 11 C -0.10 -2.39 5.12 -26.65 -0.14 -2.52 16 12 C 0.05 1.17 2.16 -91.65 -0.20 0.97 16 13 C -0.51 -13.80 8.56 -34.44 -0.29 -14.10 16 14 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 15 C 0.06 1.68 5.31 -17.82 -0.09 1.59 16 16 N -0.89 -25.18 11.37 55.43 0.63 -24.55 16 17 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 C -0.11 -2.17 5.32 -26.65 -0.14 -2.31 16 22 C 0.07 1.24 5.27 -3.84 -0.02 1.22 16 23 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.09 1.14 7.56 -51.93 -0.39 0.74 16 25 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 26 H 0.17 1.48 8.06 -52.48 -0.42 1.06 16 27 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.08 0.80 8.14 -51.92 -0.42 0.37 16 29 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.04 0.89 8.06 -51.93 -0.42 0.47 16 31 H 0.05 1.03 8.10 -51.93 -0.42 0.61 16 32 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.10 2.52 6.17 -51.93 -0.32 2.20 16 34 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 36 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.06 0.95 8.10 -51.93 -0.42 0.52 16 39 H 0.04 0.85 8.05 -51.93 -0.42 0.43 16 LS Contribution 316.51 15.07 4.77 4.77 Total: -1.00 -29.34 316.51 -9.64 -38.98 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -6.16 Total: -0.68 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: -3.01 Total: -7.81 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: -0.22 Total: -51.31 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.34 -9.64 -38.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566485038.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.571 kcal (2) G-P(sol) polarization free energy of solvation -29.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds