Wall clock time and date at job start Mon Mar 30 2020 06:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38118 * 120.40610 * 2 1 4 4 C 1.39623 * 118.33801 * 179.97438 * 3 2 1 5 5 N 1.38536 * 120.53176 * 180.29528 * 4 3 2 6 6 C 1.46504 * 120.00120 * 359.72569 * 5 4 3 7 7 H 1.08999 * 110.01703 * 326.38733 * 6 5 4 8 8 C 1.54262 * 110.03125 * 87.83269 * 6 5 4 9 9 C 1.54885 * 104.19836 * 95.67571 * 8 6 5 10 10 C 1.54887 * 102.74988 * 37.94119 * 9 8 6 11 11 H 1.09004 * 110.59969 * 80.79285 * 10 9 8 12 12 C 1.50703 * 110.48903 * 203.38115 * 10 9 8 13 13 H 1.07998 * 119.99687 * 114.77501 * 12 10 9 14 14 C 1.37870 * 119.99709 * 294.77212 * 12 10 9 15 15 N 1.31516 * 120.00355 * 0.02562 * 14 12 10 16 16 Si 1.86802 * 119.99731 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47148 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47434 * 120.00308 * 16 14 12 19 19 H 1.48503 * 109.47166 * 240.00141 * 16 14 12 20 20 C 1.53871 * 110.03311 * 204.99800 * 6 5 4 21 21 N 1.32994 * 118.93308 * 0.02635 * 4 3 2 22 22 C 1.31740 * 120.68799 * 359.97438 * 21 4 3 23 23 C 1.50708 * 119.08311 * 180.02562 * 22 21 4 24 24 N 1.31787 * 121.83817 * 359.97438 * 22 21 4 25 25 H 1.09000 * 109.47100 * 270.02466 * 1 2 3 26 26 H 1.09003 * 109.46536 * 30.01866 * 1 2 3 27 27 H 1.08996 * 109.46957 * 150.01823 * 1 2 3 28 28 H 1.08002 * 120.82959 * 359.97438 * 3 2 1 29 29 H 0.97004 * 120.00167 * 179.72193 * 5 4 3 30 30 H 1.09002 * 110.48945 * 214.35354 * 8 6 5 31 31 H 1.08996 * 110.48963 * 336.99547 * 8 6 5 32 32 H 1.09002 * 110.75508 * 279.62540 * 9 8 6 33 33 H 1.09000 * 110.75928 * 156.25440 * 9 8 6 34 34 H 0.97002 * 119.99830 * 179.97438 * 15 14 12 35 35 H 1.09002 * 110.03613 * 0.02562 * 20 6 5 36 36 H 1.09000 * 110.03460 * 121.42751 * 20 6 5 37 37 H 1.08997 * 109.46819 * 90.00053 * 23 22 21 38 38 H 1.08996 * 109.47066 * 209.99733 * 23 22 21 39 39 H 1.09001 * 109.46623 * 329.99707 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2061 1.1912 0.0000 4 6 3.6014 1.1408 0.0005 5 7 4.3478 2.3079 0.0067 6 6 3.6736 3.6086 0.0067 7 1 2.7473 3.5487 -0.5647 8 6 3.3751 4.0491 1.4546 9 6 4.5647 4.9694 1.8246 10 6 4.8275 5.7357 0.5045 11 1 4.1253 6.5621 0.3944 12 6 6.2464 6.2417 0.4618 13 1 6.9346 5.8577 -0.2766 14 6 6.6658 7.1949 1.3653 15 7 5.8278 7.6622 2.2648 16 14 8.4247 7.8216 1.3129 17 1 9.1600 7.1416 0.2164 18 1 8.4212 9.2869 1.0716 19 1 9.0912 7.5350 2.6086 20 6 4.5971 4.6809 -0.5975 21 7 4.2024 -0.0456 0.0005 22 6 3.4956 -1.1573 0.0005 23 6 4.2140 -2.4821 0.0010 24 7 2.1778 -1.1433 0.0010 25 1 -0.3633 0.0004 1.0277 26 1 -0.3632 0.8899 -0.5142 27 1 -0.3633 -0.8901 -0.5135 28 1 1.6863 2.1380 -0.0004 29 1 5.3168 2.2639 0.0111 30 1 2.4368 4.6020 1.4995 31 1 3.3414 3.1844 2.1172 32 1 5.4359 4.3792 2.1087 33 1 4.2867 5.6583 2.6222 34 1 6.1230 8.3326 2.9007 35 1 5.5467 4.2336 -0.8911 36 1 4.1186 5.1420 -1.4615 37 1 4.3868 -2.8013 1.0288 38 1 3.6050 -3.2259 -0.5128 39 1 5.1697 -2.3773 -0.5125 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590711716.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:49 Heat of formation + Delta-G solvation = 11.268333 kcal Electronic energy + Delta-G solvation = -19260.616967 eV Core-core repulsion = 16394.462200 eV Total energy + Delta-G solvation = -2866.154767 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.93846 -39.59225 -36.44458 -35.22963 -34.31322 -32.21463 -30.02890 -29.93015 -28.75266 -28.49037 -25.87033 -23.39313 -23.00674 -21.14545 -20.91172 -18.94545 -18.58152 -17.65993 -16.66770 -16.42658 -16.20193 -16.06059 -15.85241 -15.02720 -14.67296 -14.23977 -14.15497 -13.79133 -13.74475 -13.50628 -13.23681 -12.99292 -12.98049 -12.78373 -12.65062 -12.37987 -12.14100 -11.82742 -11.65970 -11.48392 -11.43458 -11.08114 -10.82903 -10.50855 -10.43369 -10.14387 -9.04341 -8.13139 -6.21717 0.13775 0.45352 1.38286 1.41436 1.51312 2.04756 2.42570 2.90563 3.18548 3.19251 3.43164 3.78878 3.90096 3.96522 4.12937 4.30132 4.44187 4.56778 4.68312 4.71790 4.74972 4.76355 4.81646 4.85955 4.95449 5.02290 5.03957 5.09256 5.16112 5.21864 5.26979 5.41172 5.59641 5.64883 5.85818 5.92357 5.98573 6.36763 6.38697 6.63035 6.89378 7.39033 7.45869 8.95661 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.033479 B = 0.004204 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.140850 B = 6659.126718 C = 7168.050468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.192 3.808 3 C -0.309 4.309 4 C 0.430 3.570 5 N -0.695 5.695 6 C 0.159 3.841 7 H 0.100 0.900 8 C -0.128 4.128 9 C -0.091 4.091 10 C 0.040 3.960 11 H 0.009 0.991 12 C -0.530 4.530 13 H 0.052 0.948 14 C 0.014 3.986 15 N -0.918 5.918 16 Si 0.948 3.052 17 H -0.267 1.267 18 H -0.281 1.281 19 H -0.284 1.284 20 C -0.113 4.113 21 N -0.611 5.611 22 C 0.343 3.657 23 C -0.078 4.078 24 N -0.583 5.583 25 H 0.094 0.906 26 H 0.096 0.904 27 H 0.085 0.915 28 H 0.156 0.844 29 H 0.403 0.597 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.027 0.973 33 H 0.038 0.962 34 H 0.259 0.741 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.247 -15.024 -4.589 18.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.051 3.949 3 C -0.337 4.337 4 C 0.186 3.814 5 N -0.325 5.325 6 C 0.055 3.945 7 H 0.118 0.882 8 C -0.167 4.167 9 C -0.130 4.130 10 C 0.021 3.979 11 H 0.027 0.973 12 C -0.568 4.568 13 H 0.071 0.929 14 C -0.185 4.185 15 N -0.558 5.558 16 Si 0.774 3.226 17 H -0.192 1.192 18 H -0.207 1.207 19 H -0.210 1.210 20 C -0.151 4.151 21 N -0.338 5.338 22 C 0.074 3.926 23 C -0.136 4.136 24 N -0.305 5.305 25 H 0.112 0.888 26 H 0.114 0.886 27 H 0.104 0.896 28 H 0.173 0.827 29 H 0.239 0.761 30 H 0.099 0.901 31 H 0.074 0.926 32 H 0.046 0.954 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.112 0.888 38 H 0.116 0.884 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.918 -15.522 -4.467 18.451 hybrid contribution 1.267 1.700 0.396 2.157 sum -7.651 -13.822 -4.072 16.315 Atomic orbital electron populations 1.20825 0.85527 1.04807 1.04439 1.21983 0.98842 0.87217 0.86900 1.22168 0.93098 1.01754 1.16701 1.18873 0.89402 0.86567 0.86536 1.44968 1.08826 1.01988 1.76696 1.21728 0.96030 0.80417 0.96356 0.88215 1.22838 0.99203 0.98811 0.95869 1.22205 0.95213 0.96196 0.99348 1.19452 0.94814 0.92458 0.91179 0.97285 1.21600 0.97491 1.22213 1.15475 0.92931 1.25700 1.00799 0.96696 0.95320 1.70076 1.36195 1.30253 1.19229 0.85659 0.80956 0.78117 0.77846 1.19173 1.20681 1.21012 1.22442 0.98396 0.95539 0.98757 1.67805 1.42296 0.98058 1.25642 1.23562 0.87042 0.94421 0.87580 1.20616 0.99889 0.88596 1.04537 1.68186 1.09266 1.30509 1.22514 0.88765 0.88559 0.89642 0.82677 0.76062 0.90103 0.92566 0.95363 0.94329 0.93190 0.92261 0.91018 0.88777 0.88418 0.89462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.58 10.21 71.24 0.73 -0.85 16 2 C 0.19 4.83 6.82 42.42 0.29 5.12 16 3 C -0.31 -8.32 8.97 22.58 0.20 -8.12 16 4 C 0.43 13.43 7.71 133.16 1.03 14.45 16 5 N -0.69 -21.81 5.18 -320.65 -1.66 -23.47 16 6 C 0.16 4.95 2.95 45.71 0.13 5.09 16 7 H 0.10 2.62 6.47 -2.39 -0.02 2.61 16 8 C -0.13 -4.39 6.54 31.67 0.21 -4.18 16 9 C -0.09 -4.10 5.75 31.88 0.18 -3.92 16 10 C 0.04 1.87 2.72 -10.46 -0.03 1.84 16 11 H 0.01 0.46 8.14 -2.38 -0.02 0.45 16 12 C -0.53 -28.31 8.46 25.60 0.22 -28.09 16 13 H 0.05 2.77 7.54 -2.91 -0.02 2.75 16 14 C 0.01 0.75 5.35 84.65 0.45 1.20 16 15 N -0.92 -52.59 12.29 21.44 0.26 -52.32 16 16 Si 0.95 43.31 29.54 68.60 2.03 45.33 16 17 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 18 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 19 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 20 C -0.11 -4.18 6.13 31.32 0.19 -3.99 16 21 N -0.61 -19.58 10.37 -185.44 -1.92 -21.50 16 22 C 0.34 9.71 7.64 138.77 1.06 10.78 16 23 C -0.08 -1.53 10.32 71.24 0.74 -0.79 16 24 N -0.58 -16.20 10.27 -176.27 -1.81 -18.01 16 25 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.10 1.18 8.09 -2.39 -0.02 1.16 16 27 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.16 3.57 6.35 -2.91 -0.02 3.55 16 29 H 0.40 13.21 8.44 -92.71 -0.78 12.43 16 30 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 31 H 0.06 1.89 8.04 -2.39 -0.02 1.87 16 32 H 0.03 1.33 8.05 -2.39 -0.02 1.32 16 33 H 0.04 1.93 7.55 -2.39 -0.02 1.91 16 34 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 35 H 0.06 2.25 7.13 -2.39 -0.02 2.23 16 36 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 37 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.10 1.58 8.14 -2.39 -0.02 1.57 16 39 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -63.37 319.66 2.56 -60.81 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: 0.26 Total: 20.63 kcal Atomic # 6 Polarization: -16.87 SS G_CDS: 5.40 Total: -11.47 kcal Atomic # 7 Polarization: -110.18 SS G_CDS: -5.13 Total: -115.31 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.33 kcal Total: -63.37 2.56 -60.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590711716.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.080 kcal (2) G-P(sol) polarization free energy of solvation -63.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds