Wall clock time and date at job start Mon Mar 30 2020 07:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50702 * 109.47348 * 2 1 4 4 C 1.38112 * 120.40337 * 125.23196 * 3 2 1 5 5 C 1.39629 * 118.33209 * 180.28002 * 4 3 2 6 6 N 1.38544 * 120.53091 * 179.75880 * 5 4 3 7 7 C 1.46502 * 119.99983 * 359.72370 * 6 5 4 8 8 H 1.08998 * 110.43583 * 323.91261 * 7 6 5 9 9 C 1.54265 * 110.48421 * 86.45654 * 7 6 5 10 10 C 1.53873 * 106.59997 * 142.29132 * 9 7 6 11 11 C 1.54268 * 106.59703 * 359.97438 * 10 9 7 12 12 H 1.09002 * 110.48435 * 95.07241 * 11 10 9 13 13 C 1.50704 * 110.48600 * 217.58396 * 11 10 9 14 14 H 1.08001 * 120.00134 * 116.76106 * 13 11 10 15 15 C 1.37882 * 119.99806 * 296.76016 * 13 11 10 16 16 N 1.31507 * 119.99801 * 359.97438 * 15 13 11 17 17 Si 1.86796 * 119.99760 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47425 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.47113 * 119.99908 * 17 15 13 20 20 H 1.48499 * 109.47357 * 239.99815 * 17 15 13 21 21 C 1.54888 * 110.48532 * 201.23135 * 7 6 5 22 22 N 1.32985 * 118.93682 * 359.49128 * 5 4 3 23 23 C 1.31749 * 120.68827 * 0.24618 * 22 5 4 24 24 N 1.31790 * 121.83198 * 0.02562 * 23 22 5 25 25 H 1.08992 * 109.47577 * 300.00488 * 1 2 3 26 26 H 1.09011 * 109.46733 * 60.00589 * 1 2 3 27 27 H 1.08999 * 109.47199 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47570 * 239.99306 * 2 1 3 29 29 H 1.09005 * 109.47127 * 119.99264 * 2 1 3 30 30 H 1.08001 * 120.83801 * 0.02562 * 4 3 2 31 31 H 0.96998 * 119.99717 * 179.72975 * 6 5 4 32 32 H 1.08993 * 110.03585 * 22.99628 * 9 7 6 33 33 H 1.09006 * 110.07186 * 261.59556 * 9 7 6 34 34 H 1.09002 * 110.03017 * 240.71676 * 10 9 7 35 35 H 1.08996 * 110.07624 * 119.30418 * 10 9 7 36 36 H 0.97003 * 119.99704 * 180.02562 * 16 15 13 37 37 H 1.08992 * 110.76047 * 85.06590 * 21 7 6 38 38 H 1.09000 * 110.75534 * 321.69159 * 21 7 6 39 39 H 1.08001 * 119.08713 * 180.02562 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9132 1.8507 0.9730 5 6 3.3463 3.1776 0.9352 6 7 4.2259 3.6583 1.8916 7 6 4.7044 2.7740 2.9572 8 1 3.9145 2.0901 3.2676 9 6 5.9464 1.9877 2.4892 10 6 6.8894 1.8933 3.7014 11 6 6.1878 2.6261 4.8636 12 1 5.6381 1.9185 5.4842 13 6 7.1928 3.3833 5.6929 14 1 7.1392 4.4602 5.7560 15 6 8.1809 2.7014 6.3710 16 7 8.2458 1.3901 6.2945 17 14 9.4261 3.6399 7.3995 18 1 9.1362 5.0943 7.3225 19 1 9.3386 3.1924 8.8129 20 1 10.7931 3.3791 6.8815 21 6 5.2119 3.6034 4.1628 22 7 2.9052 3.9710 -0.0366 23 6 2.0691 3.5170 -0.9479 24 7 1.6377 2.2717 -0.9366 25 1 -0.3634 0.5139 0.8898 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 3.2553 1.1786 1.7461 31 1 4.5248 4.5804 1.8558 32 1 6.4384 2.5176 1.6737 33 1 5.6559 0.9889 2.1634 34 1 7.8391 2.3776 3.4742 35 1 7.0567 0.8490 3.9648 36 1 8.9407 0.9103 6.7719 37 1 4.3873 3.8671 4.8249 38 1 5.7372 4.4963 3.8237 39 1 1.7276 4.1838 -1.7258 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590711730.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:33 Heat of formation + Delta-G solvation = 9.578221 kcal Electronic energy + Delta-G solvation = -19144.087278 eV Core-core repulsion = 16277.859223 eV Total energy + Delta-G solvation = -2866.228056 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.89058 -39.50774 -36.66976 -35.53015 -34.19105 -32.28916 -31.21017 -29.98330 -28.50799 -26.03135 -25.56201 -24.59454 -22.36228 -21.42397 -20.89270 -18.95580 -18.54427 -17.72396 -16.69321 -16.56673 -16.15992 -16.01874 -15.89454 -15.65701 -14.81711 -14.57505 -14.39493 -14.15664 -13.67784 -13.46688 -13.09097 -12.92265 -12.78575 -12.39243 -12.38265 -12.15230 -12.03520 -11.79556 -11.67148 -11.52915 -11.38656 -11.09079 -10.75734 -10.64194 -10.48536 -10.10977 -9.07254 -8.12743 -6.21500 0.16471 0.44294 1.39883 1.42997 1.52989 2.03063 2.43812 2.97427 3.19233 3.28981 3.47369 3.73264 3.89974 3.96353 4.12272 4.23695 4.28664 4.43402 4.59507 4.60628 4.73200 4.77545 4.84128 4.89637 4.98039 5.04518 5.08481 5.11589 5.19987 5.28443 5.39941 5.41803 5.54786 5.66608 5.81683 5.92908 5.97601 6.33263 6.39042 6.63756 6.89437 7.37852 7.46176 8.96355 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.038497 B = 0.003906 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.156613 B = 7166.914671 C = 7610.621712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.075 4.075 3 C 0.196 3.804 4 C -0.302 4.302 5 C 0.429 3.571 6 N -0.695 5.695 7 C 0.158 3.842 8 H 0.092 0.908 9 C -0.126 4.126 10 C -0.086 4.086 11 C 0.042 3.958 12 H 0.008 0.992 13 C -0.531 4.531 14 H 0.054 0.946 15 C 0.014 3.986 16 N -0.917 5.917 17 Si 0.949 3.051 18 H -0.267 1.267 19 H -0.282 1.282 20 H -0.283 1.283 21 C -0.108 4.108 22 N -0.607 5.607 23 C 0.331 3.669 24 N -0.577 5.577 25 H 0.044 0.956 26 H 0.057 0.943 27 H 0.078 0.922 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.147 0.853 31 H 0.408 0.592 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.028 0.972 35 H 0.035 0.965 36 H 0.260 0.740 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.440 -0.955 -12.056 17.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.113 4.113 3 C 0.055 3.945 4 C -0.330 4.330 5 C 0.185 3.815 6 N -0.325 5.325 7 C 0.053 3.947 8 H 0.110 0.890 9 C -0.165 4.165 10 C -0.124 4.124 11 C 0.023 3.977 12 H 0.026 0.974 13 C -0.569 4.569 14 H 0.072 0.928 15 C -0.185 4.185 16 N -0.557 5.557 17 Si 0.776 3.224 18 H -0.191 1.191 19 H -0.208 1.208 20 H -0.209 1.209 21 C -0.146 4.146 22 N -0.332 5.332 23 C 0.041 3.959 24 N -0.297 5.297 25 H 0.063 0.937 26 H 0.076 0.924 27 H 0.097 0.903 28 H 0.113 0.887 29 H 0.112 0.888 30 H 0.165 0.835 31 H 0.244 0.756 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.047 0.953 35 H 0.054 0.946 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -12.574 -0.653 -12.510 17.749 hybrid contribution 1.570 0.255 1.444 2.148 sum -11.003 -0.398 -11.066 15.611 Atomic orbital electron populations 1.21604 0.93191 1.02774 1.01847 1.20636 0.97633 0.88473 1.04509 1.21811 0.88352 0.97007 0.87349 1.22202 1.07858 0.96708 1.06249 1.18830 0.86379 0.89448 0.86810 1.44760 1.46307 1.14760 1.26662 1.21890 0.95348 0.91736 0.85707 0.88992 1.22589 0.96040 0.99935 0.97959 1.21842 0.97044 0.99207 0.94349 1.19383 0.92753 0.93026 0.92568 0.97390 1.21542 1.12963 0.93380 1.29031 0.92772 1.25707 0.99535 0.95633 0.97671 1.70080 1.34449 1.07520 1.43629 0.85636 0.79019 0.79222 0.78566 1.19128 1.20762 1.20902 1.22656 0.98517 0.98404 0.95033 1.67988 1.19092 1.39278 1.06874 1.25208 0.86746 0.90511 0.93401 1.68256 1.29450 1.04823 1.27185 0.93675 0.92366 0.90271 0.88691 0.88837 0.83496 0.75561 0.92356 0.91389 0.95292 0.94641 0.93133 0.91769 0.91732 0.76304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.78 71.98 0.70 -1.48 16 2 C -0.07 -1.32 6.36 29.85 0.19 -1.13 16 3 C 0.20 4.79 6.20 42.42 0.26 5.05 16 4 C -0.30 -8.02 8.92 22.58 0.20 -7.82 16 5 C 0.43 12.45 7.71 133.16 1.03 13.48 16 6 N -0.70 -19.98 5.27 -318.99 -1.68 -21.66 16 7 C 0.16 4.94 2.82 46.07 0.13 5.07 16 8 H 0.09 2.72 6.65 -2.39 -0.02 2.70 16 9 C -0.13 -4.32 6.54 31.32 0.20 -4.11 16 10 C -0.09 -3.80 5.50 31.32 0.17 -3.63 16 11 C 0.04 1.96 2.75 -10.47 -0.03 1.93 16 12 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 13 C -0.53 -28.16 8.39 25.60 0.21 -27.94 16 14 H 0.05 2.82 7.78 -2.91 -0.02 2.80 16 15 C 0.01 0.73 5.34 84.66 0.45 1.18 16 16 N -0.92 -52.01 12.48 21.45 0.27 -51.75 16 17 Si 0.95 42.80 29.54 68.60 2.03 44.83 16 18 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 19 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 20 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 21 C -0.11 -3.97 5.89 31.88 0.19 -3.79 16 22 N -0.61 -17.23 10.47 -197.61 -2.07 -19.30 16 23 C 0.33 8.06 12.28 180.90 2.22 10.28 16 24 N -0.58 -14.56 10.03 -188.34 -1.89 -16.45 16 25 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.06 1.03 7.98 -2.38 -0.02 1.01 16 27 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.09 1.43 7.93 -2.38 -0.02 1.41 16 30 H 0.15 3.63 6.36 -2.91 -0.02 3.61 16 31 H 0.41 11.30 8.65 -92.71 -0.80 10.50 16 32 H 0.06 1.97 8.04 -2.39 -0.02 1.95 16 33 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 34 H 0.03 1.39 7.83 -2.39 -0.02 1.37 16 35 H 0.03 1.69 7.99 -2.39 -0.02 1.67 16 36 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 37 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.06 2.37 7.94 -2.39 -0.02 2.35 16 39 H 0.22 3.64 8.06 -2.91 -0.02 3.61 16 Total: -1.00 -60.58 319.94 2.83 -57.75 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: 0.24 Total: 19.49 kcal Atomic # 6 Polarization: -18.85 SS G_CDS: 5.94 Total: -12.92 kcal Atomic # 7 Polarization: -103.79 SS G_CDS: -5.37 Total: -109.16 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -60.58 2.83 -57.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590711730.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.331 kcal (2) G-P(sol) polarization free energy of solvation -60.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds