Wall clock time and date at job start Mon Mar 30 2020 06:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38118 * 120.40610 * 2 1 4 4 C 1.39623 * 118.33801 * 179.97438 * 3 2 1 5 5 N 1.38536 * 120.53176 * 180.29528 * 4 3 2 6 6 C 1.46504 * 120.00120 * 359.72569 * 5 4 3 7 7 H 1.08999 * 110.01703 * 326.38733 * 6 5 4 8 8 C 1.54262 * 110.03125 * 87.83269 * 6 5 4 9 9 C 1.54885 * 104.19836 * 95.67571 * 8 6 5 10 10 C 1.54887 * 102.74988 * 37.94119 * 9 8 6 11 11 H 1.09004 * 110.59969 * 80.79285 * 10 9 8 12 12 C 1.50703 * 110.48903 * 203.38115 * 10 9 8 13 13 H 1.07998 * 119.99687 * 114.77501 * 12 10 9 14 14 C 1.37870 * 119.99709 * 294.77212 * 12 10 9 15 15 N 1.31516 * 120.00355 * 0.02562 * 14 12 10 16 16 Si 1.86802 * 119.99731 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47148 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47434 * 120.00308 * 16 14 12 19 19 H 1.48503 * 109.47166 * 240.00141 * 16 14 12 20 20 C 1.53871 * 110.03311 * 204.99800 * 6 5 4 21 21 N 1.32994 * 118.93308 * 0.02635 * 4 3 2 22 22 C 1.31740 * 120.68799 * 359.97438 * 21 4 3 23 23 C 1.50708 * 119.08311 * 180.02562 * 22 21 4 24 24 N 1.31787 * 121.83817 * 359.97438 * 22 21 4 25 25 H 1.09000 * 109.47100 * 270.02466 * 1 2 3 26 26 H 1.09003 * 109.46536 * 30.01866 * 1 2 3 27 27 H 1.08996 * 109.46957 * 150.01823 * 1 2 3 28 28 H 1.08002 * 120.82959 * 359.97438 * 3 2 1 29 29 H 0.97004 * 120.00167 * 179.72193 * 5 4 3 30 30 H 1.09002 * 110.48945 * 214.35354 * 8 6 5 31 31 H 1.08996 * 110.48963 * 336.99547 * 8 6 5 32 32 H 1.09002 * 110.75508 * 279.62540 * 9 8 6 33 33 H 1.09000 * 110.75928 * 156.25440 * 9 8 6 34 34 H 0.97002 * 119.99830 * 179.97438 * 15 14 12 35 35 H 1.09002 * 110.03613 * 0.02562 * 20 6 5 36 36 H 1.09000 * 110.03460 * 121.42751 * 20 6 5 37 37 H 1.08997 * 109.46819 * 90.00053 * 23 22 21 38 38 H 1.08996 * 109.47066 * 209.99733 * 23 22 21 39 39 H 1.09001 * 109.46623 * 329.99707 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2061 1.1912 0.0000 4 6 3.6014 1.1408 0.0005 5 7 4.3478 2.3079 0.0067 6 6 3.6736 3.6086 0.0067 7 1 2.7473 3.5487 -0.5647 8 6 3.3751 4.0491 1.4546 9 6 4.5647 4.9694 1.8246 10 6 4.8275 5.7357 0.5045 11 1 4.1253 6.5621 0.3944 12 6 6.2464 6.2417 0.4618 13 1 6.9346 5.8577 -0.2766 14 6 6.6658 7.1949 1.3653 15 7 5.8278 7.6622 2.2648 16 14 8.4247 7.8216 1.3129 17 1 9.1600 7.1416 0.2164 18 1 8.4212 9.2869 1.0716 19 1 9.0912 7.5350 2.6086 20 6 4.5971 4.6809 -0.5975 21 7 4.2024 -0.0456 0.0005 22 6 3.4956 -1.1573 0.0005 23 6 4.2140 -2.4821 0.0010 24 7 2.1778 -1.1433 0.0010 25 1 -0.3633 0.0004 1.0277 26 1 -0.3632 0.8899 -0.5142 27 1 -0.3633 -0.8901 -0.5135 28 1 1.6863 2.1380 -0.0004 29 1 5.3168 2.2639 0.0111 30 1 2.4368 4.6020 1.4995 31 1 3.3414 3.1844 2.1172 32 1 5.4359 4.3792 2.1087 33 1 4.2867 5.6583 2.6222 34 1 6.1230 8.3326 2.9007 35 1 5.5467 4.2336 -0.8911 36 1 4.1186 5.1420 -1.4615 37 1 4.3868 -2.8013 1.0288 38 1 3.6050 -3.2259 -0.5128 39 1 5.1697 -2.3773 -0.5125 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590711716.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:50 Heat of formation + Delta-G solvation = 27.296638 kcal Electronic energy + Delta-G solvation = -19259.921927 eV Core-core repulsion = 16394.462200 eV Total energy + Delta-G solvation = -2865.459727 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.82805 -38.13259 -35.04714 -34.16557 -32.51415 -30.88537 -29.10737 -28.32802 -27.67517 -26.97889 -24.01983 -22.18598 -21.98416 -19.54132 -19.38257 -17.73317 -16.84783 -16.24911 -15.34254 -15.12397 -14.80554 -14.63468 -14.35227 -13.90292 -13.40312 -12.98709 -12.85046 -12.80986 -12.47594 -12.38466 -12.22089 -11.77807 -11.45603 -11.08451 -10.95182 -10.61493 -10.59646 -10.44980 -10.32569 -10.03723 -9.67325 -9.36995 -9.31159 -9.01163 -8.87620 -8.42507 -7.82991 -6.06870 -4.09925 1.21204 1.59088 3.26029 3.26285 3.34848 3.38215 4.00136 4.13463 4.39587 4.45572 4.89837 5.20610 5.24414 5.28723 5.35586 5.46246 5.46494 5.51288 5.55454 5.57278 5.66900 5.78628 5.95616 5.98832 6.13983 6.24374 6.40587 6.50696 6.60768 6.62572 6.84371 6.97368 7.14908 7.22877 7.57003 7.62383 7.78803 7.86790 7.94941 8.36321 8.50961 8.92660 9.54814 11.02625 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.033479 B = 0.004204 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.140850 B = 6659.126718 C = 7168.050468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.198 3.802 3 C -0.302 4.302 4 C 0.447 3.553 5 N -0.690 5.690 6 C 0.144 3.856 7 H 0.072 0.928 8 C -0.143 4.143 9 C -0.098 4.098 10 C 0.048 3.952 11 H 0.034 0.966 12 C -0.515 4.515 13 H 0.056 0.944 14 C 0.063 3.937 15 N -0.889 5.889 16 Si 0.889 3.111 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.123 4.123 21 N -0.588 5.588 22 C 0.358 3.642 23 C -0.081 4.081 24 N -0.573 5.573 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.140 0.860 29 H 0.408 0.592 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.047 0.953 33 H 0.068 0.932 34 H 0.259 0.741 35 H 0.064 0.936 36 H 0.056 0.944 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.240 -13.745 -3.811 16.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.056 3.944 3 C -0.330 4.330 4 C 0.202 3.798 5 N -0.320 5.320 6 C 0.040 3.960 7 H 0.090 0.910 8 C -0.182 4.182 9 C -0.137 4.137 10 C 0.030 3.970 11 H 0.052 0.948 12 C -0.553 4.553 13 H 0.074 0.926 14 C -0.139 4.139 15 N -0.527 5.527 16 Si 0.717 3.283 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.211 1.211 20 C -0.161 4.161 21 N -0.315 5.315 22 C 0.088 3.912 23 C -0.140 4.140 24 N -0.295 5.295 25 H 0.099 0.901 26 H 0.095 0.905 27 H 0.097 0.903 28 H 0.158 0.842 29 H 0.245 0.755 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.903 -14.219 -3.677 16.678 hybrid contribution 0.978 1.348 0.150 1.672 sum -6.925 -12.871 -3.528 15.036 Atomic orbital electron populations 1.20710 0.88485 1.03482 1.03275 1.21291 0.96898 0.87771 0.88411 1.21959 0.93799 1.00649 1.16589 1.18635 0.88581 0.86673 0.85918 1.45072 1.09077 1.01967 1.75873 1.21944 0.95731 0.80962 0.97380 0.91009 1.22961 1.00642 0.99654 0.94899 1.22446 0.94017 0.96308 1.00895 1.19478 0.96933 0.91853 0.88767 0.94775 1.21197 0.95953 1.22300 1.15885 0.92623 1.24971 0.97252 0.96205 0.95431 1.69960 1.34582 1.29631 1.18522 0.86590 0.85167 0.78663 0.77903 1.19801 1.21042 1.21059 1.22618 0.97711 0.96026 0.99709 1.67778 1.41465 0.97486 1.24743 1.22801 0.86564 0.93548 0.88272 1.20501 0.99788 0.90167 1.03511 1.68057 1.09232 1.29931 1.22305 0.90058 0.90488 0.90330 0.84212 0.75510 0.91774 0.92966 0.93376 0.91339 0.93084 0.91739 0.92541 0.89964 0.89940 0.89962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.98 10.21 36.01 0.37 -0.61 16 2 C 0.20 2.73 6.82 -82.32 -0.56 2.16 16 3 C -0.30 -4.41 8.97 -39.11 -0.35 -4.76 16 4 C 0.45 7.29 7.71 -154.78 -1.19 6.10 16 5 N -0.69 -11.22 5.18 -52.70 -0.27 -11.50 16 6 C 0.14 2.37 2.95 -66.81 -0.20 2.18 16 7 H 0.07 1.06 6.47 -51.93 -0.34 0.73 16 8 C -0.14 -2.52 6.54 -25.08 -0.16 -2.69 16 9 C -0.10 -2.17 5.75 -24.74 -0.14 -2.31 16 10 C 0.05 1.12 2.72 -90.11 -0.25 0.88 16 11 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 12 C -0.52 -13.56 8.46 -34.44 -0.29 -13.85 16 13 H 0.06 1.45 7.54 -52.49 -0.40 1.06 16 14 C 0.06 1.71 5.35 -17.82 -0.10 1.61 16 15 N -0.89 -24.87 12.29 55.43 0.68 -24.19 16 16 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 17 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 C -0.12 -2.31 6.13 -25.61 -0.16 -2.47 16 21 N -0.59 -9.71 10.37 -9.97 -0.10 -9.81 16 22 C 0.36 5.32 7.64 -157.24 -1.20 4.12 16 23 C -0.08 -0.86 10.32 36.01 0.37 -0.49 16 24 N -0.57 -8.53 10.27 -7.07 -0.07 -8.60 16 25 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.08 0.62 8.09 -51.93 -0.42 0.20 16 27 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.14 1.84 6.35 -52.49 -0.33 1.51 16 29 H 0.41 6.74 8.44 -40.82 -0.34 6.40 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.05 0.91 8.04 -51.93 -0.42 0.50 16 32 H 0.05 1.11 8.05 -51.93 -0.42 0.70 16 33 H 0.07 1.66 7.55 -51.93 -0.39 1.27 16 34 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 35 H 0.06 1.24 7.13 -51.93 -0.37 0.87 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 319.66 15.07 4.82 4.82 Total: -1.00 -29.15 319.66 -9.78 -38.92 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -5.95 Total: 4.64 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: -3.86 Total: -10.14 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: 0.23 Total: -54.10 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.15 -9.78 -38.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590711716.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.219 kcal (2) G-P(sol) polarization free energy of solvation -29.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds