Wall clock time and date at job start Mon Mar 30 2020 06:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.50691 * 109.47318 * 90.00113 * 3 2 1 5 5 C 1.38237 * 120.00087 * 269.73144 * 4 3 2 6 6 C 1.38237 * 119.99887 * 179.76622 * 5 4 3 7 7 C 1.38240 * 119.99987 * 0.50242 * 6 5 4 8 8 C 1.38235 * 120.00002 * 359.74667 * 7 6 5 9 9 C 1.38237 * 120.00019 * 0.02562 * 8 7 6 10 10 C 1.34779 * 120.00212 * 180.02562 * 2 1 3 11 11 O 1.21279 * 120.00410 * 179.97438 * 10 2 1 12 12 C 1.50703 * 119.99541 * 359.97438 * 10 2 1 13 13 C 1.53000 * 109.46653 * 179.97438 * 12 10 2 14 14 C 1.52999 * 109.46975 * 179.97438 * 13 12 10 15 15 C 1.50701 * 109.47286 * 180.02562 * 14 13 12 16 16 H 1.07995 * 120.00146 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99991 * 180.02562 * 15 14 13 18 18 N 1.31517 * 119.99978 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99855 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47161 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47329 * 119.99973 * 19 17 15 22 22 H 1.48502 * 109.47019 * 239.99817 * 19 17 15 23 23 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 24 24 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 25 25 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 26 26 H 1.09002 * 109.47278 * 210.00284 * 3 2 1 27 27 H 1.09006 * 109.46998 * 329.99806 * 3 2 1 28 28 H 1.07995 * 119.99731 * 359.97438 * 5 4 3 29 29 H 1.07995 * 120.00222 * 180.22621 * 6 5 4 30 30 H 1.08005 * 119.99922 * 179.72333 * 7 6 5 31 31 H 1.07998 * 120.00124 * 179.97438 * 8 7 6 32 32 H 1.07999 * 120.00129 * 179.97438 * 9 8 7 33 33 H 1.08996 * 109.47057 * 299.99739 * 12 10 2 34 34 H 1.08996 * 109.47084 * 60.00703 * 12 10 2 35 35 H 1.08994 * 109.48028 * 300.00003 * 13 12 10 36 36 H 1.09007 * 109.47101 * 60.00827 * 13 12 10 37 37 H 1.08998 * 109.47634 * 300.00696 * 14 13 12 38 38 H 1.08999 * 109.47136 * 60.00615 * 14 13 12 39 39 H 0.97002 * 119.99338 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 1.4207 5 6 1.5298 2.5065 2.0705 6 6 1.7580 2.9016 3.3754 7 6 2.9100 2.5025 4.0271 8 6 3.8313 1.7040 3.3755 9 6 3.6010 1.3051 2.0722 10 6 2.1389 -1.1672 -0.0005 11 8 3.3517 -1.1672 -0.0010 12 6 1.3854 -2.4723 -0.0005 13 6 2.3796 -3.6352 -0.0018 14 6 1.6147 -4.9602 -0.0012 15 6 2.5939 -6.1057 -0.0018 16 1 3.6557 -5.9084 -0.0022 17 6 2.1343 -7.4056 -0.0019 18 7 0.8413 -7.6459 -0.0010 19 14 3.3482 -8.8254 -0.0020 20 1 4.7341 -8.2919 -0.0025 21 1 3.1378 -9.6567 1.2104 22 1 3.1378 -9.6565 -1.2145 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3633 0.8900 0.5139 25 1 -0.3633 -0.8900 0.5139 26 1 3.1499 1.1384 -0.5139 27 1 1.6084 2.0284 -0.5139 28 1 0.6321 2.8221 1.5598 29 1 1.0384 3.5257 3.8844 30 1 3.0904 2.8149 5.0451 31 1 4.7316 1.3926 3.8844 32 1 4.3209 0.6816 1.5630 33 1 0.7591 -2.5302 0.8897 34 1 0.7585 -2.5298 -0.8903 35 1 3.0057 -3.5772 -0.8922 36 1 3.0069 -3.5779 0.8878 37 1 0.9889 -5.0181 0.8894 38 1 0.9871 -5.0178 -0.8905 39 1 0.5180 -8.5605 -0.0007 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593933513.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:02 Heat of formation + Delta-G solvation = -28.377616 kcal Electronic energy + Delta-G solvation = -18816.301654 eV Core-core repulsion = 15916.134958 eV Total energy + Delta-G solvation = -2900.166695 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.05080 -38.85247 -35.57520 -34.20271 -32.35066 -31.59311 -30.98977 -28.19447 -27.23791 -25.68847 -23.53962 -22.64050 -21.54845 -20.20512 -18.85756 -17.04316 -16.72178 -16.26589 -15.88641 -15.72116 -15.04831 -14.98073 -14.38522 -13.97820 -13.51288 -13.33714 -12.99692 -12.72345 -12.70054 -12.48319 -12.25532 -12.02704 -11.68768 -11.41634 -11.24246 -11.06117 -10.80183 -10.54022 -10.49476 -9.67317 -9.64206 -9.28426 -9.03408 -9.01117 -8.83496 -8.62667 -8.30441 -5.95981 -3.97103 1.17629 1.31100 2.92655 3.11770 3.34904 3.42114 3.48058 3.78718 4.50715 4.62282 4.68629 4.89014 4.89703 5.01325 5.08948 5.22714 5.35400 5.37889 5.40224 5.55183 5.59496 5.63783 5.73774 5.78357 5.88106 5.96625 6.27304 6.33065 6.42521 6.49417 6.54600 6.75932 6.90081 6.96447 7.18938 7.46763 7.73528 7.86315 8.05071 8.43794 8.49376 9.10259 9.66800 11.15593 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.029406 B = 0.003600 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.974020 B = 7774.878242 C = 8168.726144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.622 5.622 3 C 0.154 3.846 4 C -0.105 4.105 5 C -0.109 4.109 6 C -0.127 4.127 7 C -0.120 4.120 8 C -0.123 4.123 9 C -0.094 4.094 10 C 0.515 3.485 11 O -0.535 6.535 12 C -0.136 4.136 13 C -0.095 4.095 14 C 0.020 3.980 15 C -0.516 4.516 16 H 0.056 0.944 17 C 0.055 3.945 18 N -0.898 5.898 19 Si 0.891 3.109 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.284 1.284 23 H 0.056 0.944 24 H 0.066 0.934 25 H 0.077 0.923 26 H 0.091 0.909 27 H 0.081 0.919 28 H 0.119 0.881 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.121 0.879 32 H 0.130 0.870 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.015 0.985 38 H 0.015 0.985 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.895 22.831 3.657 23.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.356 5.356 3 C 0.031 3.969 4 C -0.106 4.106 5 C -0.128 4.128 6 C -0.145 4.145 7 C -0.138 4.138 8 C -0.141 4.141 9 C -0.113 4.113 10 C 0.305 3.695 11 O -0.410 6.410 12 C -0.176 4.176 13 C -0.133 4.133 14 C -0.017 4.017 15 C -0.555 4.555 16 H 0.075 0.925 17 C -0.146 4.146 18 N -0.538 5.538 19 Si 0.719 3.281 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.211 1.211 23 H 0.075 0.925 24 H 0.085 0.915 25 H 0.096 0.904 26 H 0.109 0.891 27 H 0.100 0.900 28 H 0.137 0.863 29 H 0.137 0.863 30 H 0.137 0.863 31 H 0.139 0.861 32 H 0.148 0.852 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.033 0.967 38 H 0.034 0.966 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.370 22.671 3.630 23.000 hybrid contribution 0.358 -0.794 0.136 0.882 sum -1.012 21.876 3.765 22.221 Atomic orbital electron populations 1.21799 0.79493 1.03324 1.01811 1.48023 1.06909 1.05520 1.75178 1.20293 0.98634 0.85467 0.92502 1.20292 0.95057 0.98033 0.97231 1.21021 0.98632 0.98175 0.94977 1.21096 0.97666 1.00743 0.94996 1.21167 0.94570 0.98326 0.99766 1.21214 0.99601 0.98227 0.95050 1.21293 0.97212 0.98012 0.94735 1.21290 0.88308 0.85467 0.74467 1.90639 1.14246 1.87311 1.48847 1.21867 1.00345 0.91926 1.03472 1.21449 0.96758 0.93444 1.01619 1.19133 0.95427 0.90045 0.97079 1.21316 0.93290 0.90949 1.49915 0.92535 1.25024 0.95121 0.98982 0.95426 1.69977 1.12493 1.19925 1.51368 0.86543 0.81620 0.82408 0.77505 1.19681 1.21048 1.21053 0.92494 0.91507 0.90445 0.89082 0.90037 0.86350 0.86253 0.86288 0.86070 0.85249 0.89487 0.89439 0.92723 0.92784 0.96657 0.96622 0.93152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.73 10.24 59.85 0.61 1.34 16 2 N -0.62 -7.88 2.86 -182.95 -0.52 -8.41 16 3 C 0.15 1.73 5.53 -5.20 -0.03 1.70 16 4 C -0.10 -1.22 5.46 -104.63 -0.57 -1.80 16 5 C -0.11 -1.08 9.70 -39.58 -0.38 -1.47 16 6 C -0.13 -1.21 10.05 -39.58 -0.40 -1.61 16 7 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 8 C -0.12 -1.39 10.05 -39.58 -0.40 -1.79 16 9 C -0.09 -1.21 9.70 -39.58 -0.38 -1.59 16 10 C 0.51 8.56 7.67 -10.98 -0.08 8.47 16 11 O -0.53 -10.61 15.09 5.56 0.08 -10.53 16 12 C -0.14 -2.34 4.25 -27.88 -0.12 -2.45 16 13 C -0.09 -2.09 4.44 -26.73 -0.12 -2.21 16 14 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 15 C -0.52 -15.11 9.11 -34.44 -0.31 -15.42 16 16 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 17 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -27.28 13.29 55.43 0.74 -26.54 16 19 Si 0.89 22.18 29.54 -169.99 -5.02 17.16 16 20 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 23 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.07 0.49 8.07 -51.93 -0.42 0.07 16 25 H 0.08 0.73 6.44 -51.93 -0.33 0.40 16 26 H 0.09 1.15 7.36 -51.93 -0.38 0.76 16 27 H 0.08 0.68 8.01 -51.93 -0.42 0.27 16 28 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 29 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 30 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 31 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 32 H 0.13 1.84 7.59 -52.49 -0.40 1.44 16 33 H 0.09 1.38 7.40 -51.93 -0.38 1.00 16 34 H 0.09 1.37 8.11 -51.93 -0.42 0.94 16 35 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 36 H 0.05 1.24 8.10 -51.93 -0.42 0.82 16 37 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 330.68 15.07 4.98 4.98 Total: -1.00 -33.59 330.68 -8.66 -42.25 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -6.10 Total: -2.41 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: -2.82 Total: -16.51 kcal Atomic # 7 Polarization: -35.16 SS G_CDS: 0.21 Total: -34.95 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.08 Total: -10.53 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.59 -8.66 -42.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593933513.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.872 kcal (2) G-P(sol) polarization free energy of solvation -33.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds