Wall clock time and date at job start Mon Mar 30 2020 06:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46796 * 2 1 4 4 N 1.46497 * 109.47335 * 239.99136 * 2 1 3 5 5 C 1.34777 * 119.99525 * 84.99977 * 4 2 1 6 6 O 1.21283 * 120.00463 * 0.02562 * 5 4 2 7 7 C 1.50700 * 119.99675 * 179.72583 * 5 4 2 8 8 C 1.53004 * 109.47208 * 180.27843 * 7 5 4 9 9 C 1.52997 * 109.47000 * 179.97438 * 8 7 5 10 10 C 1.50703 * 109.46940 * 179.97438 * 9 8 7 11 11 H 1.08001 * 120.00043 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00213 * 180.02562 * 10 9 8 13 13 N 1.31516 * 120.00298 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 119.99907 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.47136 * 89.99860 * 14 12 10 16 16 H 1.48503 * 109.47098 * 209.99926 * 14 12 10 17 17 H 1.48504 * 109.46915 * 329.99781 * 14 12 10 18 18 C 1.50701 * 109.46578 * 119.99326 * 2 1 3 19 19 C 1.38233 * 120.00008 * 79.73204 * 18 2 1 20 20 C 1.38235 * 119.99952 * 179.80759 * 19 18 2 21 21 C 1.38231 * 119.99942 * 0.39519 * 20 19 18 22 22 C 1.38236 * 120.00175 * 359.85638 * 21 20 19 23 23 C 1.38235 * 119.99885 * 359.95495 * 22 21 20 24 24 H 1.08995 * 109.47273 * 300.00977 * 1 2 3 25 25 H 1.08998 * 109.46811 * 60.00625 * 1 2 3 26 26 H 1.08994 * 109.47201 * 180.02562 * 1 2 3 27 27 H 0.97000 * 120.00580 * 265.00723 * 4 2 1 28 28 H 1.09009 * 109.47352 * 300.27556 * 7 5 4 29 29 H 1.08998 * 109.47585 * 60.27844 * 7 5 4 30 30 H 1.09000 * 109.46887 * 300.00372 * 8 7 5 31 31 H 1.08998 * 109.46846 * 59.99549 * 8 7 5 32 32 H 1.08995 * 109.47672 * 299.99669 * 9 8 7 33 33 H 1.09001 * 109.47109 * 60.00906 * 9 8 7 34 34 H 0.96997 * 120.00396 * 180.02562 * 13 12 10 35 35 H 1.07998 * 120.00035 * 359.97438 * 19 18 2 36 36 H 1.08005 * 120.00087 * 180.22773 * 20 19 18 37 37 H 1.08002 * 119.99640 * 179.83642 * 21 20 19 38 38 H 1.07992 * 119.99869 * 179.97438 * 22 21 20 39 39 H 1.07998 * 120.00172 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0185 -0.6908 -1.1960 5 6 2.1472 -0.0185 -2.3570 6 8 1.8591 1.1584 -2.4116 7 6 2.6554 -0.7275 -3.5859 8 6 2.7122 0.2568 -4.7558 9 6 3.2288 -0.4629 -6.0032 10 6 3.2841 0.5065 -7.1557 11 1 2.9815 1.5334 -7.0127 12 6 3.7211 0.0826 -8.3928 13 7 3.7698 0.9287 -9.3985 14 14 4.2438 -1.6936 -8.6405 15 1 3.0690 -2.5022 -9.0541 16 1 5.2868 -1.7601 -9.6955 17 1 4.7912 -2.2304 -7.3686 18 6 2.0323 -0.7103 1.2306 19 6 2.0614 -2.0918 1.2677 20 6 2.5258 -2.7433 2.3950 21 6 2.9534 -2.0134 3.4882 22 6 2.9194 -0.6319 3.4531 23 6 2.4587 0.0197 2.3243 24 1 -0.3633 0.5140 0.8898 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 2.2491 -1.6319 -1.1524 28 1 3.6539 -1.1197 -3.3923 29 1 1.9842 -1.5494 -3.8349 30 1 1.7138 0.6491 -4.9494 31 1 3.3834 1.0788 -4.5068 32 1 4.2272 -0.8547 -5.8094 33 1 2.5578 -1.2849 -6.2524 34 1 4.0769 0.6304 -10.2689 35 1 1.7239 -2.6622 0.4150 36 1 2.5520 -3.8227 2.4226 37 1 3.3137 -2.5224 4.3700 38 1 3.2531 -0.0617 4.3074 39 1 2.4325 1.0990 2.2967 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593933553.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:31 Heat of formation + Delta-G solvation = -34.483834 kcal Electronic energy + Delta-G solvation = -18495.160964 eV Core-core repulsion = 15594.729483 eV Total energy + Delta-G solvation = -2900.431481 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.23745 -39.04404 -35.69577 -34.23977 -32.25870 -31.69674 -31.17204 -29.49775 -28.16245 -24.52602 -23.47781 -22.93375 -21.10964 -20.22238 -19.81735 -17.68211 -16.68817 -16.50354 -16.06317 -15.40743 -15.35526 -14.74991 -14.23392 -14.04176 -13.75279 -13.68392 -13.40081 -13.18219 -12.67812 -12.51100 -12.39093 -11.95449 -11.86734 -11.55865 -11.37305 -11.06507 -10.95392 -10.76539 -9.98679 -9.82122 -9.68321 -9.44728 -9.26204 -9.18867 -9.10480 -8.97281 -8.49251 -5.98924 -3.96598 0.98647 1.06321 2.87945 3.20100 3.32866 3.39941 3.43005 3.50616 4.30444 4.48742 4.54153 4.66327 4.78792 5.00581 5.07198 5.11734 5.21675 5.25345 5.34410 5.48620 5.58358 5.62239 5.64305 5.65696 5.77720 6.01224 6.10227 6.13856 6.18074 6.21998 6.51282 6.58909 6.64839 6.71941 6.94876 7.40020 7.48210 7.55695 7.84731 8.41195 8.61322 9.07970 9.63173 11.14830 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.036004 B = 0.003238 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.507496 B = 8646.043593 C = 9065.903605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.181 3.819 3 H 0.095 0.905 4 N -0.735 5.735 5 C 0.514 3.486 6 O -0.534 6.534 7 C -0.142 4.142 8 C -0.087 4.087 9 C -0.015 4.015 10 C -0.518 4.518 11 H 0.073 0.927 12 C 0.064 3.936 13 N -0.905 5.905 14 Si 0.881 3.119 15 H -0.278 1.278 16 H -0.289 1.289 17 H -0.266 1.266 18 C -0.087 4.087 19 C -0.115 4.115 20 C -0.117 4.117 21 C -0.123 4.123 22 C -0.117 4.117 23 C -0.109 4.109 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.057 0.943 27 H 0.398 0.602 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.015 0.985 33 H 0.011 0.989 34 H 0.262 0.738 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.594 -8.792 27.141 28.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.076 3.924 3 H 0.113 0.887 4 N -0.389 5.389 5 C 0.302 3.698 6 O -0.409 6.409 7 C -0.182 4.182 8 C -0.125 4.125 9 C -0.052 4.052 10 C -0.556 4.556 11 H 0.091 0.909 12 C -0.137 4.137 13 N -0.544 5.544 14 Si 0.709 3.291 15 H -0.204 1.204 16 H -0.215 1.215 17 H -0.190 1.190 18 C -0.088 4.088 19 C -0.133 4.133 20 C -0.135 4.135 21 C -0.141 4.141 22 C -0.135 4.135 23 C -0.127 4.127 24 H 0.083 0.917 25 H 0.087 0.913 26 H 0.076 0.924 27 H 0.233 0.767 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.033 0.967 33 H 0.029 0.971 34 H 0.072 0.928 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.139 0.861 38 H 0.141 0.859 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.757 -7.899 26.889 28.276 hybrid contribution 0.413 -1.450 -0.175 1.518 sum -3.343 -9.349 26.714 28.499 Atomic orbital electron populations 1.22161 0.94266 1.02332 1.02811 1.19749 0.94182 0.96857 0.81619 0.88661 1.46293 1.69032 1.14044 1.09545 1.21178 0.76666 0.87511 0.84437 1.90690 1.49214 1.16165 1.84871 1.21879 1.02159 1.00746 0.93392 1.21262 1.02116 0.96774 0.92356 1.19608 0.95660 0.96325 0.93606 1.21173 1.43576 0.97868 0.93016 0.90933 1.25055 0.95228 0.97417 0.95976 1.69924 1.48036 1.34888 1.01575 0.86757 0.78615 0.85744 0.78005 1.20358 1.21463 1.19043 1.20008 0.99219 0.93987 0.95571 1.20956 1.00078 0.93801 0.98450 1.21148 0.98871 0.99985 0.93466 1.21186 1.00051 0.94261 0.98585 1.21158 0.99580 0.94672 0.98091 1.21051 0.98540 1.00095 0.93042 0.91692 0.91338 0.92380 0.76738 0.89379 0.89384 0.92089 0.92081 0.96671 0.97109 0.92807 0.86032 0.85913 0.86081 0.85899 0.85733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 9.46 37.16 0.35 -1.23 16 2 C 0.18 1.95 2.78 -69.08 -0.19 1.76 16 3 H 0.10 1.19 7.44 -51.93 -0.39 0.80 16 4 N -0.74 -8.48 5.03 -54.93 -0.28 -8.75 16 5 C 0.51 7.98 7.79 -10.98 -0.09 7.89 16 6 O -0.53 -10.42 15.64 5.55 0.09 -10.33 16 7 C -0.14 -2.21 5.70 -27.88 -0.16 -2.37 16 8 C -0.09 -1.82 4.44 -26.73 -0.12 -1.94 16 9 C -0.01 -0.35 4.04 -27.88 -0.11 -0.47 16 10 C -0.52 -15.27 9.66 -34.44 -0.33 -15.60 16 11 H 0.07 2.32 7.99 -52.49 -0.42 1.90 16 12 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 13 N -0.90 -28.57 13.96 55.43 0.77 -27.80 16 14 Si 0.88 21.90 27.47 -169.99 -4.67 17.23 16 15 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 16 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 17 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 18 C -0.09 -0.81 4.95 -104.62 -0.52 -1.33 16 19 C -0.11 -0.94 9.05 -39.58 -0.36 -1.30 16 20 C -0.12 -0.87 10.05 -39.58 -0.40 -1.27 16 21 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 22 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 23 C -0.11 -0.95 9.67 -39.58 -0.38 -1.33 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.40 3.56 6.89 -40.82 -0.28 3.28 16 28 H 0.09 1.22 8.14 -51.92 -0.42 0.80 16 29 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.06 1.35 8.10 -51.93 -0.42 0.92 16 31 H 0.06 1.35 8.10 -51.93 -0.42 0.93 16 32 H 0.02 0.36 7.20 -51.93 -0.37 -0.02 16 33 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 34 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 35 H 0.12 0.83 6.93 -52.49 -0.36 0.46 16 36 H 0.12 0.67 8.06 -52.48 -0.42 0.25 16 37 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 38 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 39 H 0.12 0.94 8.04 -52.49 -0.42 0.52 16 LS Contribution 327.45 15.07 4.93 4.93 Total: -1.00 -34.25 327.45 -8.38 -42.63 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -6.03 Total: 0.06 kcal Atomic # 6 Polarization: -14.77 SS G_CDS: -3.20 Total: -17.96 kcal Atomic # 7 Polarization: -37.05 SS G_CDS: 0.50 Total: -36.55 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.09 Total: -10.33 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.67 Total: 17.23 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -34.25 -8.38 -42.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593933553.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.147 kcal (2) G-P(sol) polarization free energy of solvation -34.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds