Wall clock time and date at job start Mon Mar 30 2020 06:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.50691 * 109.47318 * 90.00113 * 3 2 1 5 5 C 1.38237 * 120.00087 * 269.73144 * 4 3 2 6 6 C 1.38237 * 119.99887 * 179.76622 * 5 4 3 7 7 C 1.38240 * 119.99987 * 0.50242 * 6 5 4 8 8 C 1.38235 * 120.00002 * 359.74667 * 7 6 5 9 9 C 1.38237 * 120.00019 * 0.02562 * 8 7 6 10 10 C 1.34779 * 120.00212 * 180.02562 * 2 1 3 11 11 O 1.21279 * 120.00410 * 179.97438 * 10 2 1 12 12 C 1.50703 * 119.99541 * 359.97438 * 10 2 1 13 13 C 1.53000 * 109.46653 * 179.97438 * 12 10 2 14 14 C 1.52999 * 109.46975 * 179.97438 * 13 12 10 15 15 C 1.50701 * 109.47286 * 180.02562 * 14 13 12 16 16 H 1.07995 * 120.00146 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99991 * 180.02562 * 15 14 13 18 18 N 1.31517 * 119.99978 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99855 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47161 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47329 * 119.99973 * 19 17 15 22 22 H 1.48502 * 109.47019 * 239.99817 * 19 17 15 23 23 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 24 24 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 25 25 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 26 26 H 1.09002 * 109.47278 * 210.00284 * 3 2 1 27 27 H 1.09006 * 109.46998 * 329.99806 * 3 2 1 28 28 H 1.07995 * 119.99731 * 359.97438 * 5 4 3 29 29 H 1.07995 * 120.00222 * 180.22621 * 6 5 4 30 30 H 1.08005 * 119.99922 * 179.72333 * 7 6 5 31 31 H 1.07998 * 120.00124 * 179.97438 * 8 7 6 32 32 H 1.07999 * 120.00129 * 179.97438 * 9 8 7 33 33 H 1.08996 * 109.47057 * 299.99739 * 12 10 2 34 34 H 1.08996 * 109.47084 * 60.00703 * 12 10 2 35 35 H 1.08994 * 109.48028 * 300.00003 * 13 12 10 36 36 H 1.09007 * 109.47101 * 60.00827 * 13 12 10 37 37 H 1.08998 * 109.47634 * 300.00696 * 14 13 12 38 38 H 1.08999 * 109.47136 * 60.00615 * 14 13 12 39 39 H 0.97002 * 119.99338 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 1.4207 5 6 1.5298 2.5065 2.0705 6 6 1.7580 2.9016 3.3754 7 6 2.9100 2.5025 4.0271 8 6 3.8313 1.7040 3.3755 9 6 3.6010 1.3051 2.0722 10 6 2.1389 -1.1672 -0.0005 11 8 3.3517 -1.1672 -0.0010 12 6 1.3854 -2.4723 -0.0005 13 6 2.3796 -3.6352 -0.0018 14 6 1.6147 -4.9602 -0.0012 15 6 2.5939 -6.1057 -0.0018 16 1 3.6557 -5.9084 -0.0022 17 6 2.1343 -7.4056 -0.0019 18 7 0.8413 -7.6459 -0.0010 19 14 3.3482 -8.8254 -0.0020 20 1 4.7341 -8.2919 -0.0025 21 1 3.1378 -9.6567 1.2104 22 1 3.1378 -9.6565 -1.2145 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3633 0.8900 0.5139 25 1 -0.3633 -0.8900 0.5139 26 1 3.1499 1.1384 -0.5139 27 1 1.6084 2.0284 -0.5139 28 1 0.6321 2.8221 1.5598 29 1 1.0384 3.5257 3.8844 30 1 3.0904 2.8149 5.0451 31 1 4.7316 1.3926 3.8844 32 1 4.3209 0.6816 1.5630 33 1 0.7591 -2.5302 0.8897 34 1 0.7585 -2.5298 -0.8903 35 1 3.0057 -3.5772 -0.8922 36 1 3.0069 -3.5779 0.8878 37 1 0.9889 -5.0181 0.8894 38 1 0.9871 -5.0178 -0.8905 39 1 0.5180 -8.5605 -0.0007 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593933513.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:02 Heat of formation + Delta-G solvation = -47.328152 kcal Electronic energy + Delta-G solvation = -18817.123411 eV Core-core repulsion = 15916.134958 eV Total energy + Delta-G solvation = -2900.988452 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.14798 -39.81360 -36.70405 -36.11431 -34.12100 -32.76233 -31.78539 -29.87417 -28.16421 -26.97789 -25.28101 -23.43921 -22.65780 -21.85511 -20.09197 -18.51276 -17.97150 -17.70025 -17.09840 -16.79020 -16.47314 -16.07663 -15.84694 -15.25992 -14.72152 -14.31033 -14.19944 -14.07998 -13.81108 -13.69799 -13.46227 -13.26674 -13.09416 -12.87060 -12.64217 -12.50217 -12.32534 -12.11179 -11.85610 -11.57239 -11.46116 -11.24052 -10.77623 -10.55400 -9.82568 -9.77644 -9.60580 -8.21085 -6.31039 0.35697 0.49559 1.38818 1.38963 1.53019 1.65028 2.11023 2.41232 2.94719 3.11751 3.66229 3.86270 3.96484 4.15542 4.17586 4.20812 4.28008 4.33401 4.35616 4.57827 4.65684 4.72896 4.78040 4.80822 4.95576 5.00298 5.08718 5.09977 5.15870 5.17772 5.51787 5.55271 5.56842 5.61500 5.69472 5.73943 5.85408 6.11443 6.25864 6.37574 6.84122 7.20717 7.37635 8.90678 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.029406 B = 0.003600 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.974020 B = 7774.878242 C = 8168.726144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.611 5.611 3 C 0.153 3.847 4 C -0.117 4.117 5 C -0.106 4.106 6 C -0.127 4.127 7 C -0.124 4.124 8 C -0.139 4.139 9 C -0.123 4.123 10 C 0.511 3.489 11 O -0.579 6.579 12 C -0.127 4.127 13 C -0.081 4.081 14 C 0.027 3.973 15 C -0.548 4.548 16 H 0.050 0.950 17 C 0.004 3.996 18 N -0.928 5.928 19 Si 0.962 3.038 20 H -0.269 1.269 21 H -0.274 1.274 22 H -0.274 1.274 23 H 0.075 0.925 24 H 0.095 0.905 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.120 0.880 28 H 0.150 0.850 29 H 0.150 0.850 30 H 0.142 0.858 31 H 0.126 0.874 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.040 0.960 36 H 0.036 0.964 37 H 0.000 1.000 38 H 0.002 0.998 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.418 24.284 4.104 24.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.344 5.344 3 C 0.031 3.969 4 C -0.118 4.118 5 C -0.125 4.125 6 C -0.144 4.144 7 C -0.142 4.142 8 C -0.157 4.157 9 C -0.142 4.142 10 C 0.301 3.699 11 O -0.459 6.459 12 C -0.167 4.167 13 C -0.119 4.119 14 C -0.010 4.010 15 C -0.586 4.586 16 H 0.068 0.932 17 C -0.194 4.194 18 N -0.569 5.569 19 Si 0.787 3.213 20 H -0.193 1.193 21 H -0.200 1.200 22 H -0.199 1.199 23 H 0.094 0.906 24 H 0.114 0.886 25 H 0.094 0.906 26 H 0.086 0.914 27 H 0.138 0.862 28 H 0.168 0.832 29 H 0.168 0.832 30 H 0.160 0.840 31 H 0.144 0.856 32 H 0.118 0.882 33 H 0.120 0.880 34 H 0.125 0.875 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.018 0.982 38 H 0.020 0.980 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.932 24.160 4.076 24.676 hybrid contribution 0.780 -1.180 0.026 1.414 sum -2.152 22.980 4.102 23.442 Atomic orbital electron populations 1.22114 0.76909 1.04717 1.03497 1.48017 1.08481 1.04746 1.73119 1.20431 0.98291 0.85403 0.92773 1.20361 0.95186 0.98897 0.97370 1.21348 0.98937 0.96958 0.95215 1.21523 0.97738 1.00234 0.94953 1.21497 0.94372 0.97497 1.00818 1.21383 1.00582 0.98995 0.94738 1.21261 0.97951 0.99187 0.95780 1.21112 0.87699 0.86472 0.74653 1.90630 1.15996 1.87987 1.51263 1.21683 0.99220 0.90594 1.05159 1.21156 0.97037 0.93672 1.00057 1.19008 0.94870 0.91612 0.95494 1.21710 0.93568 0.92560 1.50728 0.93200 1.25906 0.97122 1.01772 0.94644 1.70074 1.14239 1.20965 1.51590 0.85444 0.79080 0.78732 0.78078 1.19322 1.19993 1.19945 0.90618 0.88632 0.90642 0.91378 0.86230 0.83249 0.83232 0.84009 0.85638 0.88158 0.87978 0.87520 0.94125 0.94499 0.98180 0.97962 0.92627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.05 10.24 127.77 1.31 2.36 16 2 N -0.61 -14.60 2.86 -851.12 -2.43 -17.03 16 3 C 0.15 3.25 5.53 85.63 0.47 3.73 16 4 C -0.12 -2.61 5.46 -19.87 -0.11 -2.72 16 5 C -0.11 -1.76 9.70 22.27 0.22 -1.54 16 6 C -0.13 -1.99 10.05 22.27 0.22 -1.77 16 7 C -0.12 -2.24 10.05 22.27 0.22 -2.02 16 8 C -0.14 -3.19 10.05 22.27 0.22 -2.96 16 9 C -0.12 -3.30 9.70 22.27 0.22 -3.09 16 10 C 0.51 17.11 7.67 87.66 0.67 17.78 16 11 O -0.58 -24.12 15.09 -3.02 -0.05 -24.17 16 12 C -0.13 -4.34 4.25 29.85 0.13 -4.22 16 13 C -0.08 -3.70 4.44 30.59 0.14 -3.57 16 14 C 0.03 1.48 4.97 29.85 0.15 1.62 16 15 C -0.55 -32.81 9.11 25.60 0.23 -32.58 16 16 H 0.05 2.97 7.74 -2.91 -0.02 2.95 16 17 C 0.00 0.21 5.46 84.65 0.46 0.67 16 18 N -0.93 -56.77 13.29 21.45 0.28 -56.49 16 19 Si 0.96 45.71 29.54 68.60 2.03 47.74 16 20 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 21 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 22 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 23 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.10 0.94 8.07 -2.39 -0.02 0.92 16 25 H 0.07 1.21 6.44 -2.38 -0.02 1.20 16 26 H 0.07 1.77 7.36 -2.39 -0.02 1.75 16 27 H 0.12 1.61 8.01 -2.38 -0.02 1.59 16 28 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 29 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 30 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 31 H 0.13 2.58 8.06 -2.91 -0.02 2.55 16 32 H 0.10 3.19 7.59 -2.91 -0.02 3.17 16 33 H 0.10 3.17 7.40 -2.39 -0.02 3.15 16 34 H 0.11 3.22 8.11 -2.39 -0.02 3.20 16 35 H 0.04 1.93 8.10 -2.39 -0.02 1.91 16 36 H 0.04 1.77 8.10 -2.38 -0.02 1.75 16 37 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 38 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 39 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -74.96 330.68 5.40 -69.56 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: 1.01 Total: 8.68 kcal Atomic # 6 Polarization: -32.85 SS G_CDS: 4.56 Total: -28.30 kcal Atomic # 7 Polarization: -71.37 SS G_CDS: -2.15 Total: -73.52 kcal Atomic # 8 Polarization: -24.12 SS G_CDS: -0.05 Total: -24.17 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -74.96 5.40 -69.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593933513.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.230 kcal (2) G-P(sol) polarization free energy of solvation -74.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds