Wall clock time and date at job start Mon Mar 30 2020 06:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46796 * 2 1 4 4 N 1.46497 * 109.47335 * 239.99136 * 2 1 3 5 5 C 1.34777 * 119.99525 * 84.99977 * 4 2 1 6 6 O 1.21283 * 120.00463 * 0.02562 * 5 4 2 7 7 C 1.50700 * 119.99675 * 179.72583 * 5 4 2 8 8 C 1.53004 * 109.47208 * 180.27843 * 7 5 4 9 9 C 1.52997 * 109.47000 * 179.97438 * 8 7 5 10 10 C 1.50703 * 109.46940 * 179.97438 * 9 8 7 11 11 H 1.08001 * 120.00043 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00213 * 180.02562 * 10 9 8 13 13 N 1.31516 * 120.00298 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 119.99907 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.47136 * 89.99860 * 14 12 10 16 16 H 1.48503 * 109.47098 * 209.99926 * 14 12 10 17 17 H 1.48504 * 109.46915 * 329.99781 * 14 12 10 18 18 C 1.50701 * 109.46578 * 119.99326 * 2 1 3 19 19 C 1.38233 * 120.00008 * 79.73204 * 18 2 1 20 20 C 1.38235 * 119.99952 * 179.80759 * 19 18 2 21 21 C 1.38231 * 119.99942 * 0.39519 * 20 19 18 22 22 C 1.38236 * 120.00175 * 359.85638 * 21 20 19 23 23 C 1.38235 * 119.99885 * 359.95495 * 22 21 20 24 24 H 1.08995 * 109.47273 * 300.00977 * 1 2 3 25 25 H 1.08998 * 109.46811 * 60.00625 * 1 2 3 26 26 H 1.08994 * 109.47201 * 180.02562 * 1 2 3 27 27 H 0.97000 * 120.00580 * 265.00723 * 4 2 1 28 28 H 1.09009 * 109.47352 * 300.27556 * 7 5 4 29 29 H 1.08998 * 109.47585 * 60.27844 * 7 5 4 30 30 H 1.09000 * 109.46887 * 300.00372 * 8 7 5 31 31 H 1.08998 * 109.46846 * 59.99549 * 8 7 5 32 32 H 1.08995 * 109.47672 * 299.99669 * 9 8 7 33 33 H 1.09001 * 109.47109 * 60.00906 * 9 8 7 34 34 H 0.96997 * 120.00396 * 180.02562 * 13 12 10 35 35 H 1.07998 * 120.00035 * 359.97438 * 19 18 2 36 36 H 1.08005 * 120.00087 * 180.22773 * 20 19 18 37 37 H 1.08002 * 119.99640 * 179.83642 * 21 20 19 38 38 H 1.07992 * 119.99869 * 179.97438 * 22 21 20 39 39 H 1.07998 * 120.00172 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0185 -0.6908 -1.1960 5 6 2.1472 -0.0185 -2.3570 6 8 1.8591 1.1584 -2.4116 7 6 2.6554 -0.7275 -3.5859 8 6 2.7122 0.2568 -4.7558 9 6 3.2288 -0.4629 -6.0032 10 6 3.2841 0.5065 -7.1557 11 1 2.9815 1.5334 -7.0127 12 6 3.7211 0.0826 -8.3928 13 7 3.7698 0.9287 -9.3985 14 14 4.2438 -1.6936 -8.6405 15 1 3.0690 -2.5022 -9.0541 16 1 5.2868 -1.7601 -9.6955 17 1 4.7912 -2.2304 -7.3686 18 6 2.0323 -0.7103 1.2306 19 6 2.0614 -2.0918 1.2677 20 6 2.5258 -2.7433 2.3950 21 6 2.9534 -2.0134 3.4882 22 6 2.9194 -0.6319 3.4531 23 6 2.4587 0.0197 2.3243 24 1 -0.3633 0.5140 0.8898 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 2.2491 -1.6319 -1.1524 28 1 3.6539 -1.1197 -3.3923 29 1 1.9842 -1.5494 -3.8349 30 1 1.7138 0.6491 -4.9494 31 1 3.3834 1.0788 -4.5068 32 1 4.2272 -0.8547 -5.8094 33 1 2.5578 -1.2849 -6.2524 34 1 4.0769 0.6304 -10.2689 35 1 1.7239 -2.6622 0.4150 36 1 2.5520 -3.8227 2.4226 37 1 3.3137 -2.5224 4.3700 38 1 3.2531 -0.0617 4.3074 39 1 2.4325 1.0990 2.2967 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593933553.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:30 Heat of formation + Delta-G solvation = -56.262527 kcal Electronic energy + Delta-G solvation = -18496.105359 eV Core-core repulsion = 15594.729483 eV Total energy + Delta-G solvation = -2901.375876 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.18165 -39.94147 -36.71897 -36.02064 -34.15619 -32.79704 -31.77110 -30.44364 -29.70140 -25.95178 -24.58727 -23.63460 -22.29293 -21.48509 -21.13582 -19.00978 -18.35273 -17.58025 -16.93140 -16.68570 -16.27562 -16.00450 -15.49331 -15.21078 -14.90477 -14.68418 -14.52653 -14.24626 -14.07498 -13.83459 -13.40930 -13.15677 -13.11171 -12.69128 -12.58977 -12.45769 -11.97443 -11.80421 -11.75865 -11.70645 -11.48775 -11.32199 -10.81581 -10.74396 -10.19121 -9.82662 -9.66877 -8.27158 -6.32856 0.38052 0.49279 1.38997 1.42722 1.54844 1.66944 2.20378 2.39807 2.88568 3.07940 3.56861 3.88825 3.95300 4.13004 4.16409 4.24471 4.29062 4.30924 4.31860 4.60801 4.62931 4.71827 4.78305 4.92395 4.93099 4.98382 5.04348 5.05104 5.14280 5.20054 5.39679 5.55795 5.57442 5.61210 5.62976 5.68856 5.69927 6.09249 6.31468 6.55632 6.76011 7.28318 7.31694 8.90619 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.036004 B = 0.003238 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.507496 B = 8646.043593 C = 9065.903605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.182 3.818 3 H 0.072 0.928 4 N -0.714 5.714 5 C 0.514 3.486 6 O -0.585 6.585 7 C -0.131 4.131 8 C -0.081 4.081 9 C -0.009 4.009 10 C -0.540 4.540 11 H 0.019 0.981 12 C -0.004 4.004 13 N -0.958 5.958 14 Si 0.963 3.037 15 H -0.264 1.264 16 H -0.286 1.286 17 H -0.236 1.236 18 C -0.100 4.100 19 C -0.120 4.120 20 C -0.121 4.121 21 C -0.126 4.126 22 C -0.124 4.124 23 C -0.124 4.124 24 H 0.076 0.924 25 H 0.043 0.957 26 H 0.072 0.928 27 H 0.414 0.586 28 H 0.116 0.884 29 H 0.119 0.881 30 H 0.036 0.964 31 H 0.035 0.965 32 H 0.030 0.970 33 H 0.030 0.970 34 H 0.266 0.734 35 H 0.136 0.864 36 H 0.145 0.855 37 H 0.143 0.857 38 H 0.140 0.860 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.003 -12.835 29.226 32.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.077 3.923 3 H 0.090 0.910 4 N -0.368 5.368 5 C 0.302 3.698 6 O -0.465 6.465 7 C -0.171 4.171 8 C -0.119 4.119 9 C -0.046 4.046 10 C -0.578 4.578 11 H 0.037 0.963 12 C -0.200 4.200 13 N -0.599 5.599 14 Si 0.785 3.215 15 H -0.188 1.188 16 H -0.212 1.212 17 H -0.158 1.158 18 C -0.100 4.100 19 C -0.139 4.139 20 C -0.139 4.139 21 C -0.144 4.144 22 C -0.142 4.142 23 C -0.143 4.143 24 H 0.095 0.905 25 H 0.062 0.938 26 H 0.091 0.909 27 H 0.252 0.748 28 H 0.134 0.866 29 H 0.137 0.863 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.048 0.952 34 H 0.075 0.925 35 H 0.154 0.846 36 H 0.163 0.837 37 H 0.161 0.839 38 H 0.158 0.842 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.171 -11.978 29.029 31.563 hybrid contribution 0.207 -0.080 -0.764 0.796 sum -2.964 -12.058 28.265 30.872 Atomic orbital electron populations 1.22101 0.93708 1.03033 1.02152 1.19719 0.94604 0.95930 0.82008 0.91023 1.46083 1.67445 1.14661 1.08596 1.21173 0.76271 0.86846 0.85468 1.90684 1.51710 1.18376 1.85699 1.21735 1.04658 0.99686 0.91016 1.21041 0.99858 0.97272 0.93733 1.19547 0.96954 0.95579 0.92560 1.21572 1.43697 0.96904 0.95665 0.96286 1.26212 0.94976 1.03581 0.95222 1.70108 1.49352 1.37987 1.02415 0.85483 0.78609 0.78267 0.79179 1.18845 1.21244 1.15844 1.19874 1.00650 0.94618 0.94908 1.21154 1.00018 0.93259 0.99429 1.21465 0.98135 1.01228 0.93057 1.21539 0.99246 0.94193 0.99381 1.21419 0.99237 0.95301 0.98214 1.21212 0.99074 1.00439 0.93571 0.90530 0.93824 0.90903 0.74775 0.86616 0.86298 0.94468 0.94624 0.95143 0.95178 0.92503 0.84586 0.83730 0.83916 0.84218 0.85690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 9.46 71.98 0.68 -2.29 16 2 C 0.18 3.82 2.78 44.25 0.12 3.95 16 3 H 0.07 1.86 7.44 -2.39 -0.02 1.84 16 4 N -0.71 -15.28 5.03 -446.08 -2.24 -17.53 16 5 C 0.51 15.57 7.79 87.66 0.68 16.25 16 6 O -0.59 -23.64 15.64 -3.04 -0.05 -23.69 16 7 C -0.13 -3.79 5.70 29.85 0.17 -3.62 16 8 C -0.08 -3.41 4.44 30.59 0.14 -3.27 16 9 C -0.01 -0.43 4.04 29.85 0.12 -0.31 16 10 C -0.54 -32.79 9.66 25.60 0.25 -32.54 16 11 H 0.02 1.29 7.99 -2.91 -0.02 1.27 16 12 C 0.00 -0.25 5.47 84.65 0.46 0.21 16 13 N -0.96 -62.31 13.96 21.45 0.30 -62.01 16 14 Si 0.96 44.12 27.47 68.60 1.88 46.00 16 15 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 16 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 17 H -0.24 -9.60 6.54 99.48 0.65 -8.95 16 18 C -0.10 -1.71 4.95 -19.87 -0.10 -1.81 16 19 C -0.12 -1.65 9.05 22.27 0.20 -1.45 16 20 C -0.12 -1.41 10.05 22.27 0.22 -1.19 16 21 C -0.13 -1.46 10.05 22.27 0.22 -1.23 16 22 C -0.12 -1.64 10.05 22.27 0.22 -1.42 16 23 C -0.12 -2.03 9.67 22.27 0.22 -1.82 16 24 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.41 6.11 6.89 -92.71 -0.64 5.47 16 28 H 0.12 2.75 8.14 -2.38 -0.02 2.73 16 29 H 0.12 2.74 8.14 -2.39 -0.02 2.73 16 30 H 0.04 1.70 8.10 -2.39 -0.02 1.68 16 31 H 0.03 1.64 8.10 -2.39 -0.02 1.62 16 32 H 0.03 1.35 7.20 -2.39 -0.02 1.33 16 33 H 0.03 1.31 7.57 -2.39 -0.02 1.29 16 34 H 0.27 16.01 8.31 -92.71 -0.77 15.24 16 35 H 0.14 1.37 6.93 -2.91 -0.02 1.34 16 36 H 0.14 1.01 8.06 -2.91 -0.02 0.99 16 37 H 0.14 0.98 8.06 -2.91 -0.02 0.96 16 38 H 0.14 1.28 8.06 -2.91 -0.02 1.25 16 39 H 0.13 1.90 8.04 -2.91 -0.02 1.88 16 Total: -1.00 -78.41 327.45 3.84 -74.57 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: 0.33 Total: 13.16 kcal Atomic # 6 Polarization: -34.13 SS G_CDS: 3.61 Total: -30.52 kcal Atomic # 7 Polarization: -77.59 SS G_CDS: -1.94 Total: -79.53 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -0.05 Total: -23.69 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 1.88 Total: 46.00 kcal Total: -78.41 3.84 -74.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593933553.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.307 kcal (2) G-P(sol) polarization free energy of solvation -78.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds