Wall clock time and date at job start Mon Mar 30 2020 07:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50702 * 109.47348 * 2 1 4 4 C 1.38112 * 120.40337 * 125.23196 * 3 2 1 5 5 C 1.39629 * 118.33209 * 180.28002 * 4 3 2 6 6 N 1.38544 * 120.53091 * 179.75880 * 5 4 3 7 7 C 1.46502 * 119.99983 * 359.72370 * 6 5 4 8 8 H 1.08998 * 110.43583 * 323.91261 * 7 6 5 9 9 C 1.54265 * 110.48421 * 86.45654 * 7 6 5 10 10 C 1.53873 * 106.59997 * 142.29132 * 9 7 6 11 11 C 1.54268 * 106.59703 * 359.97438 * 10 9 7 12 12 H 1.09002 * 110.48435 * 95.07241 * 11 10 9 13 13 C 1.50704 * 110.48600 * 217.58396 * 11 10 9 14 14 H 1.08001 * 120.00134 * 116.76106 * 13 11 10 15 15 C 1.37882 * 119.99806 * 296.76016 * 13 11 10 16 16 N 1.31507 * 119.99801 * 359.97438 * 15 13 11 17 17 Si 1.86796 * 119.99760 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47425 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.47113 * 119.99908 * 17 15 13 20 20 H 1.48499 * 109.47357 * 239.99815 * 17 15 13 21 21 C 1.54888 * 110.48532 * 201.23135 * 7 6 5 22 22 N 1.32985 * 118.93682 * 359.49128 * 5 4 3 23 23 C 1.31749 * 120.68827 * 0.24618 * 22 5 4 24 24 N 1.31790 * 121.83198 * 0.02562 * 23 22 5 25 25 H 1.08992 * 109.47577 * 300.00488 * 1 2 3 26 26 H 1.09011 * 109.46733 * 60.00589 * 1 2 3 27 27 H 1.08999 * 109.47199 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47570 * 239.99306 * 2 1 3 29 29 H 1.09005 * 109.47127 * 119.99264 * 2 1 3 30 30 H 1.08001 * 120.83801 * 0.02562 * 4 3 2 31 31 H 0.96998 * 119.99717 * 179.72975 * 6 5 4 32 32 H 1.08993 * 110.03585 * 22.99628 * 9 7 6 33 33 H 1.09006 * 110.07186 * 261.59556 * 9 7 6 34 34 H 1.09002 * 110.03017 * 240.71676 * 10 9 7 35 35 H 1.08996 * 110.07624 * 119.30418 * 10 9 7 36 36 H 0.97003 * 119.99704 * 180.02562 * 16 15 13 37 37 H 1.08992 * 110.76047 * 85.06590 * 21 7 6 38 38 H 1.09000 * 110.75534 * 321.69159 * 21 7 6 39 39 H 1.08001 * 119.08713 * 180.02562 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9132 1.8507 0.9730 5 6 3.3463 3.1776 0.9352 6 7 4.2259 3.6583 1.8916 7 6 4.7044 2.7740 2.9572 8 1 3.9145 2.0901 3.2676 9 6 5.9464 1.9877 2.4892 10 6 6.8894 1.8933 3.7014 11 6 6.1878 2.6261 4.8636 12 1 5.6381 1.9185 5.4842 13 6 7.1928 3.3833 5.6929 14 1 7.1392 4.4602 5.7560 15 6 8.1809 2.7014 6.3710 16 7 8.2458 1.3901 6.2945 17 14 9.4261 3.6399 7.3995 18 1 9.1362 5.0943 7.3225 19 1 9.3386 3.1924 8.8129 20 1 10.7931 3.3791 6.8815 21 6 5.2119 3.6034 4.1628 22 7 2.9052 3.9710 -0.0366 23 6 2.0691 3.5170 -0.9479 24 7 1.6377 2.2717 -0.9366 25 1 -0.3634 0.5139 0.8898 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 3.2553 1.1786 1.7461 31 1 4.5248 4.5804 1.8558 32 1 6.4384 2.5176 1.6737 33 1 5.6559 0.9889 2.1634 34 1 7.8391 2.3776 3.4742 35 1 7.0567 0.8490 3.9648 36 1 8.9407 0.9103 6.7719 37 1 4.3873 3.8671 4.8249 38 1 5.7372 4.4963 3.8237 39 1 1.7276 4.1838 -1.7258 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590711730.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:34 Heat of formation + Delta-G solvation = 23.772430 kcal Electronic energy + Delta-G solvation = -19143.471771 eV Core-core repulsion = 16277.859223 eV Total energy + Delta-G solvation = -2865.612549 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.82679 -38.05703 -35.44792 -34.36317 -32.41625 -31.16960 -30.14804 -28.29373 -26.97165 -24.69001 -24.32958 -23.31111 -21.36215 -19.98133 -19.19003 -17.81377 -17.04684 -16.18610 -15.46248 -15.08321 -14.84262 -14.79608 -14.67395 -14.24170 -13.86855 -13.68340 -12.66678 -12.63793 -12.48581 -11.96616 -11.72929 -11.63761 -11.30833 -11.18351 -10.98568 -10.59783 -10.53378 -10.46207 -10.33086 -10.11764 -9.67918 -9.57085 -9.32070 -9.04223 -8.83022 -8.45724 -7.89564 -6.08241 -4.11337 1.19299 1.53482 3.21934 3.25473 3.34178 3.37688 4.02415 4.19719 4.38661 4.44531 4.84836 5.05375 5.15817 5.22000 5.22266 5.28098 5.40704 5.51872 5.63012 5.70217 5.72675 5.80853 5.97129 6.06210 6.14758 6.26712 6.36737 6.49325 6.54018 6.61116 6.79152 6.93195 7.12490 7.19928 7.48698 7.61963 7.76908 7.80183 7.92418 8.35439 8.43828 8.91350 9.53426 11.01471 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.038497 B = 0.003906 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.156613 B = 7166.914671 C = 7610.621712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.074 4.074 3 C 0.199 3.801 4 C -0.291 4.291 5 C 0.443 3.557 6 N -0.695 5.695 7 C 0.139 3.861 8 H 0.081 0.919 9 C -0.139 4.139 10 C -0.096 4.096 11 C 0.052 3.948 12 H 0.033 0.967 13 C -0.516 4.516 14 H 0.057 0.943 15 C 0.063 3.937 16 N -0.888 5.888 17 Si 0.889 3.111 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.118 4.118 22 N -0.591 5.591 23 C 0.335 3.665 24 N -0.571 5.571 25 H 0.051 0.949 26 H 0.066 0.934 27 H 0.058 0.942 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.141 0.859 31 H 0.406 0.594 32 H 0.055 0.945 33 H 0.050 0.950 34 H 0.053 0.947 35 H 0.058 0.942 36 H 0.260 0.740 37 H 0.055 0.945 38 H 0.064 0.936 39 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.416 -1.124 -11.077 15.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.112 4.112 3 C 0.058 3.942 4 C -0.319 4.319 5 C 0.198 3.802 6 N -0.324 5.324 7 C 0.035 3.965 8 H 0.099 0.901 9 C -0.178 4.178 10 C -0.134 4.134 11 C 0.033 3.967 12 H 0.051 0.949 13 C -0.554 4.554 14 H 0.075 0.925 15 C -0.139 4.139 16 N -0.526 5.526 17 Si 0.718 3.282 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.211 1.211 21 C -0.157 4.157 22 N -0.317 5.317 23 C 0.045 3.955 24 N -0.291 5.291 25 H 0.070 0.930 26 H 0.085 0.915 27 H 0.077 0.923 28 H 0.103 0.897 29 H 0.099 0.901 30 H 0.159 0.841 31 H 0.242 0.758 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -11.531 -0.836 -11.512 16.315 hybrid contribution 1.302 0.322 1.185 1.789 sum -10.229 -0.514 -10.327 14.545 Atomic orbital electron populations 1.21638 0.93935 1.01657 1.02663 1.20506 0.97087 0.90217 1.03392 1.21291 0.89111 0.95748 0.88063 1.22053 1.07297 0.96969 1.05571 1.18662 0.86117 0.88818 0.86587 1.44995 1.45857 1.14898 1.26695 1.22245 0.95703 0.92217 0.86355 0.90123 1.22736 0.96460 0.98527 1.00045 1.22083 0.97246 1.01305 0.92814 1.19406 0.92368 0.92527 0.92406 0.94906 1.21145 1.12298 0.93204 1.28747 0.92526 1.24973 0.97684 0.94844 0.96407 1.69968 1.33719 1.06281 1.42673 0.86577 0.81339 0.80195 0.80138 1.19788 1.21028 1.21050 1.22856 0.99322 0.99246 0.94237 1.67959 1.18388 1.38874 1.06453 1.24521 0.87564 0.90078 0.93318 1.68151 1.29390 1.04545 1.27026 0.92953 0.91517 0.92312 0.89718 0.90090 0.84115 0.75828 0.92653 0.93099 0.92769 0.92353 0.93055 0.92608 0.91741 0.79380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.78 37.16 0.36 -0.93 16 2 C -0.07 -0.75 6.36 -27.88 -0.18 -0.92 16 3 C 0.20 2.64 6.20 -82.33 -0.51 2.12 16 4 C -0.29 -4.14 8.92 -39.11 -0.35 -4.49 16 5 C 0.44 6.80 7.71 -154.78 -1.19 5.61 16 6 N -0.70 -10.54 5.27 -52.18 -0.27 -10.82 16 7 C 0.14 2.27 2.82 -66.27 -0.19 2.08 16 8 H 0.08 1.27 6.65 -51.93 -0.35 0.92 16 9 C -0.14 -2.44 6.54 -25.61 -0.17 -2.61 16 10 C -0.10 -2.09 5.50 -25.61 -0.14 -2.23 16 11 C 0.05 1.20 2.75 -90.12 -0.25 0.95 16 12 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 13 C -0.52 -13.50 8.39 -34.44 -0.29 -13.79 16 14 H 0.06 1.47 7.78 -52.49 -0.41 1.06 16 15 C 0.06 1.68 5.34 -17.82 -0.10 1.59 16 16 N -0.89 -24.66 12.48 55.43 0.69 -23.97 16 17 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 18 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 C -0.12 -2.22 5.89 -24.75 -0.15 -2.36 16 22 N -0.59 -8.92 10.47 -13.81 -0.14 -9.06 16 23 C 0.34 4.44 12.28 -92.20 -1.13 3.31 16 24 N -0.57 -7.80 10.03 -10.88 -0.11 -7.91 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.66 7.98 -51.92 -0.41 0.24 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.08 0.73 7.93 -51.93 -0.41 0.31 16 30 H 0.14 1.89 6.36 -52.49 -0.33 1.56 16 31 H 0.41 5.91 8.65 -40.82 -0.35 5.55 16 32 H 0.05 0.97 8.04 -51.93 -0.42 0.55 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.05 1.28 7.83 -51.93 -0.41 0.87 16 35 H 0.06 1.36 7.99 -51.93 -0.41 0.95 16 36 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.06 1.21 7.94 -51.93 -0.41 0.79 16 39 H 0.19 1.81 8.06 -52.49 -0.42 1.39 16 LS Contribution 319.94 15.07 4.82 4.82 Total: -1.00 -28.28 319.94 -10.32 -38.60 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -6.01 Total: 4.31 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -4.27 Total: -11.67 kcal Atomic # 7 Polarization: -51.92 SS G_CDS: 0.16 Total: -51.76 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -28.28 -10.32 -38.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590711730.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.375 kcal (2) G-P(sol) polarization free energy of solvation -28.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds